Rh7CG268400

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
26394806 .. 26406362
11557 bp
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UTR
Exon/CDS
Intron
Rh7CG268400.1

Sequence Viewer

Length: 204 bp
ATGGTTGTATTCCTAGATAGGGTTTATGAGAATCTTGAGCAGGGCAGCAATTTCGGGTTGCTCAATGCGGTTCTAAGTAATCCTGAAAAGACACCGATTCATACTTTCCTTTGCAACTATGATTTAAGTGACATGTCGGCTGGTACCAAAGTGGAAGCAACATTAGTTATAGAAGCATTTGAAAAAAGGTTAGGGCCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.45

Weight (kDa)

4.64

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 1 cut(s) 68
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 182
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BanI GGYRCC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BfaI CTAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 19
BsnI GGCC 1 cut(s) 196
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 133, 201
CviJI RGCY 2 cut(s) 140, 196
CviKI_1 RGCY 2 cut(s) 140, 196
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 74
FaeI CATG 2 cut(s) 136, 204
FaiI YATR 6 cut(s) 27, 102, 120, 134, 170, 202
FatI CATG 2 cut(s) 132, 200
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 2 cut(s) 136, 204
HinfI GANTC 2 cut(s) 31, 97
Hpy188III TCNNGA 2 cut(s) 35, 83
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 2 cut(s) 136, 204
KpnI GGTACC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 26, 96, 126
Lsp1109I GCAGC 1 cut(s) 57
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 128
MluCI AATT 1 cut(s) 49
MseI TTAA 1 cut(s) 125
NlaIII CATG 2 cut(s) 136, 204
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PfeI GAWTC 2 cut(s) 31, 97
PkrI GCNGC 1 cut(s) 47
PscI ACATGT 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 194
SetI ASST 1 cut(s) 191
SgeI CNNG 7 cut(s) 26, 47, 53, 67, 95, 145, 153
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 49
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 14
TasI AATT 1 cut(s) 49
TfiI GAWTC 2 cut(s) 31, 97
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 89
XceI RCATGY 1 cut(s) 136
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.