Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

28560371 .. 28562979

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1204900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTTGAAGGGGAGCAGAGTGAAGTCAATGAACGAGACACAGAACATGGATTCCAATGTGACAATTTCTGAGGCTGATGGGAAGAGCTTGCTGGAGAACTCTGGAAGTGAAAGCTTCTATCAGAGACTCAACAAGTTGCATAACTCATCTGGGCTGAACCTCCTTTTTGATCTCAGACAATCAACATTGGACTTGCATCTGTTTTACAAAGAAGTTACTGCAAGAGGAGGGTTTATTCAGGTTACCACTGATGAGAGATGGGGCGAAGTTGCACTCGCCTTAAAATTGGACGGGGATAATCTGCAGGATCCTCAACCTCTGTTGAAGCTTTACGCGCTCTTTCTTTACCAGTATGAGCAACTTTACTACTACAGGGAACCCCATGCGAAAGCTGCTTCTACTCTAGGTCATGGTATTTATAGTATTGGGGATAGCTCAGCAATGGAAGGGCAGTGCAGTGATAATTCATGTCAGATGTTACCGAATCTTGAAAATGCTCTTGCAGAGAAGAAGATGCCCAAAAAGGACTTTCAACCAACACTGATAGGTTCAACATCTTCAGAACAGAAACTATTCCCCCAGCTAAGTTCAAAGAGAAAAGAGATGAAAAAGCGTTGTGGCGCTCCTCGAGGGGCACAAAGTGGTTATCATATCTACCTCAGGAAAGAATGCGAAAGGCTGAAAAGTACTGATGCAGGGAAACTGAAGGGTCAAAATTTCCGAGCCATGGCAGACAATGCATGGAGATCCTTCTCTGAGACTGAGAAACTGCCATACATTGAGGCAAGTAAGAAGGTTAACGGAAAACGACTGGCTCAAGAAGTGACTGCTGATGAGGAAAACCAGGGCATGCAAAATGCAGAGAGGGAGAAAAAGCCTTCGCTCAATAGGGACTGCCACTTAACTAACCAGAAGATAATGTGGTTCACTAAGCAAACGAAGGAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box HMG_box_2

Protein Analysis

317

Amino Acids

35.9

Weight (kDa)

