Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001700.1

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Forward (+)

100007 .. 100471

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001700.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaagccgaagaacagcaccacagcgaccaccggcgagtcccgattcctaggaacaatctccgcttcatcgattcgaaaccttcaccccagatcaatctcaaccaagcacggaaaatccttcttcagccgcaaaatcgccccaccaaatgccgaaacccctccacctaaccctaacatccaagccggcgacgattcggctttcgctaccaagcctctaccagtaaagttcgatttgcttaaatctccgacctccgccactcagaacattcgggtgaagagtgagattgatggatctgaaaatcctaggaacatgtggaaacctgcttctgtgatatggattgagatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

116

Amino Acids

12.66

Weight (kDa)

10.16

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	3 cut(s)	63, 130, 255
AclWI	GGATC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	312
AlwI	GGATC	1 cut(s)	301
AspA2I	CCTAGG	2 cut(s)	49, 305
AsuHPI	GGTGA	2 cut(s)	77, 286
AsuII	TTCGAA	1 cut(s)	76
AvrII	CCTAGG	2 cut(s)	49, 305
BccI	CCATC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	50, 306
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	130
BlnI	CCTAGG	2 cut(s)	49, 305
BlsI	GCNGC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	49, 305
Bse118I	RCCGGY	2 cut(s)	32, 185
Bse1I	ACTGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	49, 305
BseGI	GGATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	33, 186
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	92, 293
BspACI	CCGC	3 cut(s)	63, 130, 255
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	76
BsrFI	RCCGGY	2 cut(s)	32, 185
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	2 cut(s)	32, 185
BssECI	CCNNGG	2 cut(s)	49, 305
BssMI	GATC	2 cut(s)	92, 293
BssT1I	CCWWGG	2 cut(s)	49, 305
Bst6I	CTCTTC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	95, 296
BstMBI	GATC	2 cut(s)	92, 293
BstNSI	RCATGY	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	32, 185
ClaI	ATCGAT	1 cut(s)	71
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	5 cut(s)	7, 129, 185, 200, 214
CviKI_1	RGCY	5 cut(s)	7, 129, 185, 200, 214
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	94, 295
DpnII	GATC	2 cut(s)	92, 293
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	49, 305
Eco57I	CTGAAG	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	49, 305
ErhI	CCWWGG	2 cut(s)	49, 305
FaeI	CATG	1 cut(s)	316
FaiI	YATR	2 cut(s)	314, 337
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	2 cut(s)	50, 306
GluI	GCNGC	1 cut(s)	130
HapII	CCGG	2 cut(s)	33, 186
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	4 cut(s)	38, 45, 73, 194
HpaII	CCGG	2 cut(s)	33, 186
HphI	GGTGA	2 cut(s)	77, 286
Hpy188I	TCNGA	3 cut(s)	249, 264, 298
Hpy188III	TCNNGA	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	92, 130
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	92, 293
LpnPI	CCDG	5 cut(s)	46, 103, 199, 234, 336
MaeI	CTAG	2 cut(s)	50, 306
MalI	GATC	2 cut(s)	94, 295
MboI	GATC	2 cut(s)	92, 293
MboII	GAAGA	3 cut(s)	22, 115, 289
MflI	RGATCY	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	171, 225, 262
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	2 cut(s)	240, 349
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	2 cut(s)	33, 186
NaeI	GCCGGC	1 cut(s)	187
NdeII	GATC	2 cut(s)	92, 293
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	316
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	45, 73, 194
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	240, 349
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	2 cut(s)	92, 293
SchI	GAGTC	1 cut(s)	47
SetI	ASST	4 cut(s)	84, 169, 254, 325
SfuI	TTCGAA	1 cut(s)	76
SgrAI	CRCCGGYG	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	272
SsiI	CCGC	3 cut(s)	63, 130, 255
SspMI	CTAG	2 cut(s)	50, 306
StyI	CCWWGG	2 cut(s)	49, 305
TaqI	TCGA	3 cut(s)	71, 76, 231
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	45, 73, 194
Tru1I	TTAA	2 cut(s)	240, 349
Tru9I	TTAA	2 cut(s)	240, 349
TspDTI	ATGAA	2 cut(s)	17, 57
TspGWI	ACGGA	1 cut(s)	126
XceI	RCATGY	1 cut(s)	316
XmaJI	CCTAGG	2 cut(s)	49, 305
XspI	CTAG	2 cut(s)	50, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.