Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

15486130 .. 15487301

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAAGGCTACTGAGAACCAGCCAGAGACTGAGAAAAATGGCTCTCAATGCCTTGGTACTATGAATTCCAATGTGATACTTTCTGAGCCTGATGATGGGAAAAGCTTGCTGGAGTTGGAGAACTCTGAGATTGAGAGTTTCTATCAGAGACTCAACAAGTTGCACAACTCGTCTGGGCTGAATCTTCTTTTTGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box HMG_box_2

Protein Analysis

67

Amino Acids

7.39

Weight (kDa)

4.44

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	20, 142
AlwNI	CAGNNNCTG	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	64
BccI	CCATC	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	20, 142
BpmI	CTGGAG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	21, 75, 117
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	20, 142
Bsp143I	GATC	1 cut(s)	193
BspCNI	CTCAG	4 cut(s)	4, 22, 76, 118
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	12, 30, 84, 126
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	20, 142
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	57
CviJI	RGCY	6 cut(s)	8, 22, 42, 88, 105, 178
CviKI_1	RGCY	6 cut(s)	8, 22, 42, 88, 105, 178
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	4 cut(s)	12, 30, 84, 126
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaiI	YATR	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	2 cut(s)	150, 181
Hpy188I	TCNGA	4 cut(s)	85, 127, 147, 200
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	4 cut(s)	12, 30, 84, 126
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	32, 36, 95, 102, 159
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	1 cut(s)	176
MluCI	AATT	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	144
SetI	ASST	1 cut(s)	107
SgeI	CNNG	9 cut(s)	31, 35, 65, 101, 118, 122, 169, 181, 186
Sse9I	AATT	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	52
TasI	AATT	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	17, 77
XapI	RAATTY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.