Rh3BG081200

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001197
Physical Location & Seq
Forward (+)
6351065 .. 6356834
5770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG081200.1

Sequence Viewer

Length: 1083 bp
ATGATCTACTTTGGACCAGCTCGACCAGATGCAACTACTTTGGAGTCGGAGCTCCGAACACCGACGAGAAACGTAACGAGGTCTCTTCTGGGCTCACCCAAAACCCATTTCAAGCTGTTTGAATTTGTGGCGGTTGTTATTGTAGTTGTGAATCAGTGTTTTGAGCTTCCCTTTGGTAAAAATGTTTACTTTTCACCTGTTGATACTGGTTCAGCTTCAGTGGTCACATTGTTGGGTAATGTTACTAGTTCAAATGATTCGGAGTCTGGGAAGTTTGATGTTGTTGGTGTAGTGGGGATAGTGGTTAATGCTACTGGTGGTTTAGAGTTAGAGGAGTTTGAGTTGGAGAAAGATGCAAATCAAGCCAGTGGAATCATTTGGAGTGAGCAGCAGAGCCATATCCAATTAAGCATTTTCTTCAGTATGCCAATGAAGAATGTGAGAGAGGACACCAGAGATAGCCAGATCAGCGGCTTCTCTGAGTTCTCTAAACCACAATGCTCTGGTTCGGCGTCTGCGGAAAAACAATCAGCACCAGAAGCAGAACAGAAGCATATCCCCCAGCTGCACTCAGAGAAAGAAGAGATATGGACAAAAGATATGCACTCATCGGCAGAAAACCAACTAGCAGTACCCAAAGCAGCACAGGAGCAGACCCCCCAGCTGCACTTGAAGAAAAAAGAGATGAGGAAAAGAGGTTCAGCATCAGCTGAAAAACAGTTGGCTGTACCCAGGAAAAAAGGGATGAAGAAGCCAGGTGCTCGACAAGGGATACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGGGAGATTAAAAAAAATTCAATCTAATAAAGGCCAGAATCTCCGACAACTGGCCAATGATGCATGGAATCAGCTATCTGAGGCTGAGAAACAGCCCTTCCTTGAGCAAAGTATCAAGGAAAAGGAAAGCTTTGCTAACAAAGTGGCTGTTGATGATGAACAAAACCATGTCATGGAAAGTGCTGATTTGGAGAACAAGCAGGCTTCGCCGGATGGTGACTACCATGTGATTTTGGATCCAAGTGATGCAGAAAAATCTATTGAGGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

360

Amino Acids

39.92

Weight (kDa)

