Rh3AG079500

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001197
Physical Location & Seq
Forward (+)
6354013 .. 6357272
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG079500.1

Sequence Viewer

Length: 1008 bp
ATGCCAATGAAGAATGTGAGAGAGGACACCAGAGATAGCCAGATCAGCGGCTTCTCTGAGTTCTCTAAACCACAATGCTCTGGTAAACTGATCAATCCCAATGAGCCCAATTCTGGGTTTCAGGGGAAAAGCATGTTTGACAGCTCTGATAGTGAGAGTTTCTATGAAAGGCTAGGCAAGTTGAATGAGTCACTTGGGTACAATCTTGTCTTTGATGTCAGACAAACCAAACTGAATCTGCATCTCTTTTACAAGGAAGTCACTCTCAGGGGAGGCTTTAATCAGGTGAACAAAGATAGGAGATGGGATGAGATTGCATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTATCCAGATATTCTTCTAAAGCTTTATGCACTCTTTCTGTTTCATTATGAACAGATTTACTTTTATAGGGGACCTGAGAAAGTGGCTTCAACGCCAGATCTCCCTATTGATATTGAGGATAGCCCCCGAATGGAAATGAAGTGCACCAATCATTCATCTCAAATGGTAACAAATGTTGAAGATGGGCCTGGAGAGAAGAAGATGCTCAAGGAGAGCTGTTCTCAATCAATGTCGACAGGTTCGGCGTCTGCGGAAAAACAATCAGCACCAGAAGCAGAACAGAAGCATATCCCCCAGCTGCACTCAGAGAAAGAAGAGATATGGACAAAAGATATGCACTCATCGGCAGAAAACCAACTAGCAGTACCCAAAGCAGCACAGGAGCAGACCCCCCAGCTGCACTTGAAGAAAAAAGAGATGAGGAAAAGAGGTTCAGCATCAGCTGAAAAACAGTTGGCTGTACCCAGGAAAAAAGGGATGAAGAAGCCAGGTGCTCGACAAGGGATACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGGGAGATTAAAAAAAATTCAATCTAATAAAGGCCAGAATCTCCGACAACTGGCCAATGATGCATGGAATCAGCTATCTGAGGCTGAGAAACAGGTACAATTCCCTCTACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

335

Amino Acids

38.2

Weight (kDa)

