Rh2AG158300

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001197
Physical Location & Seq
Forward (+)
14902973 .. 14904640
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG158300.1

Sequence Viewer

Length: 261 bp
ATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGAGTCATAGGTTATGGACTGTTTGGTACAGTTTTATGATCGATCTCTGTCGAGTTGTTGGGTTGTGCGAGTTGTTTGAAGATCTCACTATTGATATTGAGGATAACCTACAAATGGAAATGAAGTGCACAAGCCATTCATCTCAAATGGTAACAAATGTTGATGATGGGCCTGGAGAGAAGAAGATGCTCAAGGAGAGCTATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

86

Amino Acids

10.07

Weight (kDa)

4.68

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 3 cut(s) 28, 44, 131
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
Alw21I GWGCWC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 178
AoxI GGCC 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 225
BglII AGATCT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 227
Bsa29I ATCGAT 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 182
BshFI GGCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 90, 94, 133
BspANI GGCC 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 93
BssMI GATC 3 cut(s) 90, 94, 133
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 73, 83
BstKTI GATC 3 cut(s) 93, 97, 136
BstMBI GATC 3 cut(s) 90, 94, 133
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 223
BsuTUI ATCGAT 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 14
CviJI RGCY 3 cut(s) 186, 223, 252
CviKI_1 RGCY 3 cut(s) 186, 223, 252
CviQI GTAC 1 cut(s) 79
DpnI GATC 3 cut(s) 92, 96, 135
DpnII GATC 3 cut(s) 90, 94, 133
EcoRII CCWGG 1 cut(s) 223
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 60, 67, 89
FatI CATG 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 1 cut(s) 17
HinfI GANTC 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4III ACNGT 2 cut(s) 73, 83
HpyCH4V TGCA 2 cut(s) 13, 180
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 3 cut(s) 90, 94, 133
LpnPI CCDG 2 cut(s) 210, 237
LweI GCATC 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 92, 96, 135
MboI GATC 3 cut(s) 90, 94, 133
MboII GAAGA 4 cut(s) 32, 143, 244, 247
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 1 cut(s) 39
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 1 cut(s) 145
MseI TTAA 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NdeII GATC 3 cut(s) 90, 94, 133
NlaIII CATG 1 cut(s) 17
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 259
Sau3AI GATC 3 cut(s) 90, 94, 133
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 182
SetI ASST 3 cut(s) 65, 162, 254
SfaNI GCATC 1 cut(s) 228
SgeI CNNG 8 cut(s) 26, 37, 116, 133, 195, 236, 237, 256
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 73, 83
TaqI TCGA 2 cut(s) 93, 103
TasI AATT 1 cut(s) 39
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 33, 180, 188
VneI GTGCAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.