FvH4_6g07670

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015201
Physical Location & Seq
Reverse (-)
4627126 .. 4628145
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07670.t1

Sequence Viewer

Length: 1020 bp
ATGCCTACCGAAAACAAAGGCTCTCTCCCCTTGTTGGTCATAAACTACCTCCTCCTGTTCGTCGGATCAGTTTCCTCCTCCCTTCTCTCAAAATATTATTTCGTTCACGGATGCTCGAATTTATGGGTTTCTACATGGGTCCAATCTGCTGGGTTTCCTCTTCTTCTTCCCCCAATTATCCTCCCTTATTTCCTAAACCGCACCACTAGAAGACCCTTCACTCACTTCACCGCCAAAATCTTCTTCATATCCATCTTTGTGGGACTGATGTTGGGCCTCAACAATCTCCTTTTCTCGGTAGGCAACTCCAACCTCCCGGTCTCCACCTTCTCCCTCATCCTCTCTTCACATCTTGTATTCAATCTCGTCCTCTCTGTCATAATCGTTAAACAAAAGGTTACATTTTCTAACCTCAACTGCGTAATCCTCCTTACCTTCAGCACCATTCTAATAGCCCTAGACTCGAGCCCCGACAAGCATGGACTGACACATGACAAGTACTTGATGGGATTCTTGTCCACCGTCGGCGCCGGCTTGCTGTTTGCTCTCTACCTCCCCGTCATGGAAAAAGTCTACAGAAAAGTTAACTGCTACTCCATGATGATGGAAATGCAGGTGGTAATGGAGGCGGCGTCGACGGCGCTGTCGACGGCGTTCATGGTGTATACGGGTGGGTTTGGTGGGATGGTGAGGGAGGGCAGGGAGGTGTTTGACAAGGGAGAGAGCCTGTATTGGTGGACGGTGGTGTTTAACATCGTGACGTGGCAGCTGTGCTTTATGGGGACGGCGGGGACGGTTTTCTTGACGACGTCGCTGACAGGCGGGATATGCATGACGGCGTTGACGGGGATGAACGTGTTGGGGGGAGTGGTGGTTTACGGGGACAAGTTTGGTGGGGTGAAAGTGGTCTCGACTCTGCTCTGTGTATGGGGTTTTTGTTCGTATGTGTACGGGATTTACATCAAGTCGAAGAAAGACGAGGACGAGGACGAGGACCGCACTGATGATGAGATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

340

Amino Acids

37.58

Weight (kDa)

6.94

Isoelectric Point (pI)

