RLG00000028879

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
29666017 .. 29670219
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028879

Sequence Viewer

Length: 399 bp
ATGATCTTTTCAGGCTATCATCCATTATCAGGTCAATCTACTTTCTCTACTCTCCCACTTCACTCCTGCAATCTTGTTATTCCATTCAACGTTGGACCTCAGCGGAAGTCAAAGGTTGTGGACTGTTTGGTACAGTTTTTCATGATCGATCTCTGTCGAGTTGTTGGGTTGTGCGAGTTGATTGAAGAGCTTATGAGGTTGAAATTTGCAAATCTCACTATTGATATTGAGGATAACCTACAAATGGAAATGAAGTGCACAAAGCAGGTCAAATTACTGGAACTTCCTCAGACTATATCAATGCAGGCTAACAAGGGAAGCACCAGACTTCTAGGCAAAGCACATTTAAAGAATTTCACAAGAGCCGACGATTTTGGACGCAAATATATAAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.05

Weight (kDa)

8.88

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AciI CCGC 1 cut(s) 103
AclI AACGTT 1 cut(s) 90
AcsI RAATTY 2 cut(s) 203, 352
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 29, 244
AgsI TTSAA 3 cut(s) 88, 185, 202
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 260
Alw44I GTGCAC 1 cut(s) 256
ApaLI GTGCAC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 203, 352
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 99
BfaI CTAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 244
Bse1I ACTGG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 147
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 29, 244
BseMII CTCAG 2 cut(s) 113, 302
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 29, 244
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 3 cut(s) 3, 144, 148
BspACI CCGC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 112, 301
BspDI ATCGAT 1 cut(s) 147
BspHI TCATGA 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 282
BssMI GATC 3 cut(s) 3, 144, 148
Bst4CI ACNGT 2 cut(s) 125, 135
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 99, 288
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 3 cut(s) 6, 147, 151
BstMBI GATC 3 cut(s) 3, 144, 148
BstSLI GKGCMC 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 306
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 147
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 1 cut(s) 142
CviJI RGCY 4 cut(s) 15, 190, 308, 365
CviKI_1 RGCY 4 cut(s) 15, 190, 308, 365
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 99, 288
DpnI GATC 3 cut(s) 5, 146, 150
DpnII GATC 3 cut(s) 3, 144, 148
DraI TTTAAA 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 95
FaeI CATG 1 cut(s) 145
FaiI YATR 5 cut(s) 143, 194, 296, 387, 389
FatI CATG 1 cut(s) 141
FokI GGATG 1 cut(s) 6
FspBI CTAG 1 cut(s) 332
HgaI GACGC 1 cut(s) 387
Hin1II CATG 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 121, 258
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 2 cut(s) 121, 258
Hpy99I CGWCG 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 125, 135
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 4 cut(s) 69, 209, 258, 304
HpyF3I CTNAG 2 cut(s) 99, 288
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 145
Kzo9I GATC 3 cut(s) 3, 144, 148
LguI GCTCTTC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 15, 79, 251, 263, 290, 337
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 5, 146, 150
MboI GATC 3 cut(s) 3, 144, 148
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 3 cut(s) 203, 272, 352
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 108, 189, 223, 297
MseI TTAA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 103
NdeII GATC 3 cut(s) 3, 144, 148
NlaIII CATG 1 cut(s) 145
PagI TCATGA 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 90
PspPI GGNCC 1 cut(s) 95
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 347
Sau3AI GATC 3 cut(s) 3, 144, 148
Sau96I GGNCC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 260
SetI ASST 8 cut(s) 34, 93, 100, 117, 192, 200, 240, 270
SinI GGWCC 1 cut(s) 95
Sse9I AATT 3 cut(s) 203, 272, 352
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 125, 135
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 147, 157
TasI AATT 3 cut(s) 203, 272, 352
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 130, 266
VneI GTGCAC 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 2 cut(s) 203, 352
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.