Rh4DG031800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001197
Physical Location & Seq
Reverse (-)
5343126 .. 5359336
16211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG031800.1

Sequence Viewer

Length: 426 bp
ATGCCGAAAAAGCCCCTTTCACCTAACCCTTACATCCAAGCTGACCACGATTCAGCTTTCGCTACCAAGCCGCTACCAGTACCGTTCGATTTGCCCAAATCTCCGACCTCTGCCGCTCAGAACATTCCGGTGAAGGTTTGTTCCGTACTTCATTCAGCCTGGATGTTGATGTTGCATGATGAAGATTTGAAAGGATTACTAATTCAAAGAACACAGTTTTTCATGATTGATCTCTGTCGAGTTGTTGGGTTGTGCGAGTTGTTTGAAGATCTCACTATTAATATTGAGGATAACCTACAAATGGAAATGAAGTGCACAAGCCATTCGTCTCAAATGATCAAAGTTTCAAACTTTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGAACACCTGTTATCCAGGTTGAGTGAGCAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.86

Weight (kDa)

5.23

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 116
AciI CCGC 2 cut(s) 71, 114
AfaI GTAC 2 cut(s) 81, 147
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 4 cut(s) 190, 206, 266, 348
AjnI CCWGG 2 cut(s) 158, 404
AluBI AGCT 3 cut(s) 41, 56, 389
AluI AGCT 3 cut(s) 41, 56, 389
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 333
Alw44I GTGCAC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 313
AseI ATTAAT 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 12, 142
BaeGI GKGCMC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 160, 406
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 333
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 71, 114
BlsI GCNGC 2 cut(s) 72, 115
Bme1390I CCNGG 2 cut(s) 160, 406
BmrFI CCNGG 2 cut(s) 160, 406
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 160, 406
BseGI GGATG 2 cut(s) 33, 168
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 1 cut(s) 333
BsmBI CGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 229, 268, 336
BspACI CCGC 2 cut(s) 71, 114
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 77
BssMI GATC 3 cut(s) 229, 268, 336
Bst2UI CCWGG 2 cut(s) 160, 406
Bst4CI ACNGT 2 cut(s) 84, 216
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 33, 168
BstKTI GATC 3 cut(s) 232, 271, 339
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 229, 268, 336
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 160, 406
BstSCI CCNGG 2 cut(s) 158, 404
BstSLI GKGCMC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 2 cut(s) 33, 168
CciI TCATGA 1 cut(s) 222
Csp6I GTAC 2 cut(s) 80, 146
CviAII CATG 2 cut(s) 176, 223
CviJI RGCY 7 cut(s) 13, 41, 56, 70, 158, 321, 389
CviKI_1 RGCY 7 cut(s) 13, 41, 56, 70, 158, 321, 389
CviQI GTAC 2 cut(s) 80, 146
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 231, 270, 338
DpnII GATC 3 cut(s) 229, 268, 336
EcoRII CCWGG 2 cut(s) 158, 404
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 179, 226
FaiI YATR 3 cut(s) 177, 224, 374
FatI CATG 2 cut(s) 175, 222
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 71, 114
FokI GGATG 2 cut(s) 20, 175
Fsp4HI GCNGC 2 cut(s) 71, 114
GluI GCNGC 2 cut(s) 71, 114
HapII CCGG 1 cut(s) 128
Hin1II CATG 2 cut(s) 179, 226
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 12, 142
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 2 cut(s) 105, 120
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 84, 216
HpyCH4V TGCA 4 cut(s) 175, 315, 356, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 2 cut(s) 179, 226
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 3 cut(s) 229, 268, 336
LpnPI CCDG 8 cut(s) 90, 141, 145, 172, 391, 404, 410, 418
MalI GATC 3 cut(s) 231, 270, 338
MbiI CCGCTC 1 cut(s) 116
MboI GATC 3 cut(s) 229, 268, 336
MboII GAAGA 2 cut(s) 194, 278
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 128, 363
MnlI CCTC 2 cut(s) 118, 280
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 160, 406
MvaI CCWGG 2 cut(s) 160, 406
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 3 cut(s) 229, 268, 336
NlaIII CATG 2 cut(s) 179, 226
PagI TCATGA 1 cut(s) 222
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 72, 115
PshBI ATTAAT 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 158, 404
PspGI CCWGG 2 cut(s) 158, 404
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 81, 147
RsaNI GTAC 2 cut(s) 80, 146
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 2 cut(s) 71, 114
Sau3AI GATC 3 cut(s) 229, 268, 336
ScrFI CCNGG 2 cut(s) 160, 406
SduI GDGCHC 1 cut(s) 317
SetI ASST 9 cut(s) 25, 43, 58, 110, 138, 297, 391, 399, 410
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 71, 114
SspI AATATT 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 158, 404
TaaI ACNGT 2 cut(s) 84, 216
TaqI TCGA 2 cut(s) 87, 238
TasI AATT 1 cut(s) 201
TauI GCSGC 2 cut(s) 73, 116
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TspDTI ATGAA 4 cut(s) 140, 195, 211, 323
TspGWI ACGGA 2 cut(s) 133, 392
VneI GTGCAC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.