FvH4_6g07580

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001197
Physical Location & Seq
Forward (+)
4549426 .. 4552485
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07580.t5

Sequence Viewer

Length: 1263 bp
ATGCCAATGAAGAATGTGAGAGATGACGCCAGAGATAGCCAGATCAGCGGCTTCTCTGAGTTCTCTAAACCACAATGCTCTGGTAAACTGATCAATCCCAATGTGTTCAATTCTGGGTTTGAGGGGAAAAGCATGTTTGACAGCTCTGATAGTCAGAGCTTCTATGAAAGGCTAAGCAAGTTGAATGAGTCAAATGGGTACAATCTTGTACATACCAAATTGAATTTGCATCTGTTTTACAAGGAAGTTACTCTCAGGGGAGGCTTTAATCAGGTGAACAAAGATAAGAGATGGGATGAGGTTGCATCCTCTTTGAAATTGGATGGGAGGAAACTCAATTATCAGGATATTCTTCTAAAGCTTTATGCGCTCTTTCTGTTTCACTATGAACAGATTTACTTTTATAGGGGACCCGAGAAATCGGCTTCAATGCCAGATATCACTGTAGATAGGGAGGATAGTCCACGAATGGAAATGAAGTACACCAACCAAGCTTCTCGAATGGTCCCAAGTGTTGGAGAAGGGCCTGGAGGGAAGAAGATGCTCAAGGAGAACTGTTCTGATATTAAGGATAGCCCACAAATGGAAATGAAGTGCACCAACCATTCATCTCAAATTGTAACAACTGTTGAAAATGGGCCTGGAGGTTTGGTGTCTGCAGAAAAACAATCAGCACCTGAAACAGAACAAAAGCAGATCCTCCAGCTGCACTCAGAGAAAGAAGAAATAGGAACAAAAAGTTCTGCATTGGCAGAAAACCAACCAGAAGTACCTGAAGTAGCAGAGGAGCAGACCACCCAGCTGCACTCGAAGAAAAAACAGATGAGGAAAAGAGGTTCAGCATCAGCAGAAAAAGAATTGGCTGTACCCAAGAAAAAATGTATGAGAAAGCCAGGTGCTCGACAAGGGTTACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGATAGGTTAAAAGAAATTAAATGTAATAAAGGCCAGAATCTCCGACATATGGCCAATGATGCGTGGAATCGGCTATCTGAGGCTGAGAAACAGCCCTGGATTGAGCAAAGTATCAAGGAAAAGGAGCAAATAATCAAGGAAAGGGAGCAAAGAATCAAGGAAAAGGAAAGCTCTGCCAATAAAGTGGTTGTTGATGATGAACAAACCCATGCCATGGAATGTGCTGATTTGGAGAACAAGCAGTCTTCACCGGATGGTGACAACCAAGTAATTTTGGATCCAAGTGATTCAGATAAATCTATTGAGGTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

421

Amino Acids

47.78

Weight (kDa)

