Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

65696837 .. 65697279

Gene Structure 443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG490600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAAGTTGAACAAGGATAGGAGATGGGATGAGACTGTATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTTTCCGGATTTTCTTCTAAAGCTTGATGCACTCTCTCTATTTCATTATGAACAGATTTACTTTTATAGGGGACCTGATAAATTGGCTTCTGTGCCAGGTATAGGAGTTAATCCAATAGCTTGCCCAAGCCTTTTGGATACGTACTACATTCATATGTTTGGCAAAATTTACACAAAGCGTGTGGTGTTAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID

Protein Analysis

89

Amino Acids

10.31

Weight (kDa)

9.1

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	10, 49
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	94, 191
AluI	AGCT	2 cut(s)	94, 191
Alw26I	GTCTC	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BccI	CCATC	2 cut(s)	18, 50
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	2 cut(s)	49, 202
BcoDI	GTCTC	1 cut(s)	26
BfuI	GTATCC	2 cut(s)	49, 202
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	34, 61
BseLI	CCNNNNNNNGG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	34, 61
BstMAI	GTCTC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSNI	TACGTA	1 cut(s)	213
BsuI	GTATCC	2 cut(s)	49, 202
BtsCI	GGATG	2 cut(s)	34, 61
Cac8I	GCNNGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviJI	RGCY	4 cut(s)	94, 158, 191, 201
CviKI_1	RGCY	4 cut(s)	94, 158, 191, 201
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	267
Eco105I	TACGTA	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	166
FaiI	YATR	5 cut(s)	120, 138, 173, 225, 227
FaqI	GGGAC	1 cut(s)	156
FauNDI	CATATG	1 cut(s)	225
FokI	GGATG	2 cut(s)	41, 68
HapII	CCGG	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	261
LpnPI	CCDG	4 cut(s)	90, 153, 159, 180
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	212
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	4 cut(s)	50, 70, 152, 237
MnlI	CCTC	2 cut(s)	52, 54
MroI	TCCGGA	1 cut(s)	76
MseI	TTAA	2 cut(s)	180, 260
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	180, 260
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	5 cut(s)	96, 148, 172, 193, 215
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	9 cut(s)	25, 89, 107, 158, 179, 180, 204, 210, 263
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	224
SnaBI	TACGTA	1 cut(s)	213
Sse9I	AATT	4 cut(s)	50, 70, 152, 237
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	215
TasI	AATT	4 cut(s)	50, 70, 152, 237
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	180, 260
Tru9I	TTAA	2 cut(s)	180, 260
TspDTI	ATGAA	4 cut(s)	17, 104, 135, 212
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.