Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

27957058 .. 27960070

Gene Structure 3013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G312100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAGACTACTGAGAACCAGCCAGAGACTGAGAAAAATGGCTCTCAATGCCTTGTTACTATGAATTCCAATGTGACACTTTCTGAGCCTGATGATGGGAAAAGCTTGCTGGAGTTGGAGAACTCTGAGATTGAGAGTTTCTATCAGAGACTCAACAAGTTGCACAACTCATCTGGGCTGAACCTTCTAAAAGCAAAGTCAGAATCTTTGAAAAAGACGAGAAAAGTTGGAATCTTTGCTTACAAGAAGCAAAGTTGGAACCTTTGCTCACTCACAAGTCGGAACGTTCTAATTCAGAAATCAGTAGTGCCATTGAATATGTTGGGCATAAAACTTCAGATAACTCTTGTTACATTCATATTTGGCTTGATTATGCCACTTAATTTTGATCTCAGACAAACAACACTTGACTTGCATCTGTTTTACAAAGAAGTCATTGAAAGAGGAGGATTTATTCAGGTTACCGCAGATGGGAGGTGGGGTGAAGTTGCACTGGCCCTAAAATTAGATGGGGAGAATCTGCAGGATCCTCAACCTCTTTTAAAACTCTATGCACTCTTTCTCTACCAGTATGAACAGCTTTACTATTACAGGGAACGTCGTGTGAAAGCTGCTTCGACTCTAGGTCATGCTTTCTACAATATTGGAGATAGCTCAGCAATGGAAGGGAACTGTAGGGACAACTCATCTCCGATACCCAATCTTGAAGATGCTCATGTGGAGAAGAAGAAGGTGCCCAAAGAGAATTATCAACTAACATTGATGGGTTCTACATCTGCCGAACAAAAGCAGTTCCCCCAGCTGCGCTCAAAGAACAAAGAGATGAAGAAACGTGTCGGTGCTCCACGAGGGGCACAAAGTGCATATCATATCTTCCTCAAGATAGAATGTGAGCGGTTGAAAAGTACTGATTCAGGGAAAGTGAAGGGTCAAAATGTCCGATACATGGTAGACAATGCATGGAGGTCCCTCTCTGCGAGTGAGAAACAGCCATACATTGAGGCAAGTAAGAAGGTAAGGGAAAGAAGAGTGGCTCAAGAAGTGGCTGCTGATGAGGAGAAAATATTGACTTGCCAGAAGAAGACCTCAGAGAATGGGTTGACTGGAGTCAATGATGTGGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box HMG_box_2

Protein Analysis

376

Amino Acids

42.59

Weight (kDa)

