Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8006356.1

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Forward (+)

117 .. 455

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8006356.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgaagccgaagaacaccgccacagaaaccagcggcgagtcccgattcttgggaaccatctccgcttcatcgattcgaaacctcctccccagatccatctcaaccaagcacggcaaatccttcttcagccacaaagtcgccacgccaaatgccgaaaacacccctcctcctaaccctaacatccagcccggcggcgacgaatctgatttcgctaccaagccgctaccagtgccgtccgatttgcccaagtctccgaccgccgccgctcagaacattccggcaaaggtacttaagaaatggagtagcttaaaattactattttattgttctgtaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

112

Amino Acids

12.0

Weight (kDa)

9.87

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	266
AciI	CCGC	8 cut(s)	18, 33, 63, 192, 221, 258, 261, 264
AclWI	GGATC	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	290
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	189
AsuII	TTCGAA	1 cut(s)	76
BccI	CCATC	2 cut(s)	65, 104
BceAI	ACGGC	2 cut(s)	127, 217
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	5 cut(s)	34, 193, 221, 261, 264
BlsI	GCNGC	5 cut(s)	35, 194, 222, 262, 265
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	71
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	74, 156
Bsh1285I	CGRYCG	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	189, 278
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	8 cut(s)	18, 33, 63, 192, 221, 258, 261, 264
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	76
BspTI	CTTAAG	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	92
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	287
CviJI	RGCY	5 cut(s)	7, 129, 187, 220, 306
CviKI_1	RGCY	5 cut(s)	7, 129, 187, 220, 306
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	109
FaqI	GGGAC	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	34, 193, 221, 261, 264
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	5 cut(s)	34, 193, 221, 261, 264
GluI	GCNGC	5 cut(s)	34, 193, 221, 261, 264
HapII	CCGG	2 cut(s)	189, 278
HinfI	GANTC	4 cut(s)	38, 45, 73, 200
HpaII	CCGG	2 cut(s)	189, 278
Hpy188I	TCNGA	4 cut(s)	205, 238, 255, 270
Hpy188III	TCNNGA	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	43, 103, 197, 202, 240, 291
MalI	GATC	1 cut(s)	94
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	22, 115
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	2 cut(s)	311, 333
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	92, 95, 174, 177
MseI	TTAA	2 cut(s)	291, 308
MspA1I	CMGCKG	1 cut(s)	33
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	189, 278
MspR9I	CCNGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	45, 73, 200
PkrI	GCNGC	5 cut(s)	35, 194, 222, 262, 265
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	291, 308
SatI	GCNGC	5 cut(s)	34, 193, 221, 261, 264
Sau3AI	GATC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	3 cut(s)	84, 288, 308
SfuI	TTCGAA	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	311, 333
SsiI	CCGC	8 cut(s)	18, 33, 63, 192, 221, 258, 261, 264
StyD4I	CCNGG	1 cut(s)	187
TaqI	TCGA	2 cut(s)	71, 76
TasI	AATT	2 cut(s)	311, 333
TauI	GCSGC	5 cut(s)	36, 195, 223, 263, 266
TfiI	GAWTC	3 cut(s)	45, 73, 200
Tru1I	TTAA	2 cut(s)	291, 308
Tru9I	TTAA	2 cut(s)	291, 308
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	17, 57
TspRI	CASTG	1 cut(s)	234
Vha464I	CTTAAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.