6.55

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 515, 1162
AciI CCGC 1 cut(s) 48
AclWI GGATC 3 cut(s) 691, 1220, 1233
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 5 cut(s) 200, 210, 482, 771, 867
AfiI CCNNNNNNNGG 4 cut(s) 515, 583, 997, 1162
AgsI TTSAA 6 cut(s) 109, 184, 223, 316, 429, 632
AjnI CCWGG 4 cut(s) 526, 640, 892, 1043
AloI GAACNNNNNNTCC 2 cut(s) 820, 852
AluBI AGCT 7 cut(s) 144, 159, 361, 494, 706, 802, 1119
AluI AGCT 7 cut(s) 144, 159, 361, 494, 706, 802, 1119
Alw21I GWGCWC 2 cut(s) 599, 901
Alw44I GTGCAC 1 cut(s) 595
AlwI GGATC 3 cut(s) 691, 1220, 1233
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 4 cut(s) 524, 638, 979, 999
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 706, 802
ApoI RAATTY 1 cut(s) 223
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 4 cut(s) 410, 505, 524, 638
AsuHPI GGTGA 3 cut(s) 286, 1188, 1217
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 2 cut(s) 410, 505
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 1225
BbsI GAAGAC 1 cut(s) 1185
Bbv12I GWGCWC 2 cut(s) 599, 901
BbvI GCAGC 2 cut(s) 693, 789
BccI CCATC 3 cut(s) 285, 317, 1196
BciT130I CCWGG 4 cut(s) 528, 642, 894, 1045
BclI TGATCA 1 cut(s) 90
BfmI CTRYAG 2 cut(s) 444, 657
BisI GCNGC 3 cut(s) 49, 707, 803
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 3 cut(s) 50, 708, 804
Bme1390I CCNGG 4 cut(s) 528, 642, 894, 1045
Bme18I GGWCC 2 cut(s) 410, 505
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 4 cut(s) 410, 505, 524, 638
BmiI GGNNCC 4 cut(s) 411, 412, 507, 1227
BmrFI CCNGG 4 cut(s) 528, 642, 894, 1045
BmsI GCATC 5 cut(s) 238, 314, 531, 851, 997
BpiI GAAGAC 1 cut(s) 1185
BpmI CTGGAG 3 cut(s) 549, 663, 686
Bpu1102I GCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 1043, 1161
BsaWI WCCGGW 1 cut(s) 1198
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bsc4I CCNNNNNNNGG 4 cut(s) 515, 583, 997, 1162
BseBI CCWGG 4 cut(s) 528, 642, 894, 1045
BseDI CCNNGG 2 cut(s) 1043, 1161
BseGI GGATG 4 cut(s) 301, 305, 328, 1207
BseLI CCNNNNNNNGG 4 cut(s) 515, 583, 997, 1162
BseMII CTCAG 5 cut(s) 48, 268, 726, 1017, 1023
BseRI GAGGAG 1 cut(s) 800
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 2 cut(s) 693, 789
BseYI CCCAGC 1 cut(s) 798
BsgI GTGCAG 2 cut(s) 692, 788
BshFI GGCC 4 cut(s) 526, 640, 981, 1001
BsiHKAI GWGCWC 2 cut(s) 599, 901
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 1199
BslFI GGGAC 2 cut(s) 423, 491
BslI CCNNNNNNNGG 4 cut(s) 515, 583, 997, 1162
BsmFI GGGAC 2 cut(s) 423, 491
BsnI GGCC 4 cut(s) 526, 640, 981, 1001
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 599, 901
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 4 cut(s) 42, 90, 696, 1225
Bsp1720I GCTNAGC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 1161
BspACI CCGC 1 cut(s) 48
BspANI GGCC 4 cut(s) 526, 640, 981, 1001
BspCNI CTCAG 5 cut(s) 49, 267, 725, 1018, 1024
BspLI GGNNCC 4 cut(s) 411, 412, 507, 1227
BspMAI CTGCAG 1 cut(s) 661
BspPI GGATC 3 cut(s) 691, 1220, 1233
BsrGI TGTACA 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 1043, 1161
BssMI GATC 4 cut(s) 42, 90, 696, 1225
