Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

19575660 .. 19578096

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATTGCAATGTGACAGTTTCTGAGTCTGATGGGAAGAGCTTGCTGGAGAACTCGGAGATTGACAGCTTCTATCAGAGACTCAATAAGCTGCATACTTCATCTGGGCTCAACCTTGTTGGTTTTCAACTTTTCACCTTAAAATTTGAAGGGATGAAGTTGCAGCACAAGATATTAACTAGACCTATAACGGTTACTTTCCAGGTTACCGCTGATGAGAGATGGGGCGAAGTTGCACTCGCCTTAAAATTGGATTGTGACAGTCTGCAGGATTCTCAACCTCTCTTAAACCTTTACGCACTCGTTCTCTACCAGTATGAAAAACTTTACTACTACAGGGAACCTCAAGCGAAAGCTGCTTTTACTCTAGGTAGATGTAGGGATTATTCATCTCAGATGTTACCGAATCTTGAAAATTCTCATGTGGAGAAGACGACGCGCAAAGAGAATTGTCAGCCAATAGAACAGAAGCAGTTCCCCCAGCTGCACTCCCAGAAAAAAGAGATGAAAAAACGTGGCGGTTTTCCACGAGGGACACAGAGTGCTTATACTATCTTCCTCAGGAAAGAATGTGAGCGGTTGAAAAGTTCTGCTCCGGAGCTACTTAGGGGTCGAAGGGTCTTAGACTTGGCCGTCAGTGCATGGAGGTGCCTCTCTGAGAGAGAGAAACAGCCATATATTGAGGCAAGTAAGAGGGTTAAAGAAAAAAGAGTGGCTCAAGAAATGACGGGTGATGAGGAAAACCAGGGCATGCAAAATGCAGAAAGAGGAAAGAAGCCTTCATGTTCACGGAGCTGCCGCGCGGCTTTGCAATCTGATAGAGAAAAATCCTGTGTTCAAAATCTATCAGTGAACTTTCAAGAAAGTCTCCTGGAAGGGATTGACTGGAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box HMG_box_2

Protein Analysis

299

Amino Acids

34.35

Weight (kDa)

