Rroxscaffold_6G00422040

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001197
Physical Location & Seq
Reverse (-)
43059467 .. 43062502
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422040.1

Sequence Viewer

Length: 618 bp
ATGGGAGGAGATTGCATCCTCTTTGAAATTGGATGGGGGAATCTCAATTATCCAGATATTCTTCTAAAGCTTTATGCACTCTTTCTGTTTCATTATGAACAGATTTACTTTTATAGGGGACCTGAGAAAGTGGCTTCAACGCCAGATCTCACTATTGATATTGAGGATAGCCCCCGAATGGAAATGAAGTGCACCAATCATTCATCTCAAATGGTAACAAATGTTGAAGATGGGCCTGGAGAGAAGAAGATTCTCAAGGAGAGCTGTTCTCAATCAATGTCGACAGGTTCGGCGTCTGCAGAAAAACAATCAGCACCAGAAGCAGAACAGAAGCATATCCCCCAGCTGCACTCAGAGAAAGAAGAGATATGGACAAAAGACATGCACTCATCAGCAGAAAACCAACTAGCAGTACCCGAAGCAGCACAGGAGCAGACCCCCCAGCTGCACTTGAAGAAAAAAGAGATGAGGAAAAGAGGTTCAGCATCAGCTGAAAAACAGTTGGCTGTACCCAGGAAAAAAGGGATGAAGAAGCCAGGTGCTCGACAAGGGATACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGGGAGATTAAAAAAAAATTCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

205

Amino Acids

23.11

Weight (kDa)

8.56

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 2 cut(s) 414, 510
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 5 cut(s) 26, 138, 227, 454, 612
AjnI CCWGG 3 cut(s) 235, 512, 535
AloI GAACNNNNNNTCC 2 cut(s) 463, 495
AluBI AGCT 5 cut(s) 70, 264, 346, 445, 491
AluI AGCT 5 cut(s) 70, 264, 346, 445, 491
Alw21I GWGCWC 2 cut(s) 194, 544
Alw44I GTGCAC 1 cut(s) 190
AoxI GGCC 1 cut(s) 233
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 346, 422, 445
ApoI RAATTY 1 cut(s) 607
AspS9I GGNCC 2 cut(s) 119, 233
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 194
Bbv12I GWGCWC 2 cut(s) 194, 544
BbvI GCAGC 3 cut(s) 333, 432, 434
BccI CCATC 2 cut(s) 27, 224
BciT130I CCWGG 3 cut(s) 237, 514, 537
BciVI GTATCC 1 cut(s) 546
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 1 cut(s) 546
BglII AGATCT 1 cut(s) 145
BisI GCNGC 3 cut(s) 347, 423, 446
BlsI GCNGC 3 cut(s) 348, 424, 447
Bme1390I CCNGG 3 cut(s) 237, 514, 537
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 119, 233
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 3 cut(s) 237, 514, 537
BmsI GCATC 2 cut(s) 24, 494
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 512
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseBI CCWGG 3 cut(s) 237, 514, 537
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 3 cut(s) 15, 38, 531
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 114, 366
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 333, 432, 434
BseYI CCCAGC 2 cut(s) 342, 441
BsgI GTGCAG 2 cut(s) 332, 431
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 194, 544
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 194, 544
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 115, 365
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 293
Bst2UI CCWGG 3 cut(s) 237, 514, 537
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 123, 352
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 3 cut(s) 15, 38, 531
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 3 cut(s) 237, 514, 537
BstNSI RCATGY 1 cut(s) 385
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 235, 512, 535
BstSFI CTRYAG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 333, 432, 434
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 3 cut(s) 15, 38, 531
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 119, 233
CseI GACGC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 413, 509
CviAII CATG 1 cut(s) 382
CviQI GTAC 2 cut(s) 413, 509
DdeI CTNAG 2 cut(s) 123, 352
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 3 cut(s) 235, 512, 535
FaeI CATG 1 cut(s) 385
FaiI YATR 6 cut(s) 75, 96, 114, 336, 370, 383
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 381
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 347, 423, 446
FokI GGATG 3 cut(s) 2, 45, 538
Fsp4HI GCNGC 3 cut(s) 347, 423, 446
FspBI CTAG 1 cut(s) 407
GluI GCNGC 3 cut(s) 347, 423, 446
GsaI CCCAGC 2 cut(s) 346, 445
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 235
HgaI GACGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 1 cut(s) 385
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 40, 250
Hpy166II GTNNAC 2 cut(s) 192, 282
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 53, 580
Hpy8I GTNNAC 2 cut(s) 192, 282
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4V TGCA 7 cut(s) 15, 77, 192, 299, 349, 385, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 123, 352
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 1 cut(s) 385
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 333, 432, 434
LweI GCATC 2 cut(s) 24, 494
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 2 cut(s) 214, 563
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 7 cut(s) 53, 239, 256, 259, 374, 466, 541
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 194, 544
MluCI AATT 3 cut(s) 27, 46, 607
MnlI CCTC 4 cut(s) 29, 157, 462, 470
MseI TTAA 1 cut(s) 599
MspA1I CMGCKG 3 cut(s) 346, 445, 491
MspR9I CCNGG 3 cut(s) 237, 514, 537
MvaI CCWGG 3 cut(s) 237, 514, 537
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 1 cut(s) 120
NspI RCATGY 1 cut(s) 385
PfeI GAWTC 2 cut(s) 40, 250
PkrI GCNGC 3 cut(s) 348, 424, 447
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 235, 512, 535
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 2 cut(s) 342, 441
PspGI CCWGG 3 cut(s) 235, 512, 535
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 2 cut(s) 119, 233
PspPPI RGGWCCY 1 cut(s) 119
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 3 cut(s) 346, 445, 491
RsaI GTAC 2 cut(s) 414, 510
RsaNI GTAC 2 cut(s) 413, 509
SalI GTCGAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 599
SatI GCNGC 3 cut(s) 347, 423, 446
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 119, 233
ScrFI CCNGG 3 cut(s) 237, 514, 537
SduI GDGCHC 2 cut(s) 194, 544
SetI ASST 9 cut(s) 72, 124, 266, 289, 348, 447, 481, 493, 541
SfaNI GCATC 2 cut(s) 24, 494
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 27, 46, 607
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 235, 512, 535
TaaI ACNGT 1 cut(s) 501
TaqI TCGA 2 cut(s) 281, 544
TasI AATT 3 cut(s) 27, 46, 607
TfiI GAWTC 2 cut(s) 40, 250
Tru1I TTAA 1 cut(s) 599
Tru9I TTAA 1 cut(s) 599
TscAI CASTG 1 cut(s) 565
TseI GCWGC 3 cut(s) 346, 422, 445
TspDTI ATGAA 5 cut(s) 80, 111, 192, 200, 542
TspRI CASTG 1 cut(s) 565
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 1 cut(s) 607
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.