9.1

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 51 - 134 5.5e-11 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 584
AciI CCGC 2 cut(s) 48, 602
AcoI YGGCCR 1 cut(s) 945
AcsI RAATTY 1 cut(s) 909
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 4 cut(s) 200, 717, 813, 990
AfiI CCNNNNNNNGG 4 cut(s) 113, 114, 481, 943
AgsI TTSAA 6 cut(s) 184, 328, 441, 530, 757, 914
AjnI CCWGG 3 cut(s) 538, 815, 838
AloI GAACNNNNNNTCC 2 cut(s) 766, 798
AluBI AGCT 7 cut(s) 144, 373, 567, 649, 748, 794, 967
AluI AGCT 7 cut(s) 144, 373, 567, 649, 748, 794, 967
Alw21I GWGCWC 2 cut(s) 497, 847
Alw44I GTGCAC 1 cut(s) 493
AoxI GGCC 3 cut(s) 536, 925, 945
ApaLI GTGCAC 1 cut(s) 493
ApeKI GCWGC 3 cut(s) 649, 725, 748
ApoI RAATTY 1 cut(s) 909
AspS9I GGNCC 2 cut(s) 422, 536
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 947
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 497, 847
BbvI GCAGC 3 cut(s) 636, 735, 737
BccI CCATC 3 cut(s) 297, 329, 527
BciT130I CCWGG 3 cut(s) 540, 817, 840
BciVI GTATCC 1 cut(s) 849
BclI TGATCA 1 cut(s) 90
BfaI CTAG 2 cut(s) 173, 710
BfuI GTATCC 1 cut(s) 849
BglII AGATCT 1 cut(s) 448
BisI GCNGC 4 cut(s) 49, 650, 726, 749
BlsI GCNGC 4 cut(s) 50, 651, 727, 750
Bme1390I CCNGG 3 cut(s) 540, 817, 840
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 422, 536
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 540, 817, 840
BmsI GCATC 5 cut(s) 250, 326, 543, 797, 943
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 815
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 114, 481, 943
Bse1I ACTGG 1 cut(s) 948
BseBI CCWGG 3 cut(s) 540, 817, 840
BseDI CCNNGG 1 cut(s) 815
BseGI GGATG 4 cut(s) 313, 317, 340, 834
BseLI CCNNNNNNNGG 4 cut(s) 113, 114, 481, 943
BseMII CTCAG 6 cut(s) 48, 280, 417, 669, 963, 969
BseNI ACTGG 1 cut(s) 948
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 3 cut(s) 636, 735, 737
BseYI CCCAGC 2 cut(s) 645, 744
BsgI GTGCAG 2 cut(s) 635, 734
BshFI GGCC 3 cut(s) 538, 927, 947
BsiHKAI GWGCWC 2 cut(s) 497, 847
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 4 cut(s) 113, 114, 481, 943
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 3 cut(s) 538, 927, 947
Bsp1286I GDGCHC 3 cut(s) 108, 497, 847
Bsp143I GATC 3 cut(s) 42, 90, 448
BspACI CCGC 2 cut(s) 48, 602
BspANI GGCC 3 cut(s) 538, 927, 947
BspCNI CTCAG 6 cut(s) 49, 279, 418, 668, 964, 970
BspLI GGNNCC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 948
BssECI CCNNGG 1 cut(s) 815
BssMI GATC 3 cut(s) 42, 90, 448
BssNI GRCGYC 1 cut(s) 596
Bst2UI CCWGG 3 cut(s) 540, 817, 840
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 596
BstDEI CTNAG 6 cut(s) 57, 266, 426, 655, 972, 978
BstEII GGTNACC 1 cut(s) 866
BstF5I GGATG 4 cut(s) 313, 317, 340, 834
BstKTI GATC 3 cut(s) 45, 93, 451
BstMBI GATC 3 cut(s) 42, 90, 448
BstMWI GCNNNNNNNGC 3 cut(s) 45, 623, 953
BstNI CCWGG 3 cut(s) 540, 817, 840
BstNSI RCATGY 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 538, 815, 838
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 3 cut(s) 636, 735, 737
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 3 cut(s) 538, 927, 947
BtsCI GGATG 4 cut(s) 313, 317, 340, 834
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 422, 536
CseI GACGC 1 cut(s) 585
Csp6I GTAC 4 cut(s) 199, 716, 812, 989
CviAII CATG 2 cut(s) 133, 957
CviQI GTAC 4 cut(s) 199, 716, 812, 989
DdeI CTNAG 6 cut(s) 57, 266, 426, 655, 972, 978
DpnI GATC 3 cut(s) 44, 92, 450
DpnII GATC 3 cut(s) 42, 90, 448
EaeI YGGCCR 1 cut(s) 945
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 866
EcoRII CCWGG 3 cut(s) 538, 815, 838
EcoT22I ATGCAT 1 cut(s) 958
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 2 cut(s) 136, 960
FaiI YATR 9 cut(s) 134, 165, 378, 399, 417, 639, 673, 686, 958
FaqI GGGAC 1 cut(s) 435
FatI CATG 2 cut(s) 132, 956
