Rh7AG251600

DUF4210

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001197
Physical Location & Seq
Forward (+)
25110057 .. 25118763
8707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG251600.1

Sequence Viewer

Length: 435 bp
ATGCCGAAAAAGCCCCTTTCACCTAACCCTTACATCCAAGCTGACCACGATTCAGCTTTCGCTACCAAGCCGCTACCAGTACCGTTCGATTTGCCCAAATCTCCGACCTCTGTCGCTCAGAACATTCCGGTGAAGGTTCTAAGTAATCCTGAAAAGACACCGATTCATACTTTCCTTTGCAACTATGATTTAAGTGACATGTCGGCTGGTACCAAATTATTGAATGGACTTCAAAAGCTTTCAATACAAGTAACTGCAATAACTTGGCTACACCAGAAATGTCATAGTGCCAATCACAAAACTGCACTAAGCAACACAAAGCAAAATGCACCAGGACCATTCCGGCGAACCACACGCCACCTCTCTACGGGGGACAAAGCTAGGCCTATTGTAACATTCACGGAAGAAAGAGATGGTGGACTTGAAGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromosome_seg DUF4210

Protein Analysis

144

Amino Acids

15.87

Weight (kDa)

9.36

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 1 cut(s) 71
AfaI GTAC 2 cut(s) 81, 211
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 4 cut(s) 223, 233, 243, 425
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 4 cut(s) 41, 56, 238, 380
AluI AGCT 4 cut(s) 41, 56, 238, 380
AoxI GGCC 1 cut(s) 383
Asp718I GGTACC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 12, 142
AvaII GGWCC 1 cut(s) 335
BanI GGYRCC 1 cut(s) 209
BccI CCATC 1 cut(s) 407
BciT130I CCWGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 381
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 333
BoxI GACNNNNGTC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 385
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 128, 343
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 427
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 77
BssMI GATC 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 117, 140, 308
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 430
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 202
BstPAI GACNNNNGTC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 331
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 80, 210
CviAII CATG 1 cut(s) 199
CviJI RGCY 9 cut(s) 13, 41, 56, 70, 206, 238, 268, 380, 385
CviKI_1 RGCY 9 cut(s) 13, 41, 56, 70, 206, 238, 268, 380, 385
CviQI GTAC 2 cut(s) 80, 210
DdeI CTNAG 3 cut(s) 117, 140, 308
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
Eco147I AGGCCT 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 168, 186, 200, 285
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 381
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 385
HapII CCGG 2 cut(s) 128, 343
Hin1II CATG 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 50, 163
HpaII CCGG 2 cut(s) 128, 343
HphI GGTGA 2 cut(s) 12, 142
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 105, 120
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 180, 257, 305, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 117, 140, 308
Hsp92II CATG 1 cut(s) 202
KpnI GGTACC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 427
LpnPI CCDG 8 cut(s) 90, 141, 162, 192, 287, 318, 345, 356
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 3 cut(s) 194, 250, 391
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 1 cut(s) 416
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 2 cut(s) 118, 371
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 2 cut(s) 128, 343
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 427
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 202
PceI AGGCCT 1 cut(s) 385
PciI ACATGT 1 cut(s) 198
PfeI GAWTC 2 cut(s) 50, 163
PkrI GCNGC 1 cut(s) 72
PscI ACATGT 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 335
RsaI GTAC 2 cut(s) 81, 211
RsaNI GTAC 2 cut(s) 80, 210
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 427
Sau96I GGNCC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 333
SetI ASST 8 cut(s) 25, 43, 58, 110, 138, 240, 363, 382
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 215
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 215
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 50, 163
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.