RchiOBHm_Chr7g0230301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001197
Physical Location & Seq
Forward (+)
53747021 .. 53750022
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20635

Sequence Viewer

Length: 216 bp
ATGCCGAAAAAGCCCCTTTCACCTAACCCTTACATCCAAGCTGACCACGATTCAGCTTTCGCTACCAAGCCGCTACCAGTACCGTTCGATTTGCCCAAATCTCCGACCTCTGTCGCTCAGAACATTCCGGTGAAGGTTTGTTCCGTACTTCATTCAGCCTGGATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.88

Weight (kDa)

7.93

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AfaI GTAC 2 cut(s) 81, 147
AgsI TTSAA 2 cut(s) 190, 206
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 2 cut(s) 41, 56
AluI AGCT 2 cut(s) 41, 56
AsuHPI GGTGA 2 cut(s) 12, 142
BbsI GAAGAC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 160
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 33, 168
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 128
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 33, 168
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 33, 168
Csp6I GTAC 2 cut(s) 80, 146
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 13, 41, 56, 70, 158
CviKI_1 RGCY 5 cut(s) 13, 41, 56, 70, 158
CviQI GTAC 2 cut(s) 80, 146
DdeI CTNAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 1 cut(s) 179
FaiI YATR 2 cut(s) 177, 214
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 2 cut(s) 20, 175
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HapII CCGG 1 cut(s) 128
Hin1II CATG 1 cut(s) 179
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 12, 142
Hpy188I TCNGA 2 cut(s) 105, 120
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 179
LpnPI CCDG 4 cut(s) 90, 141, 145, 172
MboII GAAGA 1 cut(s) 194
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 179
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 72
PshAI GACNNNNGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
RsaI GTAC 2 cut(s) 81, 147
RsaNI GTAC 2 cut(s) 80, 146
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 160
SetI ASST 5 cut(s) 25, 43, 58, 110, 138
SgeI CNNG 9 cut(s) 50, 59, 79, 89, 140, 171, 172, 188, 199
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 201
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 140, 195
TspGWI ACGGA 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.