5.93

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 982
AciI CCGC 3 cut(s) 131, 471, 518
AclWI GGATC 2 cut(s) 1040, 1053
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 2 cut(s) 122, 825
AcuI CTGAAG 2 cut(s) 201, 403
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 2 cut(s) 633, 729
AfiI CCNNNNNNNGG 2 cut(s) 859, 982
AgsI TTSAA 5 cut(s) 112, 122, 252, 673, 830
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 2 cut(s) 731, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AloI GAACNNNNNNTCC 2 cut(s) 682, 714
Alw21I GWGCWC 2 cut(s) 54, 763
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 2 cut(s) 1040, 1053
AoxI GGCC 2 cut(s) 841, 861
ApeKI GCWGC 4 cut(s) 388, 565, 641, 664
ApoI RAATTY 2 cut(s) 122, 825
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 87, 186, 1037
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 863
BamHI GGATCC 1 cut(s) 1045
BanII GRGCYC 2 cut(s) 54, 95
Bbv12I GWGCWC 2 cut(s) 54, 763
BbvI GCAGC 4 cut(s) 400, 552, 651, 653
BccI CCATC 1 cut(s) 1016
BciT130I CCWGG 2 cut(s) 733, 756
BciVI GTATCC 1 cut(s) 765
BcoDI GTCTC 1 cut(s) 87
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 2 cut(s) 246, 626
BfuI GTATCC 1 cut(s) 765
BisI GCNGC 5 cut(s) 389, 472, 566, 642, 665
BlsI GCNGC 5 cut(s) 390, 473, 567, 643, 666
Bme1390I CCNGG 2 cut(s) 733, 756
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 1047
BmrFI CCNGG 2 cut(s) 733, 756
BmsI GCATC 5 cut(s) 19, 343, 713, 859, 1045
BpuEI CTTGAG 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 859, 982
Bse1I ACTGG 4 cut(s) 211, 319, 366, 864
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 2 cut(s) 733, 756
BseDI CCNNGG 1 cut(s) 731
BseGI GGATG 2 cut(s) 750, 1027
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 859, 982
BseMII CTCAG 4 cut(s) 471, 585, 879, 885
BseNI ACTGG 4 cut(s) 211, 319, 366, 864
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 4 cut(s) 400, 552, 651, 653
BseYI CCCAGC 2 cut(s) 561, 660
BsgI GTGCAG 2 cut(s) 551, 650
BshFI GGCC 2 cut(s) 843, 863
BsiHKAI GWGCWC 2 cut(s) 54, 763
BsiSI CCGG 1 cut(s) 1019
BslI CCNNNNNNNGG 2 cut(s) 859, 982
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 2 cut(s) 843, 863
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 3 cut(s) 54, 95, 763
Bsp143I GATC 3 cut(s) 3, 465, 1045
BspACI CCGC 3 cut(s) 131, 471, 518
BspANI GGCC 2 cut(s) 843, 863
BspCNI CTCAG 4 cut(s) 472, 584, 880, 886
BspLI GGNNCC 1 cut(s) 1047
BspPI GGATC 2 cut(s) 1040, 1053
BspTNI GGTCTC 1 cut(s) 87
BsrI ACTGG 4 cut(s) 211, 319, 366, 864
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 3 cut(s) 3, 465, 1045
BssNI GRCGYC 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 733, 756
Bst4CI ACNGT 1 cut(s) 720
Bst6I CTCTTC 2 cut(s) 90, 576
BstACI GRCGYC 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 1011
BstDEI CTNAG 4 cut(s) 480, 571, 888, 894
BstEII GGTNACC 1 cut(s) 782
BstF5I GGATG 2 cut(s) 750, 1027
BstKTI GATC 3 cut(s) 6, 468, 1048
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 3, 465, 1045
BstMWI GCNNNNNNNGC 5 cut(s) 362, 468, 539, 869, 1015
BstNI CCWGG 2 cut(s) 733, 756
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 2 cut(s) 731, 754
BstV1I GCAGC 4 cut(s) 400, 552, 651, 653
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 2 cut(s) 843, 863
BtsCI GGATG 2 cut(s) 750, 1027
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 4 cut(s) 161, 225, 373, 784
Cac8I GCNNGC 1 cut(s) 1011
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 632, 728
CviAII CATG 4 cut(s) 873, 977, 982, 1034
CviQI GTAC 2 cut(s) 632, 728
DdeI CTNAG 4 cut(s) 480, 571, 888, 894
DpnI GATC 3 cut(s) 5, 467, 1047
DpnII GATC 3 cut(s) 3, 465, 1045
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 2 cut(s) 90, 576
EarI CTCTTC 2 cut(s) 90, 576
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 54, 95
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 201, 403
Eco91I GGTNACC 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 782
EcoRII CCWGG 2 cut(s) 731, 754
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 2 cut(s) 54, 95
FaeI CATG 4 cut(s) 876, 980, 985, 1037
