Rh2AG504600

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001197
Physical Location & Seq
Reverse (-)
72727649 .. 72728859
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG504600.1

Sequence Viewer

Length: 297 bp
ATGAAGTTGAACAAGGATAGGAGATGGGATGAGACTGTATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTTTCCGGATTTTCTTCTAAAGCTTGATGCACTCTCTCTATTTCATTATGAACAGATTTACTTTTATAGGGGACCTGATAAATTGGCTTCTGTGCCAGATCTCACTATTAATATTGAGGATAACCTACAAATGGAAATGAAGTGCACAAGCCATTCGTCTCAAATGGTAACAAATGTTGATGATGGGCCTGGAGGGAAGAAGATGCTCAAGGAGGGCTATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

98

Amino Acids

11.3

Weight (kDa)

5.59

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 10, 49
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 26, 234
Alw44I GTGCAC 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 257
ApaLI GTGCAC 1 cut(s) 214
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 143, 257
AvaII GGWCC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 3 cut(s) 18, 50, 248
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 26, 234
BfuI GTATCC 1 cut(s) 49
BglII AGATCT 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 257
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 88, 264
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 34, 61
BseLI CCNNNNNNNGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 218
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 26, 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 218
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 144
BssMI GATC 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 37
BstF5I GGATG 2 cut(s) 34, 61
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 26, 234
BstMBI GATC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 34, 61
Cfr13I GGNCC 2 cut(s) 143, 257
CviJI RGCY 5 cut(s) 94, 158, 222, 259, 288
CviKI_1 RGCY 5 cut(s) 94, 158, 222, 259, 288
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 234
FaiI YATR 2 cut(s) 120, 138
FaqI GGGAC 1 cut(s) 156
FokI GGATG 2 cut(s) 41, 68
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 101, 216
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 90, 159, 180, 246, 273
LweI GCATC 2 cut(s) 88, 264
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 77, 280, 283
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 3 cut(s) 50, 70, 152
MnlI CCTC 5 cut(s) 52, 54, 181, 257, 277
MroI TCCGGA 1 cut(s) 76
MseI TTAA 2 cut(s) 180, 295
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 143
PshBI ATTAAT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 143, 257
PspPPI RGGWCCY 1 cut(s) 143
PsuI RGATCY 1 cut(s) 169
SaqAI TTAA 2 cut(s) 180, 295
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 143, 257
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 218
SetI ASST 3 cut(s) 96, 148, 198
SfaNI GCATC 2 cut(s) 88, 264
SgeI CNNG 9 cut(s) 25, 89, 107, 158, 179, 231, 272, 273, 292
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 50, 70, 152
SspI AATATT 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 37
TasI AATT 3 cut(s) 50, 70, 152
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 180, 295
Tru9I TTAA 2 cut(s) 180, 295
TspDTI ATGAA 4 cut(s) 17, 104, 135, 224
VneI GTGCAC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 143
VspI ATTAAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.