9.2

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	733
AccBSI	CCGCTC	1 cut(s)	895
AccI	GTMKAC	1 cut(s)	951
AciI	CCGC	2 cut(s)	465, 895
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	2 cut(s)	521, 534
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	1 cut(s)	907
AfiI	CCNNNNNNNGG	3 cut(s)	95, 471, 946
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	6 cut(s)	211, 316, 440, 707, 901, 1124
AhdI	GACNNNNNGTC	1 cut(s)	624
AluBI	AGCT	5 cut(s)	105, 580, 611, 654, 802
AluI	AGCT	5 cut(s)	105, 580, 611, 654, 802
Alw21I	GWGCWC	1 cut(s)	844
Alw26I	GTCTC	2 cut(s)	20, 142
AlwI	GGATC	2 cut(s)	521, 534
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	611, 802, 1046
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	496, 966
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	966
BaeGI	GKGCMC	2 cut(s)	738, 856
BamHI	GGATCC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	846
BbsI	GAAGAC	2 cut(s)	11, 1088
Bbv12I	GWGCWC	1 cut(s)	844
BbvI	GCAGC	3 cut(s)	598, 789, 1033
BccI	CCATC	4 cut(s)	89, 464, 503, 757
BcoDI	GTCTC	2 cut(s)	20, 142
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	2 cut(s)	521, 673
BisI	GCNGC	3 cut(s)	612, 803, 1047
BlpI	GCTNAGC	1 cut(s)	655
BlsI	GCNGC	3 cut(s)	613, 804, 1048
BmcAI	AGTACT	1 cut(s)	907
Bme18I	GGWCC	1 cut(s)	966
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmgT120I	GGNCC	2 cut(s)	496, 966
BmiI	GGNNCC	4 cut(s)	260, 528, 735, 968
BmsI	GCATC	2 cut(s)	424, 700
BoxI	GACNNNNGTC	1 cut(s)	1106
BpiI	GAAGAC	2 cut(s)	11, 1088
BpmI	CTGGAG	2 cut(s)	131, 1125
Bpu1102I	GCTNAGC	1 cut(s)	655
BpuEI	CTTGAG	2 cut(s)	863, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 471, 946
Bse1I	ACTGG	3 cut(s)	498, 568, 1108
Bse3DI	GCAATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	95, 471, 946
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	6 cut(s)	21, 75, 117, 406, 669, 1101
BseNI	ACTGG	3 cut(s)	498, 568, 1108
BseRI	GAGGAG	2 cut(s)	459, 1070
BseSI	GKGCMC	2 cut(s)	738, 856
BseXI	GCAGC	3 cut(s)	598, 789, 1033
BseYI	CCCAGC	1 cut(s)	798
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	844
BslFI	GGGAC	2 cut(s)	692, 952
BslI	CCNNNNNNNGG	3 cut(s)	95, 471, 946
BsmAI	GTCTC	2 cut(s)	20, 142
BsmFI	GGGAC	2 cut(s)	692, 952
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	738, 844, 856
Bsp143I	GATC	2 cut(s)	388, 526
Bsp1720I	GCTNAGC	1 cut(s)	655
BspACI	CCGC	2 cut(s)	465, 895
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	7 cut(s)	4, 22, 76, 118, 405, 668, 1100
BspLI	GGNNCC	4 cut(s)	260, 528, 735, 968
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	2 cut(s)	521, 534
BspT107I	GGYRCC	1 cut(s)	733
BsrBI	CCGCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	3 cut(s)	498, 568, 1108
BssMI	GATC	2 cut(s)	388, 526
BssSI	CACGAG	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	1 cut(s)	1021
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	7 cut(s)	12, 30, 84, 126, 392, 655, 1087
BstEII	GGTNACC	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	2 cut(s)	391, 529
BstMAI	GTCTC	2 cut(s)	20, 142
BstMBI	GATC	2 cut(s)	388, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 860
BstPAI	GACNNNNGTC	1 cut(s)	1106
BstPI	GGTNACC	1 cut(s)	460
BstSFI	CTRYAG	2 cut(s)	521, 673
BstSLI	GKGCMC	2 cut(s)	738, 856
BstV1I	GCAGC	3 cut(s)	598, 789, 1033
BstV2I	GAAGAC	2 cut(s)	11, 1088
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	807
Cfr13I	GGNCC	2 cut(s)	496, 966
Csp6I	GTAC	1 cut(s)	906
CviAII	CATG	4 cut(s)	629, 716, 946, 960
CviQI	GTAC	1 cut(s)	906
DdeI	CTNAG	7 cut(s)	12, 30, 84, 126, 392, 655, 1087
DpnI	GATC	2 cut(s)	390, 528
DpnII	GATC	2 cut(s)	388, 526
DraI	TTTAAA	1 cut(s)	543
DraIII	CACNNNGTG	1 cut(s)	860
DriI	GACNNNNNGTC	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	1021
Eam1105I	GACNNNNNGTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	1021
Eco47I	GGWCC	1 cut(s)	966
Eco57I	CTGAAG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	966
EcoO65I	GGTNACC	1 cut(s)	460