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 4 cut(s) 49, 650, 726, 749
FokI GGATG 4 cut(s) 304, 320, 347, 841
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 4 cut(s) 49, 650, 726, 749
FspBI CTAG 2 cut(s) 173, 710
GluI GCNGC 4 cut(s) 49, 650, 726, 749
GsaI CCCAGC 2 cut(s) 649, 748
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 538, 927, 947
HgaI GACGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 2 cut(s) 136, 960
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 5 cut(s) 188, 235, 343, 931, 961
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 4 cut(s) 86, 289, 495, 585
Hpy188I TCNGA 6 cut(s) 58, 148, 221, 658, 938, 973
Hpy188III TCNNGA 2 cut(s) 356, 883
Hpy8I GTNNAC 4 cut(s) 86, 289, 495, 585
HpyCH4III ACNGT 1 cut(s) 804
HpyCH4V TGCA 8 cut(s) 241, 317, 380, 495, 652, 688, 751, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 623, 953
HpyF3I CTNAG 6 cut(s) 57, 266, 426, 655, 972, 978
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 2 cut(s) 136, 960
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 3 cut(s) 42, 90, 448
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 3 cut(s) 636, 735, 737
LweI GCATC 5 cut(s) 250, 326, 543, 797, 943
MaeI CTAG 2 cut(s) 173, 710
MaeIII GTNAC 4 cut(s) 189, 259, 517, 866
MalI GATC 3 cut(s) 44, 92, 450
MboI GATC 3 cut(s) 42, 90, 448
MboII GAAGA 8 cut(s) 22, 356, 542, 559, 562, 677, 769, 844
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 108, 497, 847
MlsI TGGCCA 1 cut(s) 947
MluCI AATT 5 cut(s) 109, 329, 349, 909, 992
MluNI TGGCCA 1 cut(s) 947
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 961
MnlI CCTC 9 cut(s) 16, 266, 331, 333, 460, 765, 773, 967, 1008
Mox20I TGGCCA 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 958
MscI TGGCCA 1 cut(s) 947
MseI TTAA 3 cut(s) 279, 902, 1006
Msp20I TGGCCA 1 cut(s) 947
MspA1I CMGCKG 4 cut(s) 48, 649, 748, 794
MspR9I CCNGG 3 cut(s) 540, 817, 840
MvaI CCWGG 3 cut(s) 540, 817, 840
MwoI GCNNNNNNNGC 3 cut(s) 45, 623, 953
NdeII GATC 3 cut(s) 42, 90, 448
NlaIII CATG 2 cut(s) 136, 960
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 2 cut(s) 189, 259
NsiI ATGCAT 1 cut(s) 958
NspI RCATGY 1 cut(s) 136
PfeI GAWTC 4 cut(s) 235, 343, 931, 961
PkrI GCNGC 4 cut(s) 50, 651, 727, 750
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 3 cut(s) 538, 815, 838
PspEI GGTNACC 1 cut(s) 866
PspFI CCCAGC 2 cut(s) 645, 744
PspGI CCWGG 3 cut(s) 538, 815, 838
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 422, 536
PspPPI RGGWCCY 1 cut(s) 422
PsuI RGATCY 1 cut(s) 448
PvuII CAGCTG 3 cut(s) 649, 748, 794
RsaI GTAC 4 cut(s) 200, 717, 813, 990
RsaNI GTAC 4 cut(s) 199, 716, 812, 989
SalI GTCGAC 1 cut(s) 583
SaqAI TTAA 3 cut(s) 279, 902, 1006
SatI GCNGC 4 cut(s) 49, 650, 726, 749
Sau3AI GATC 3 cut(s) 42, 90, 448
Sau96I GGNCC 2 cut(s) 422, 536
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 540, 817, 840
SduI GDGCHC 3 cut(s) 108, 497, 847
SfaNI GCATC 5 cut(s) 250, 326, 543, 797, 943
SinI GGWCC 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 5 cut(s) 109, 329, 349, 909, 992
SsiI CCGC 2 cut(s) 48, 602
SspMI CTAG 2 cut(s) 173, 710
StyD4I CCNGG 3 cut(s) 538, 815, 838
TaaI ACNGT 1 cut(s) 804
TaqI TCGA 2 cut(s) 584, 847
TasI AATT 5 cut(s) 109, 329, 349, 909, 992
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 4 cut(s) 235, 343, 931, 961
Tru1I TTAA 3 cut(s) 279, 902, 1006
Tru9I TTAA 3 cut(s) 279, 902, 1006
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 2 cut(s) 189, 259
TseI GCWGC 3 cut(s) 649, 725, 748
Tsp45I GTSAC 2 cut(s) 189, 259
TspDTI ATGAA 7 cut(s) 23, 180, 383, 414, 495, 503, 845
TspRI CASTG 1 cut(s) 868
VneI GTGCAC 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 909
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 2 cut(s) 173, 710
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.