Rh4DG287000

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001197
Physical Location & Seq
Reverse (-)
50790734 .. 50791800
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG287000.1

Sequence Viewer

Length: 453 bp
ATGCGGTCTTCTCCCTCTGTACTTTTCGCGAAGGCACCGGAGGAGATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGAGTCATAGGTTGTGGACTGTTTGGAGATGGGATGAGATTGTATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTTTCCGGATTTTCTTCTAAAGTTTGATGCACTCTCTCTGTTTCATTATGAACAAATTTACTTTTATAGGGGACCTGATAAAATGGCTTCAGTGCCAGATCTCACTATTAATATTGAGGATAACCTACAAATGGAAATGAAGTGCACAAGCCATTTGTCCGAAATGGTAACAAATGTTGATGATGGGCCTGGAGAGAAGAAGATGCTCAAGGAGAGCTATTCTGAATCAATGTCGACATGTATATACGGTATAGTCACTATTTCTTTTACAACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

150

Amino Acids

17.39

Weight (kDa)

5.02

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 407
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 410
AgsI TTSAA 3 cut(s) 73, 89, 151
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 1 cut(s) 390
AluI AGCT 1 cut(s) 390
Alw21I GWGCWC 1 cut(s) 320
Alw44I GTGCAC 1 cut(s) 316
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 1 cut(s) 359
ApaLI GTGCAC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 228
AseI ATTAAT 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 245, 359
AvaII GGWCC 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 320
BccI CCATC 3 cut(s) 120, 152, 350
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 151
BfuI GTATCC 1 cut(s) 151
BglII AGATCT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 245, 359
BmiI GGNNCC 2 cut(s) 36, 246
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 190, 366
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 37, 178
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 136, 163
BseLI CCNNNNNNNGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 361
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 2 cut(s) 38, 179
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 271
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 361
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 36, 246
BspT107I GGYRCC 1 cut(s) 34
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 118, 422
BstF5I GGATG 2 cut(s) 136, 163
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 136, 163
BtsIMutI CAGTG 1 cut(s) 270
BtuMI TCGCGA 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 245, 359
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 59, 411
CviJI RGCY 4 cut(s) 260, 324, 361, 390
CviKI_1 RGCY 4 cut(s) 260, 324, 361, 390
CviQI GTAC 1 cut(s) 20
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 62, 414
FaiI YATR 8 cut(s) 60, 105, 222, 240, 412, 416, 418, 425
FaqI GGGAC 1 cut(s) 258
FatI CATG 2 cut(s) 58, 410
FblI GTMKAC 1 cut(s) 407
FokI GGATG 2 cut(s) 143, 170
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 361
HapII CCGG 2 cut(s) 38, 179
Hin1II CATG 2 cut(s) 62, 414
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 3 cut(s) 100, 166, 398
HpaII CCGG 2 cut(s) 38, 179
Hpy166II GTNNAC 3 cut(s) 114, 318, 408
Hpy188I TCNGA 2 cut(s) 334, 397
Hpy188III TCNNGA 2 cut(s) 28, 179
Hpy8I GTNNAC 3 cut(s) 114, 318, 408
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 118, 422
HpyCH4V TGCA 3 cut(s) 58, 203, 318
Hsp92II CATG 2 cut(s) 62, 414
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 51, 192, 261, 282, 348, 375
LweI GCATC 2 cut(s) 190, 366
MaeIII GTNAC 2 cut(s) 340, 427
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 77, 179, 382, 385
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 4 cut(s) 84, 152, 172, 228
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 5 cut(s) 25, 34, 154, 156, 283
MroI TCCGGA 1 cut(s) 178
MseI TTAA 1 cut(s) 282
MspI CCGG 2 cut(s) 38, 179
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 29
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 62, 414
NlaIV GGNNCC 2 cut(s) 36, 246
NmuCI GTSAC 1 cut(s) 427
NruI TCGCGA 1 cut(s) 29
NspI RCATGY 1 cut(s) 414
PciI ACATGT 1 cut(s) 410
PfeI GAWTC 2 cut(s) 166, 398
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 245
PscI ACATGT 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 36, 246
PspPI GGNCC 2 cut(s) 245, 359
PspPPI RGGWCCY 1 cut(s) 245
PsuI RGATCY 1 cut(s) 271
RruI TCGCGA 1 cut(s) 29
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 245, 359
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 320
SetI ASST 4 cut(s) 110, 250, 300, 392
SfaNI GCATC 2 cut(s) 190, 366
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 4 cut(s) 84, 152, 172, 228
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 118, 422
TaqI TCGA 1 cut(s) 407
TasI AATT 4 cut(s) 84, 152, 172, 228
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 2 cut(s) 166, 398
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 4 cut(s) 78, 206, 237, 326
TspRI CASTG 1 cut(s) 270
VneI GTGCAC 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 245
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 228
XceI RCATGY 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.