EcoRI	GAATTC	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	961
FaeI	CATG	4 cut(s)	632, 719, 949, 963
FaqI	GGGAC	2 cut(s)	692, 952
FatI	CATG	4 cut(s)	628, 715, 945, 959
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	3 cut(s)	612, 803, 1047
Fsp4HI	GCNGC	3 cut(s)	612, 803, 1047
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	3 cut(s)	612, 803, 1047
GsaI	CCCAGC	1 cut(s)	802
GsuI	CTGGAG	2 cut(s)	131, 1125
HaeIII	GGCC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	4 cut(s)	632, 719, 949, 963
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HincII	GTYRAC	1 cut(s)	1101
HindII	GTYRAC	1 cut(s)	1101
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	7 cut(s)	150, 203, 231, 517, 619, 911, 1107
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	952, 1101
Hpy188III	TCNNGA	3 cut(s)	704, 880, 1037
Hpy8I	GTNNAC	2 cut(s)	952, 1101
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	5 cut(s)	194, 659, 724, 919, 1006
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	3 cut(s)	285, 598, 832
HpyCH4V	TGCA	7 cut(s)	163, 415, 491, 523, 554, 863, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 860
HpyF3I	CTNAG	7 cut(s)	12, 30, 84, 126, 392, 655, 1087
HpySE526I	ACGT	3 cut(s)	285, 598, 832
Hsp92II	CATG	4 cut(s)	632, 719, 949, 963
HspAI	GCGC	1 cut(s)	805
Kzo9I	GATC	2 cut(s)	388, 526
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	3 cut(s)	598, 789, 1033
LweI	GCATC	2 cut(s)	424, 700
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	3 cut(s)	285, 598, 832
MaeIII	GTNAC	4 cut(s)	55, 73, 349, 460
MalI	GATC	2 cut(s)	390, 528
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	2 cut(s)	388, 526
MboII	GAAGA	9 cut(s)	16, 719, 736, 739, 838, 865, 1038, 1090, 1093
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	3 cut(s)	738, 844, 856
MluCI	AATT	5 cut(s)	64, 291, 382, 503, 745
MlyI	GAGTC	3 cut(s)	144, 613, 1116
MmeI	TCCRAC	4 cut(s)	96, 208, 236, 260
Mph1103I	ATGCAT	1 cut(s)	961
MseI	TTAA	2 cut(s)	381, 542
MspA1I	CMGCKG	1 cut(s)	802
MwoI	GCNNNNNNNGC	2 cut(s)	48, 860
NdeII	GATC	2 cut(s)	388, 526
NlaIII	CATG	4 cut(s)	632, 719, 949, 963
NlaIV	GGNNCC	4 cut(s)	260, 528, 735, 968
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	961
PfeI	GAWTC	4 cut(s)	203, 231, 517, 911
PkrI	GCNGC	3 cut(s)	613, 804, 1048
PleI	GAGTC	3 cut(s)	144, 613, 1115
PpsI	GAGTC	3 cut(s)	144, 613, 1115
PpuMI	RGGWCCY	1 cut(s)	966
PshAI	GACNNNNGTC	1 cut(s)	1106
Psp1406I	AACGTT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	966
PspEI	GGTNACC	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	798
PspN4I	GGNNCC	4 cut(s)	260, 528, 735, 968
PspPI	GGNCC	2 cut(s)	496, 966
PspPPI	RGGWCCY	1 cut(s)	966
PstI	CTGCAG	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	1 cut(s)	907
RsaNI	GTAC	1 cut(s)	906
SaqAI	TTAA	2 cut(s)	381, 542
SatI	GCNGC	3 cut(s)	612, 803, 1047
Sau3AI	GATC	2 cut(s)	388, 526
Sau96I	GGNCC	2 cut(s)	496, 966
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	3 cut(s)	144, 613, 1116
SduI	GDGCHC	3 cut(s)	738, 844, 856
SfaNI	GCATC	2 cut(s)	424, 700
SfcI	CTRYAG	2 cut(s)	521, 673
SinI	GGWCC	1 cut(s)	966
SmlI	CTYRAG	2 cut(s)	878, 1035
SmoI	CTYRAG	2 cut(s)	878, 1035
Sse9I	AATT	5 cut(s)	64, 291, 382, 503, 745
SsiI	CCGC	2 cut(s)	465, 895
SspI	AATATT	2 cut(s)	643, 1065
SspMI	CTAG	1 cut(s)	623
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	3 cut(s)	288, 601, 835
TaqI	TCGA	1 cut(s)	617
TasI	AATT	5 cut(s)	64, 291, 382, 503, 745
TatI	WGTACW	1 cut(s)	905
TfiI	GAWTC	4 cut(s)	203, 231, 517, 911
Tru1I	TTAA	2 cut(s)	381, 542
Tru9I	TTAA	2 cut(s)	381, 542
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	611, 802, 1046
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	17, 77, 346, 588, 839
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	966
XapI	RAATTY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	951
XspI	CTAG	1 cut(s)	623
ZrmI	AGTACT	1 cut(s)	907
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.