8.87

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	36 - 119	6.9e-12	ARID/BRIGHT DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	627
AccII	CGCG	1 cut(s)	335
AclWI	GGATC	3 cut(s)	302, 315, 741
AcsI	RAATTY	1 cut(s)	715
AcuI	CTGAAG	2 cut(s)	543, 725
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	1 cut(s)	727
AgsI	TTSAA	6 cut(s)	7, 325, 491, 533, 552, 591
AjnI	CCWGG	1 cut(s)	843
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	6 cut(s)	87, 114, 328, 392, 435, 583
AluI	AGCT	6 cut(s)	87, 114, 328, 392, 435, 583
Alw26I	GTCTC	3 cut(s)	29, 118, 752
AlwI	GGATC	3 cut(s)	302, 315, 741
Ama87I	CYCGRG	1 cut(s)	627
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	715
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	2 cut(s)	337, 623
AvaI	CYCGRG	1 cut(s)	627
AxyI	CCTNAGG	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	637
BamHI	GGATCC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	71, 252
BciT130I	CCWGG	1 cut(s)	845
BcoDI	GTCTC	3 cut(s)	29, 118, 752
BfaI	CTAG	2 cut(s)	404, 949
BfmI	CTRYAG	2 cut(s)	302, 370
BfoI	RGCGCY	1 cut(s)	624
BisI	GCNGC	1 cut(s)	393
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	845
BmeT110I	CYCGRG	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	309, 378
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	3 cut(s)	205, 504, 682
BpmI	CTGGAG	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	726, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	2 cut(s)	349, 816
Bse21I	CCTNAGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	2 cut(s)	726, 844
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	6 cut(s)	60, 187, 450, 673, 747, 753
BseNI	ACTGG	2 cut(s)	349, 816
BseRI	GAGGAG	2 cut(s)	240, 615
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	3 cut(s)	29, 118, 752
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	169, 307, 746
Bsp1720I	GCTNAGC	1 cut(s)	436
Bsp19I	CCATGG	1 cut(s)	726
BspCNI	CTCAG	6 cut(s)	61, 186, 449, 672, 748, 754
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	309, 378
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	3 cut(s)	302, 315, 741
BspQI	GCTCTTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	349, 816
BssECI	CCNNGG	2 cut(s)	726, 844
BssMI	GATC	3 cut(s)	169, 307, 746
BssT1I	CCWWGG	1 cut(s)	726
Bst2UI	CCWGG	1 cut(s)	845
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	89, 851
BstDEI	CTNAG	8 cut(s)	69, 173, 436, 584, 659, 756, 762, 930
BstDSI	CCRYGG	1 cut(s)	726
BstEII	GGTNACC	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	337, 623
BstKTI	GATC	3 cut(s)	172, 310, 749
BstMAI	GTCTC	3 cut(s)	29, 118, 752
BstMBI	GATC	3 cut(s)	169, 307, 746
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 392, 737
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	853
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	2 cut(s)	302, 370
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	307, 746
BstYI	RGATCY	2 cut(s)	307, 746
Bsu36I	CCTNAGG	1 cut(s)	659
BtgI	CCRYGG	1 cut(s)	726
BtsI	GCAGTG	2 cut(s)	458, 463
BtsIMutI	CAGTG	4 cut(s)	246, 458, 463, 539
Cac8I	GCNNGC	2 cut(s)	89, 851
CfoI	GCGC	2 cut(s)	337, 623
Csp6I	GTAC	1 cut(s)	687
CviAII	CATG	7 cut(s)	46, 383, 410, 468, 727, 741, 850
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	8 cut(s)	69, 173, 436, 584, 659, 756, 762, 930
DpnI	GATC	3 cut(s)	171, 309, 748
DpnII	GATC	3 cut(s)	169, 307, 746
DraIII	CACNNNGTG	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	726
Eco57I	CTGAAG	2 cut(s)	543, 725
Eco81I	CCTNAGG	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	627
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	1 cut(s)	726
EcoT22I	ATGCAT	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	7 cut(s)	49, 386, 413, 471, 730, 744, 853
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	7 cut(s)	45, 382, 409, 467, 726, 740, 849
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	404, 949
GlaI	GCGC	2 cut(s)	336, 622
GluI	GCNGC	1 cut(s)	393
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	624
HhaI	GCGC	2 cut(s)	337, 623
Hin1II	CATG	7 cut(s)	49, 386, 413, 471, 730, 744, 853
Hin6I	GCGC	2 cut(s)	335, 621
HinP1I	GCGC	2 cut(s)	335, 621
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	2 cut(s)	112, 326
HinfI	GANTC	3 cut(s)	50, 126, 484
HpaI	GTTAAC	1 cut(s)	799
Hpy166II	GTNNAC	2 cut(s)	799, 927
Hpy188I	TCNGA	7 cut(s)	70, 123, 176, 474, 562, 722, 757
Hpy188III	TCNNGA	4 cut(s)	102, 488, 661, 818
Hpy8I	GTNNAC	2 cut(s)	799, 927
HpyAV	CCTTC	6 cut(s)	440, 700, 760, 787, 888, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 392, 737
HpyF3I	CTNAG	8 cut(s)	69, 173, 436, 584, 659, 756, 762, 930
Hsp92II	CATG	7 cut(s)	49, 386, 413, 471, 730, 744, 853
HspAI	GCGC	2 cut(s)	335, 621
KspAI	GTTAAC	1 cut(s)	799
Kzo9I	GATC	3 cut(s)	169, 307, 746
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	12, 628
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	3 cut(s)	205, 504, 682
MaeI	CTAG	2 cut(s)	404, 949
MaeIII	GTNAC	5 cut(s)	58, 214, 241, 477, 823
MalI	GATC	3 cut(s)	171, 309, 748
MboI	GATC	3 cut(s)	169, 307, 746
MboII	GAAGA	5 cut(s)	94, 520, 523, 549, 925
MflI	RGATCY	2 cut(s)	307, 746
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	4 cut(s)	63, 284, 463, 715
MlyI	GAGTC	1 cut(s)	120
Mph1103I	ATGCAT	1 cut(s)	742
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	3 cut(s)	281, 798, 902
MspR9I	CCNGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	334, 392, 737
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	3 cut(s)	169, 307, 746
NlaIII	CATG	7 cut(s)	49, 386, 413, 471, 730, 744, 853
NlaIV	GGNNCC	2 cut(s)	309, 378
NmuCI	GTSAC	2 cut(s)	58, 823
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	853
PaeI	GCATGC	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	50, 484
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	843
PspEI	GGTNACC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	2 cut(s)	309, 378
PspXI	VCTCGAGB	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	307, 746
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	281, 798, 902
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	169, 307, 746
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	205, 504, 682
SfcI	CTRYAG	2 cut(s)	302, 370
Sfr274I	CTCGAG	1 cut(s)	627
SlaI	CTCGAG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	627, 816
SmoI	CTYRAG	2 cut(s)	627, 816
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	4 cut(s)	63, 284, 463, 715
SspMI	CTAG	2 cut(s)	404, 949
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	726
TaqI	TCGA	1 cut(s)	628
TasI	AATT	4 cut(s)	63, 284, 463, 715
TatI	WGTACW	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	50, 484
Tru1I	TTAA	3 cut(s)	281, 798, 902
Tru9I	TTAA	3 cut(s)	281, 798, 902
TscAI	CASTG	4 cut(s)	253, 458, 463, 546
TseFI	GTSAC	2 cut(s)	58, 823
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	58, 823
TspDTI	ATGAA	3 cut(s)	44, 456, 620
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	4 cut(s)	253, 458, 463, 546
XapI	RAATTY	1 cut(s)	715
XceI	RCATGY	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	404, 949
ZrmI	AGTACT	1 cut(s)	688
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.