Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

74842217 .. 74843647

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG474000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACGCGAAGAACACCCCCACAGAGACCACCGGCGAGTCTCGATTCTTGGGAACTATCTCCGCCTCATCGATTCAAAACCTCCACCCCAGATCCATCTCAACCAAGCACGGAAAATCCTTCTTCAGCCCCAAAATTGCCGCATTAATTGGCCCAAAATTGCTCGCCCTCGAAAGCGTTTCGCCGAGCTCGTTAAAGGACAAGGTTTATAGGATCTTCTGCAAGGAAAAGCGTAAGCTCGCCGGTAGAAAGGATCAACAGACCGGCCTCCGATCACTTTATCTATTCTTTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTCAGTTGATATTTTCGTTTGTGATGAAATCCCATGTTGGACATTCAATCAAAGATTGTAGCTTTGGGGTTGATGGTGGGTTTGATTTGAAATGTGTTTTTACAGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

143

Amino Acids

15.64

Weight (kDa)

9.79

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	63, 141
AclWI	GGATC	3 cut(s)	87, 221, 261
AcuI	CTGAAG	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	77, 366, 409
AluBI	AGCT	3 cut(s)	189, 238, 381
AluI	AGCT	3 cut(s)	189, 238, 381
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	20, 45
AlwI	GGATC	3 cut(s)	87, 221, 261
AoxI	GGCC	2 cut(s)	151, 265
AseI	ATTAAT	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	2 cut(s)	104, 386
BcoDI	GTCTC	2 cut(s)	20, 45
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	20
Bse118I	RCCGGY	3 cut(s)	32, 242, 263
BseCI	ATCGAT	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	153, 267
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	33, 243, 264
BsmAI	GTCTC	2 cut(s)	20, 45
BsnI	GGCC	2 cut(s)	153, 267
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	4 cut(s)	92, 213, 253, 272
BspACI	CCGC	2 cut(s)	63, 141
BspANI	GGCC	2 cut(s)	153, 267
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	8
BspPI	GGATC	3 cut(s)	87, 221, 261
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	3 cut(s)	32, 242, 263
BssAI	RCCGGY	3 cut(s)	32, 242, 263
BssMI	GATC	4 cut(s)	92, 213, 253, 272
BstC8I	GCNNGC	2 cut(s)	165, 240
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	4 cut(s)	95, 216, 256, 275
BstMAI	GTCTC	2 cut(s)	20, 45
BstMBI	GATC	4 cut(s)	92, 213, 253, 272
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	2 cut(s)	92, 213
BstYI	RGATCY	2 cut(s)	92, 213
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	153, 267
BsuTUI	ATCGAT	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	165, 240
Cfr10I	RCCGGY	3 cut(s)	32, 242, 263
Cfr13I	GGNCC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	71
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	6 cut(s)	129, 153, 189, 238, 267, 381
CviKI_1	RGCY	6 cut(s)	129, 153, 189, 238, 267, 381
DpnI	GATC	4 cut(s)	94, 215, 255, 274
DpnII	GATC	4 cut(s)	92, 213, 253, 272
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	356
FaiI	YATR	3 cut(s)	210, 354, 430
FatI	CATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	153, 267
HapII	CCGG	3 cut(s)	33, 243, 264
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	3 cut(s)	38, 45, 73
HpaII	CCGG	3 cut(s)	33, 243, 264
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	4 cut(s)	92, 213, 253, 272
LpnPI	CCDG	5 cut(s)	46, 103, 256, 277, 408
MalI	GATC	4 cut(s)	94, 215, 255, 274
MboI	GATC	4 cut(s)	92, 213, 253, 272
MboII	GAAGA	4 cut(s)	22, 115, 208, 291
MflI	RGATCY	2 cut(s)	92, 213
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	135, 147, 158
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	76, 92, 179, 278
MseI	TTAA	2 cut(s)	146, 194
MspI	CCGG	3 cut(s)	33, 243, 264
MvnI	CGCG	1 cut(s)	8
NdeII	GATC	4 cut(s)	92, 213, 253, 272
NlaIII	CATG	1 cut(s)	356
NmeAIII	GCCGAG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	45, 73
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	92, 213
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	146, 194
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	92, 213, 253, 272
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	6 cut(s)	84, 191, 207, 240, 383, 427
SgrAI	CRCCGGYG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	135, 147, 158
SsiI	CCGC	2 cut(s)	63, 141
SstI	GAGCTC	1 cut(s)	191
TaqI	TCGA	3 cut(s)	43, 71, 171
TasI	AATT	3 cut(s)	135, 147, 158
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	45, 73
Tru1I	TTAA	2 cut(s)	146, 194
Tru9I	TTAA	2 cut(s)	146, 194
TspDTI	ATGAA	2 cut(s)	17, 359
TspGWI	ACGGA	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.