Rh3CG370900

DUF4210

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
47450416 .. 47453275
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG370900.1

Sequence Viewer

Length: 459 bp
ATGCCAAAAAAGCCGCTTTCACCTAACCCTTACATCCAAGCTGACCACGATTCAGCTTTCGCAACCAAGCCGCTACCAGTACTGTTCGATTTGCCCAAATCTCCGACCTCTGCCGCTCAGAACATTCCGGTGAAGGTTTGTTCCGTACTTCATTTAGCATGGATGTTGATGTTGCATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGGTTCTAAGTAATCCTGAAAAGACACCGATTCATACTTTCCTTTGCAACTATGATTTAAGTGACATGCCGACTGGTACCAAAGATGTTGGGCTTTTTTTACCTATACATGGTTCTGCTCCTGATATTGCTGGACAGATCAAAGTTTCAAACTTTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGAACACCTGTTATCCATGTTTATATGTGATCCTTTTATTGGAAATTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.68

Weight (kDa)

5.56

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 116
AciI CCGC 3 cut(s) 14, 71, 114
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 448
AfaI GTAC 3 cut(s) 81, 147, 292
AfiI CCNNNNNNNGG 2 cut(s) 323, 443
AgsI TTSAA 3 cut(s) 190, 206, 363
AluBI AGCT 3 cut(s) 41, 56, 404
AluI AGCT 3 cut(s) 41, 56, 404
AlwI GGATC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 448
Asp718I GGTACC 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 12, 142
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 189
BisI GCNGC 3 cut(s) 14, 71, 114
BlsI GCNGC 3 cut(s) 15, 72, 115
BmcAI AGTACT 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 443
Bse1I ACTGG 2 cut(s) 77, 292
BseGI GGATG 2 cut(s) 33, 168
BseLI CCNNNNNNNGG 2 cut(s) 323, 443
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 77, 292
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 323, 443
Bsp143I GATC 2 cut(s) 351, 433
BspACI CCGC 3 cut(s) 14, 71, 114
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 116
BsrI ACTGG 2 cut(s) 77, 292
BssMI GATC 2 cut(s) 351, 433
Bst4CI ACNGT 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 117, 221
BstF5I GGATG 2 cut(s) 33, 168
BstKTI GATC 2 cut(s) 354, 436
BstMBI GATC 2 cut(s) 351, 433
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 33, 168
Csp6I GTAC 3 cut(s) 80, 146, 291
CviAII CATG 6 cut(s) 159, 176, 280, 323, 421, 456
CviJI RGCY 6 cut(s) 13, 41, 56, 70, 307, 404
CviKI_1 RGCY 6 cut(s) 13, 41, 56, 70, 307, 404
CviQI GTAC 3 cut(s) 80, 146, 291
DdeI CTNAG 2 cut(s) 117, 221
DpnI GATC 2 cut(s) 353, 435
DpnII GATC 2 cut(s) 351, 433
FaeI CATG 6 cut(s) 162, 179, 283, 326, 424, 459
FatI CATG 6 cut(s) 158, 175, 279, 322, 420, 455
Fnu4HI GCNGC 3 cut(s) 14, 71, 114
FokI GGATG 2 cut(s) 20, 175
Fsp4HI GCNGC 3 cut(s) 14, 71, 114
GluI GCNGC 3 cut(s) 14, 71, 114
HapII CCGG 1 cut(s) 128
Hin1II CATG 6 cut(s) 162, 179, 283, 326, 424, 459
HinfI GANTC 2 cut(s) 50, 244
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 12, 142
Hpy188I TCNGA 2 cut(s) 105, 120
Hpy188III TCNNGA 2 cut(s) 230, 335
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 175, 261, 371, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 117, 221
Hsp92II CATG 6 cut(s) 162, 179, 283, 326, 424, 459
KpnI GGTACC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 351, 433
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 8 cut(s) 90, 141, 200, 243, 273, 330, 348, 425
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 353, 435
MbiI CCGCTC 1 cut(s) 116
MboI GATC 2 cut(s) 351, 433
MboII GAAGA 1 cut(s) 194
MluCI AATT 2 cut(s) 201, 448
MmeI TCCRAC 2 cut(s) 128, 378
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 351, 433
NlaIII CATG 6 cut(s) 162, 179, 283, 326, 424, 459
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 283
PfeI GAWTC 2 cut(s) 50, 244
PkrI GCNGC 3 cut(s) 15, 72, 115
PspN4I GGNNCC 1 cut(s) 292
RsaI GTAC 3 cut(s) 81, 147, 292
RsaNI GTAC 3 cut(s) 80, 146, 291
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 3 cut(s) 14, 71, 114
Sau3AI GATC 2 cut(s) 351, 433
ScaI AGTACT 1 cut(s) 81
SetI ASST 9 cut(s) 25, 43, 58, 110, 138, 219, 319, 406, 414
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 2 cut(s) 201, 448
SsiI CCGC 3 cut(s) 14, 71, 114
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 201, 448
TatI WGTACW 1 cut(s) 79
TauI GCSGC 3 cut(s) 16, 73, 116
TfiI GAWTC 2 cut(s) 50, 244
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 140, 195, 236
TspGWI ACGGA 2 cut(s) 133, 407
XapI RAATTY 1 cut(s) 448
XceI RCATGY 1 cut(s) 283
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.