FaiI YATR 9 cut(s) 399, 425, 555, 589, 602, 874, 978, 983, 1035
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FatI CATG 4 cut(s) 872, 976, 981, 1033
Fnu4HI GCNGC 5 cut(s) 389, 472, 566, 642, 665
FokI GGATG 2 cut(s) 757, 1034
FriOI GRGCYC 2 cut(s) 54, 95
Fsp4HI GCNGC 5 cut(s) 389, 472, 566, 642, 665
FspBI CTAG 2 cut(s) 246, 626
GluI GCNGC 5 cut(s) 389, 472, 566, 642, 665
GsaI CCCAGC 2 cut(s) 565, 664
HaeIII GGCC 2 cut(s) 843, 863
HapII CCGG 1 cut(s) 1019
HgaI GACGC 1 cut(s) 501
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 4 cut(s) 876, 980, 985, 1037
HindIII AAGCTT 1 cut(s) 937
HinfI GANTC 7 cut(s) 44, 151, 257, 263, 372, 847, 877
HpaII CCGG 1 cut(s) 1019
HphI GGTGA 3 cut(s) 87, 186, 1037
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 7 cut(s) 49, 56, 262, 481, 574, 854, 889
Hpy188III TCNNGA 1 cut(s) 799
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 916
HpyCH4III ACNGT 1 cut(s) 720
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 7 cut(s) 32, 356, 568, 604, 667, 872, 1058
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 468, 539, 869, 1015
HpyF3I CTNAG 4 cut(s) 480, 571, 888, 894
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 4 cut(s) 876, 980, 985, 1037
Kzo9I GATC 3 cut(s) 3, 465, 1045
LmnI GCTCC 3 cut(s) 49, 57, 649
Lsp1109I GCAGC 4 cut(s) 400, 552, 651, 653
LweI GCATC 5 cut(s) 19, 343, 713, 859, 1045
MaeI CTAG 2 cut(s) 246, 626
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 5 cut(s) 73, 223, 241, 782, 1025
MalI GATC 3 cut(s) 5, 467, 1047
MboI GATC 3 cut(s) 3, 465, 1045
MboII GAAGA 6 cut(s) 77, 409, 445, 593, 685, 760
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 3 cut(s) 54, 95, 763
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 4 cut(s) 122, 404, 825, 1078
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 2 cut(s) 53, 272
MmeI TCCRAC 3 cut(s) 27, 324, 877
MnlI CCTC 7 cut(s) 72, 325, 439, 681, 689, 883, 1066
Mox20I TGGCCA 1 cut(s) 863
Mph1103I ATGCAT 1 cut(s) 874
MscI TGGCCA 1 cut(s) 863
MseI TTAA 4 cut(s) 306, 407, 818, 1081
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 4 cut(s) 471, 565, 664, 710
MspI CCGG 1 cut(s) 1019
MspR9I CCNGG 2 cut(s) 733, 756
MvaI CCWGG 2 cut(s) 733, 756
MwoI GCNNNNNNNGC 5 cut(s) 362, 468, 539, 869, 1015
NdeII GATC 3 cut(s) 3, 465, 1045
NlaIII CATG 4 cut(s) 876, 980, 985, 1037
NlaIV GGNNCC 1 cut(s) 1047
NmuCI GTSAC 2 cut(s) 223, 1025
NsiI ATGCAT 1 cut(s) 874
PfeI GAWTC 5 cut(s) 151, 257, 372, 847, 877
PflMI CCANNNNNTGG 1 cut(s) 982
PkrI GCNGC 5 cut(s) 390, 473, 567, 643, 666
PleI GAGTC 2 cut(s) 52, 271
PpsI GAGTC 2 cut(s) 52, 271
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 731, 754
PspEI GGTNACC 1 cut(s) 782
PspFI CCCAGC 2 cut(s) 561, 660
PspGI CCWGG 2 cut(s) 731, 754
PspN4I GGNNCC 1 cut(s) 1047
PspPI GGNCC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 1045
PvuII CAGCTG 3 cut(s) 565, 664, 710
RsaI GTAC 2 cut(s) 633, 729
RsaNI GTAC 2 cut(s) 632, 728
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 306, 407, 818, 1081
SatI GCNGC 5 cut(s) 389, 472, 566, 642, 665
Sau3AI GATC 3 cut(s) 3, 465, 1045
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 53, 272
ScrFI CCNGG 2 cut(s) 733, 756
SduI GDGCHC 3 cut(s) 54, 95, 763
SfaNI GCATC 5 cut(s) 19, 343, 713, 859, 1045
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 4 cut(s) 122, 404, 825, 1078
SsiI CCGC 3 cut(s) 131, 471, 518
SspMI CTAG 2 cut(s) 246, 626
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 731, 754
TaaI ACNGT 1 cut(s) 720
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 22, 763
TasI AATT 4 cut(s) 122, 404, 825, 1078
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 5 cut(s) 151, 257, 372, 847, 877
Tru1I TTAA 4 cut(s) 306, 407, 818, 1081
Tru9I TTAA 4 cut(s) 306, 407, 818, 1081
TscAI CASTG 4 cut(s) 161, 225, 373, 784
TseFI GTSAC 2 cut(s) 223, 1025
TseI GCWGC 4 cut(s) 388, 565, 641, 664
Tsp45I GTSAC 2 cut(s) 223, 1025
TspDTI ATGAA 3 cut(s) 446, 761, 981
TspRI CASTG 4 cut(s) 161, 225, 373, 784
Van91I CCANNNNNTGG 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 2 cut(s) 122, 825
XspI CTAG 2 cut(s) 246, 626
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.