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 1161
Bst2UI CCWGG 4 cut(s) 528, 642, 894, 1045
Bst4CI ACNGT 3 cut(s) 445, 557, 628
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 208
BstDEI CTNAG 6 cut(s) 57, 173, 254, 712, 1026, 1032
BstDSI CCRYGG 1 cut(s) 1161
BstEII GGTNACC 1 cut(s) 920
BstF5I GGATG 4 cut(s) 301, 305, 328, 1207
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 45, 93, 699, 1228
BstMBI GATC 4 cut(s) 42, 90, 696, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 45, 367, 1007
BstNI CCWGG 4 cut(s) 528, 642, 894, 1045
BstNSI RCATGY 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 920
BstSCI CCNGG 4 cut(s) 526, 640, 892, 1043
BstSFI CTRYAG 2 cut(s) 444, 657
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 2 cut(s) 693, 789
BstV2I GAAGAC 1 cut(s) 1185
BstX2I RGATCY 2 cut(s) 696, 1225
BstXI CCANNNNNNTGG 1 cut(s) 1132
BstYI RGATCY 2 cut(s) 696, 1225
BsuRI GGCC 4 cut(s) 526, 640, 981, 1001
BtgI CCRYGG 1 cut(s) 1161
BtsCI GGATG 4 cut(s) 301, 305, 328, 1207
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 2 cut(s) 441, 922
CaiI CAGNNNCTG 1 cut(s) 677
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 410, 505, 524, 638
CseI GACGC 1 cut(s) 35
Csp6I GTAC 5 cut(s) 199, 209, 481, 770, 866
CviAII CATG 3 cut(s) 133, 1157, 1162
CviQI GTAC 5 cut(s) 199, 209, 481, 770, 866
DdeI CTNAG 6 cut(s) 57, 173, 254, 712, 1026, 1032
DpnI GATC 4 cut(s) 44, 92, 698, 1227
DpnII GATC 4 cut(s) 42, 90, 696, 1225
EaeI YGGCCR 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 1161
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 410, 505
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 920
EcoO109I RGGNCCY 2 cut(s) 410, 524
EcoO65I GGTNACC 1 cut(s) 920
EcoRII CCWGG 4 cut(s) 526, 640, 892, 1043
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 1161
ErhI CCWWGG 1 cut(s) 1161
FaeI CATG 3 cut(s) 136, 1160, 1165
FaqI GGGAC 2 cut(s) 423, 491
FatI CATG 3 cut(s) 132, 1156, 1161
FauNDI CATATG 1 cut(s) 996
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 49, 707, 803
FokI GGATG 4 cut(s) 292, 308, 335, 1214
Fsp4HI GCNGC 3 cut(s) 49, 707, 803
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 49, 707, 803
GsaI CCCAGC 1 cut(s) 802
GsuI CTGGAG 3 cut(s) 549, 663, 686
HaeIII GGCC 4 cut(s) 526, 640, 981, 1001
HapII CCGG 1 cut(s) 1199
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 3 cut(s) 136, 1160, 1165
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 2 cut(s) 359, 492
HinfI GANTC 5 cut(s) 188, 985, 1015, 1101, 1235
HpaII CCGG 1 cut(s) 1199
HphI GGTGA 3 cut(s) 286, 1188, 1217
Hpy166II GTNNAC 5 cut(s) 86, 277, 464, 483, 597
Hpy188I TCNGA 8 cut(s) 58, 148, 156, 562, 715, 992, 1027, 1240
Hpy188III TCNNGA 3 cut(s) 344, 498, 937
Hpy8I GTNNAC 5 cut(s) 86, 277, 464, 483, 597
HpyAV CCTTC 1 cut(s) 515
HpyCH4III ACNGT 3 cut(s) 445, 557, 628
HpyCH4V TGCA 7 cut(s) 229, 305, 597, 659, 709, 746, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 367, 1007
HpyF3I CTNAG 6 cut(s) 57, 173, 254, 712, 1026, 1032
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 3 cut(s) 136, 1160, 1165
HspAI GCGC 1 cut(s) 368