9.03

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	648
AccBSI	CCGCTC	1 cut(s)	577
AccII	CGCG	3 cut(s)	439, 801, 803
AccIII	TCCGGA	1 cut(s)	595
AciI	CCGC	5 cut(s)	210, 519, 577, 799, 803
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	143, 415
AdeI	CACNNNGTG	1 cut(s)	542
AgsI	TTSAA	6 cut(s)	128, 149, 413, 583, 839, 860
AjnI	CCWGG	3 cut(s)	201, 744, 870
AluBI	AGCT	7 cut(s)	42, 69, 91, 356, 484, 601, 795
AluI	AGCT	7 cut(s)	42, 69, 91, 356, 484, 601, 795
Alw26I	GTCTC	2 cut(s)	73, 872
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	595
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	5 cut(s)	91, 163, 356, 484, 795
ApoI	RAATTY	2 cut(s)	143, 415
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	441, 803
AsuHPI	GGTGA	2 cut(s)	127, 743
AxyI	CCTNAGG	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	5 cut(s)	78, 175, 343, 471, 782
BccI	CCATC	2 cut(s)	26, 216
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	3 cut(s)	203, 746, 872
BcoDI	GTCTC	2 cut(s)	73, 872
BfaI	CTAG	2 cut(s)	180, 368
BfmI	CTRYAG	2 cut(s)	266, 334
BisI	GCNGC	7 cut(s)	92, 164, 357, 485, 796, 799, 804
BlsI	GCNGC	7 cut(s)	93, 165, 358, 486, 797, 800, 805
Bme1390I	CCNGG	3 cut(s)	203, 746, 872
BmiI	GGNNCC	2 cut(s)	342, 650
BmrFI	CCNGG	3 cut(s)	203, 746, 872
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	330, 702
BsaJI	CCNNGG	1 cut(s)	745
BsaWI	WCCGGW	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	313, 890
Bse21I	CCTNAGG	1 cut(s)	560
Bse3DI	GCAATG	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	595
BseBI	CCWGG	3 cut(s)	203, 746, 872
BseDI	CCNNGG	1 cut(s)	745
BseGI	GGATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	4 cut(s)	15, 407, 574, 648
BseNI	ACTGG	2 cut(s)	313, 890
BseXI	GCAGC	5 cut(s)	78, 175, 343, 471, 782
BseYI	CCCAGC	1 cut(s)	480
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	3 cut(s)	439, 801, 803
BshFI	GGCC	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	1 cut(s)	547
BsmAI	GTCTC	2 cut(s)	73, 872
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	595
BspACI	CCGC	5 cut(s)	210, 519, 577, 799, 803
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	4 cut(s)	16, 406, 573, 649
BspEI	TCCGGA	1 cut(s)	595
BspFNI	CGCG	3 cut(s)	439, 801, 803
BspLI	GGNNCC	2 cut(s)	342, 650
BspMAI	CTGCAG	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	313, 890
BssECI	CCNNGG	1 cut(s)	745
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	203, 746, 872
Bst4CI	ACNGT	3 cut(s)	19, 193, 263
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	44, 752
BstDEI	CTNAG	6 cut(s)	24, 393, 560, 605, 622, 657
BstEII	GGTNACC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	3 cut(s)	439, 801, 803
BstHHI	GCGC	2 cut(s)	441, 803
BstMAI	GTCTC	2 cut(s)	73, 872
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 638
BstNI	CCWGG	3 cut(s)	203, 746, 872
BstNSI	RCATGY	1 cut(s)	754
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	3 cut(s)	201, 744, 870
BstSFI	CTRYAG	2 cut(s)	266, 334
BstUI	CGCG	3 cut(s)	439, 801, 803
BstV1I	GCAGC	5 cut(s)	78, 175, 343, 471, 782
BstV2I	GAAGAC	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	632
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	643, 855
Cac8I	GCNNGC	2 cut(s)	44, 752
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	2 cut(s)	441, 803
CseI	GACGC	1 cut(s)	445
CviAII	CATG	4 cut(s)	422, 642, 751, 783
DdeI	CTNAG	6 cut(s)	24, 393, 560, 605, 622, 657
DraIII	CACNNNGTG	1 cut(s)	542
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	205
EcoRII	CCWGG	3 cut(s)	201, 744, 870
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	4 cut(s)	425, 645, 754, 786
