Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

68862087 .. 68862828

Gene Structure 742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG488300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAACGCAAAGAACAATACCCCCACAGAGACCACCGGCGAGTCTCGATTCCTGGGAACCATCTCCACCTCATCGATTCGAAACCTCCACCCCAGATCCATCTCAACCAAGCACGGAAAATCCTTCTTCAGCCCCAAAATTGCCGCACCAACTGTCGAGTTGTTGGGTTGTGCGAGTTGTTTGAAGCAATCTTTAATCATCTTGGATTCCAATCCACTCTCTTCTAGCTATACAGGTATGTTCCTCCGCTCCTTTCTCTTTATTCTGGTACCAGTTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

94

Amino Acids

10.16

Weight (kDa)

9.78

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	249
AciI	CCGC	2 cut(s)	144, 247
AclWI	GGATC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	23, 48
AlwI	GGATC	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	268
AsuII	TTCGAA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	268
BccI	CCATC	2 cut(s)	68, 107
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	23, 48
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	58, 270
BmrFI	CCNGG	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	23, 48
Bso31I	GGTCTC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	2 cut(s)	144, 247
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	58, 270
BspPI	GGATC	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	79
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	2 cut(s)	23, 48
BstMBI	GATC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	35
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	269
CviJI	RGCY	3 cut(s)	132, 228, 281
CviKI_1	RGCY	3 cut(s)	132, 228, 281
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	51
FaiI	YATR	2 cut(s)	231, 239
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	1 cut(s)	36
HinfI	GANTC	4 cut(s)	41, 48, 76, 206
HpaII	CCGG	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	6 cut(s)	38, 49, 65, 106, 219, 251
MaeI	CTAG	1 cut(s)	225
MalI	GATC	1 cut(s)	97
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	1 cut(s)	95
MboII	GAAGA	2 cut(s)	118, 213
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	79, 95, 254
MseI	TTAA	2 cut(s)	194, 283
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	58, 270
NspV	TTCGAA	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	48, 76, 206
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	58, 270
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	194, 283
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	4 cut(s)	71, 87, 230, 238
SfuI	TTCGAA	1 cut(s)	79
SgrAI	CRCCGGYG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	144, 247
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	4 cut(s)	46, 74, 79, 156
TasI	AATT	1 cut(s)	138
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	48, 76, 206
Tru1I	TTAA	2 cut(s)	194, 283
Tru9I	TTAA	2 cut(s)	194, 283
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	129
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.