KflI GGGWCCC 1 cut(s) 410
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 42, 90, 696, 1225
LmnI GCTCC 3 cut(s) 787, 1072, 1093
Lsp1109I GCAGC 2 cut(s) 693, 789
LweI GCATC 5 cut(s) 238, 314, 531, 851, 997
MaeIII GTNAC 5 cut(s) 247, 619, 909, 920, 1205
MalI GATC 4 cut(s) 44, 92, 698, 1227
MboI GATC 4 cut(s) 42, 90, 696, 1225
MboII GAAGA 7 cut(s) 22, 344, 547, 550, 734, 823, 1185
MflI RGATCY 2 cut(s) 696, 1225
MhlI GDGCHC 2 cut(s) 599, 901
MlsI TGGCCA 1 cut(s) 1001
MluCI AATT 9 cut(s) 109, 218, 223, 317, 337, 615, 857, 963, 1218
MluNI TGGCCA 1 cut(s) 1001
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 496, 1015
Mox20I TGGCCA 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 5 cut(s) 267, 567, 956, 966, 1261
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 3 cut(s) 48, 706, 802
MspI CCGG 1 cut(s) 1199
MspR9I CCNGG 4 cut(s) 528, 642, 894, 1045
MvaI CCWGG 4 cut(s) 528, 642, 894, 1045
MwoI GCNNNNNNNGC 3 cut(s) 45, 367, 1007
NcoI CCATGG 1 cut(s) 1161
NdeI CATATG 1 cut(s) 996
NdeII GATC 4 cut(s) 42, 90, 696, 1225
NlaIII CATG 3 cut(s) 136, 1160, 1165
NlaIV GGNNCC 4 cut(s) 411, 412, 507, 1227
NmuCI GTSAC 1 cut(s) 1205
NspI RCATGY 1 cut(s) 136
PfeI GAWTC 4 cut(s) 985, 1015, 1101, 1235
PflMI CCANNNNNTGG 2 cut(s) 515, 1162
PkrI GCNGC 3 cut(s) 50, 708, 804
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 4 cut(s) 526, 640, 892, 1043
PspEI GGTNACC 1 cut(s) 920
PspFI CCCAGC 1 cut(s) 798
PspGI CCWGG 4 cut(s) 526, 640, 892, 1043
PspN4I GGNNCC 4 cut(s) 411, 412, 507, 1227
PspPI GGNCC 4 cut(s) 410, 505, 524, 638
PspPPI RGGWCCY 1 cut(s) 410
PstI CTGCAG 1 cut(s) 661
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 696, 1225
PvuII CAGCTG 2 cut(s) 706, 802
RsaI GTAC 5 cut(s) 200, 210, 482, 771, 867
RsaNI GTAC 5 cut(s) 199, 209, 481, 770, 866
SaqAI TTAA 5 cut(s) 267, 567, 956, 966, 1261
SatI GCNGC 3 cut(s) 49, 707, 803
Sau3AI GATC 4 cut(s) 42, 90, 696, 1225
Sau96I GGNCC 4 cut(s) 410, 505, 524, 638
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 4 cut(s) 528, 642, 894, 1045
SduI GDGCHC 2 cut(s) 599, 901
SfaNI GCATC 5 cut(s) 238, 314, 531, 851, 997
SfcI CTRYAG 2 cut(s) 444, 657
SinI GGWCC 2 cut(s) 410, 505
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 9 cut(s) 109, 218, 223, 317, 337, 615, 857, 963, 1218
SsiI CCGC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 526, 640, 892, 1043
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 3 cut(s) 445, 557, 628
TaqI TCGA 3 cut(s) 499, 809, 901
TasI AATT 9 cut(s) 109, 218, 223, 317, 337, 615, 857, 963, 1218
TatI WGTACW 2 cut(s) 208, 480
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 4 cut(s) 985, 1015, 1101, 1235
Tru1I TTAA 5 cut(s) 267, 567, 956, 966, 1261
Tru9I TTAA 5 cut(s) 267, 567, 956, 966, 1261
TscAI CASTG 2 cut(s) 448, 922
TseFI GTSAC 1 cut(s) 1205
TseI GCWGC 2 cut(s) 706, 802
Tsp45I GTSAC 1 cut(s) 1205
TspDTI ATGAA 7 cut(s) 23, 180, 402, 491, 597, 605, 1161
TspRI CASTG 2 cut(s) 448, 922
Van91I CCANNNNNTGG 2 cut(s) 515, 1162
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 410, 505
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.