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	4 cut(s)	421, 641, 750, 782
Fnu4HI	GCNGC	7 cut(s)	92, 164, 357, 485, 796, 799, 804
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	7 cut(s)	92, 164, 357, 485, 796, 799, 804
FspBI	CTAG	2 cut(s)	180, 368
GlaI	GCGC	2 cut(s)	440, 802
GluI	GCNGC	7 cut(s)	92, 164, 357, 485, 796, 799, 804
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	445
HhaI	GCGC	2 cut(s)	441, 803
Hin1II	CATG	4 cut(s)	425, 645, 754, 786
Hin6I	GCGC	2 cut(s)	439, 801
HinP1I	GCGC	2 cut(s)	439, 801
HinfI	GANTC	4 cut(s)	26, 81, 272, 406
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	2 cut(s)	127, 743
Hpy166II	GTNNAC	2 cut(s)	788, 853
Hpy188I	TCNGA	7 cut(s)	25, 31, 58, 78, 396, 658, 817
Hpy188III	TCNNGA	5 cut(s)	410, 562, 596, 719, 860
Hpy8I	GTNNAC	2 cut(s)	788, 853
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	4 cut(s)	143, 609, 789, 869
HpyCH4III	ACNGT	3 cut(s)	19, 193, 263
HpyCH4IV	ACGT	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 638
HpyF3I	CTNAG	6 cut(s)	24, 393, 560, 605, 622, 657
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	425, 645, 754, 786
HspAI	GCGC	2 cut(s)	439, 801
Kpn2I	TCCGGA	1 cut(s)	595
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	3 cut(s)	598, 598, 792
Lsp1109I	GCAGC	5 cut(s)	78, 175, 343, 471, 782
MaeI	CTAG	2 cut(s)	180, 368
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	5 cut(s)	13, 193, 205, 257, 399
MbiI	CCGCTC	1 cut(s)	577
MboII	GAAGA	3 cut(s)	49, 442, 547
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	4, 143, 248, 415, 448
MlyI	GAGTC	2 cut(s)	35, 75
MroI	TCCGGA	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	5 cut(s)	140, 176, 245, 287, 699
MslI	CAYNNNNRTG	1 cut(s)	646
MspA1I	CMGCKG	2 cut(s)	212, 484
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	203, 746, 872
MvaI	CCWGG	3 cut(s)	203, 746, 872
MvnI	CGCG	3 cut(s)	439, 801, 803
MwoI	GCNNNNNNNGC	2 cut(s)	356, 638
NlaIII	CATG	4 cut(s)	425, 645, 754, 786
NlaIV	GGNNCC	2 cut(s)	342, 650
NmuCI	GTSAC	2 cut(s)	13, 257
NspI	RCATGY	1 cut(s)	754
PaeI	GCATGC	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	272, 406
PfoI	TCCNGGA	1 cut(s)	870
PkrI	GCNGC	7 cut(s)	93, 165, 358, 486, 797, 800, 805
PleI	GAGTC	2 cut(s)	34, 75
PpsI	GAGTC	2 cut(s)	34, 75
Psp6I	CCWGG	3 cut(s)	201, 744, 870
PspEI	GGTNACC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	3 cut(s)	201, 744, 870
PspN4I	GGNNCC	2 cut(s)	342, 650
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	5 cut(s)	140, 176, 245, 287, 699
SatI	GCNGC	7 cut(s)	92, 164, 357, 485, 796, 799, 804
SchI	GAGTC	2 cut(s)	35, 75
ScrFI	CCNGG	3 cut(s)	203, 746, 872
SduI	GDGCHC	1 cut(s)	111
SfcI	CTRYAG	2 cut(s)	266, 334
SmiMI	CAYNNNNRTG	1 cut(s)	646
SmlI	CTYRAG	2 cut(s)	345, 717
SmoI	CTYRAG	2 cut(s)	345, 717
SphI	GCATGC	1 cut(s)	754
Sse9I	AATT	5 cut(s)	4, 143, 248, 415, 448
SsiI	CCGC	5 cut(s)	210, 519, 577, 799, 803
SspMI	CTAG	2 cut(s)	180, 368
StyD4I	CCNGG	3 cut(s)	201, 744, 870
TaaI	ACNGT	3 cut(s)	19, 193, 263
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	613
TasI	AATT	5 cut(s)	4, 143, 248, 415, 448
TauI	GCSGC	2 cut(s)	801, 806
TfiI	GAWTC	2 cut(s)	272, 406
Tru1I	TTAA	5 cut(s)	140, 176, 245, 287, 699
Tru9I	TTAA	5 cut(s)	140, 176, 245, 287, 699
TscAI	CASTG	2 cut(s)	643, 855
TseFI	GTSAC	2 cut(s)	13, 257
TseI	GCWGC	5 cut(s)	91, 163, 356, 484, 795
Tsp45I	GTSAC	2 cut(s)	13, 257
TspDTI	ATGAA	7 cut(s)	17, 90, 170, 333, 378, 521, 771
TspGWI	ACGGA	1 cut(s)	805
TspRI	CASTG	2 cut(s)	643, 855
XapI	RAATTY	2 cut(s)	143, 415
XceI	RCATGY	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	180, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.