22.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 11 - 325 4.4e-91 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30840 AT1G30840
fragaria_vesca FvH4_3g13350 FvH4_6g07670
malus_domestica MD05G1242500.v1.1 MD10G1224300.v1.1
prunus_persica Prupe.4G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0022031
rosa_laevigata RLG00000032639
rosa_multiflora Rmu_sc0001585.1_g000011
rosa_rugosa Rorug05G0070800
rosa_samantha Rh5AG158700 Rh5BG158000 Rh5CG172500 Rh5DG158200
rosa_wichuraiana Rw5G014140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
AasI GACNNNNNNGTC 1 cut(s) 643
AatII GACGTC 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 527
AccI GTMKAC 4 cut(s) 573, 635, 647, 665
AciI CCGC 6 cut(s) 199, 231, 629, 788, 822, 997
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 421
AcyI GRCGYC 3 cut(s) 528, 632, 809
AfaI GTAC 2 cut(s) 500, 950
AfiI CCNNNNNNNGG 3 cut(s) 34, 295, 562
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 1 cut(s) 361
AjiI CACGTC 1 cut(s) 762
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 1 cut(s) 769
AluI AGCT 1 cut(s) 769
Alw26I GTCTC 2 cut(s) 325, 913
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 2 cut(s) 530, 643
AspS9I GGNCC 3 cut(s) 139, 274, 994
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 220, 700, 910
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 2 cut(s) 139, 994
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 778
BccI CCATC 4 cut(s) 260, 499, 598, 679
BceAI ACGGC 4 cut(s) 654, 666, 801, 852
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 325, 913
BfaI CTAG 2 cut(s) 207, 458
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 2 cut(s) 531, 644
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 2 cut(s) 630, 767
BlsI GCNGC 2 cut(s) 631, 768
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 2 cut(s) 139, 994
BmeT110I CYCGRG 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 3 cut(s) 139, 274, 994
BmiI GGNNCC 2 cut(s) 140, 529
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 959
BsaHI GRCGYC 3 cut(s) 528, 632, 809
BsaI GGTCTC 2 cut(s) 325, 913
BsaXI ACNNNNNCTCC 6 cut(s) 578, 608, 617, 647, 858, 888
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 295, 562
Bse118I RCCGGY 1 cut(s) 530
Bse8I GATNNNNATC 1 cut(s) 959
BseGI GGATG 4 cut(s) 116, 336, 690, 855
BseJI GATNNNNATC 1 cut(s) 959
BseLI CCNNNNNNNGG 3 cut(s) 34, 295, 562
BseRI GAGGAG 2 cut(s) 41, 67
BseXI GCAGC 1 cut(s) 778
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 527
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 2 cut(s) 317, 531
BslFI GGGAC 4 cut(s) 276, 796, 805, 896
BslI CCNNNNNNNGG 3 cut(s) 34, 295, 562
BsmAI GTCTC 2 cut(s) 325, 913
BsmFI GGGAC 4 cut(s) 276, 796, 805, 896
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 2 cut(s) 325, 913
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 6 cut(s) 199, 231, 629, 788, 822, 997
BspANI GGCC 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 140, 529
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 527
BspTNI GGTCTC 2 cut(s) 325, 913
BsrFI RCCGGY 1 cut(s) 530
BssAI RCCGGY 1 cut(s) 530
BssMI GATC 1 cut(s) 65
BssNAI GTATAC 1 cut(s) 666
BssNI GRCGYC 3 cut(s) 528, 632, 809
Bst1107I GTATAC 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 523, 742, 796
Bst6I CTCTTC 2 cut(s) 165, 349
BstACI GRCGYC 3 cut(s) 528, 632, 809
BstC8I GCNNGC 2 cut(s) 532, 536
BstF5I GGATG 4 cut(s) 116, 336, 690, 855
BstH2I RGCGCY 2 cut(s) 531, 644
BstHHI GCGC 2 cut(s) 530, 643
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 2 cut(s) 325, 913
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 638, 828
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 574
BstV1I GCAGC 1 cut(s) 778
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 3 cut(s) 149, 259, 604
BstZ17I GTATAC 1 cut(s) 666
BsuRI GGCC 1 cut(s) 276
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 4 cut(s) 116, 336, 690, 855
BtsIMutI CAGTG 1 cut(s) 999
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 2 cut(s) 532, 536
CfoI GCGC 2 cut(s) 530, 643
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 139, 274, 994
CseI GACGC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 499, 949
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 7 cut(s) 135, 479, 491, 562, 598, 658, 832
CviJI RGCY 7 cut(s) 21, 276, 455, 468, 534, 726, 769
CviKI_1 RGCY 7 cut(s) 21, 276, 455, 468, 534, 726, 769
CviQI GTAC 2 cut(s) 499, 949
DinI GGCGCC 1 cut(s) 529
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DrdI GACNNNNNNGTC 1 cut(s) 643
DseDI GACNNNNNNGTC 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 165, 349
EarI CTCTTC 2 cut(s) 165, 349
Eco24I GRGCYC 1 cut(s) 470
Eco31I GGTCTC 2 cut(s) 325, 913
Eco47I GGWCC 2 cut(s) 139, 994
Eco57I CTGAAG 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 833
EcoT38I GRGCYC 1 cut(s) 470
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
FaeI CATG 7 cut(s) 138, 482, 494, 565, 601, 661, 835
FaqI GGGAC 4 cut(s) 276, 796, 805, 896
FatI CATG 7 cut(s) 134, 478, 490, 561, 597, 657, 831
FauI CCCGC 2 cut(s) 781, 815
FblI GTMKAC 4 cut(s) 573, 635, 647, 665
Fnu4HI GCNGC 2 cut(s) 630, 767
FokI GGATG 4 cut(s) 123, 323, 697, 862
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 630, 767
FspBI CTAG 2 cut(s) 207, 458
GlaI GCGC 2 cut(s) 529, 642
GluI GCNGC 2 cut(s) 630, 767
GsaI CCCAGC 1 cut(s) 153
HaeII RGCGCY 2 cut(s) 531, 644
HaeIII GGCC 1 cut(s) 276
HapII CCGG 2 cut(s) 317, 531
HgaI GACGC 1 cut(s) 621
HhaI GCGC 2 cut(s) 530, 643
Hin1I GRCGYC 3 cut(s) 528, 632, 809
Hin1II CATG 7 cut(s) 138, 482, 494, 565, 601, 661, 835
Hin6I GCGC 2 cut(s) 528, 641
HinP1I GCGC 2 cut(s) 528, 641
HincII GTYRAC 4 cut(s) 586, 636, 648, 843
HindII GTYRAC 4 cut(s) 586, 636, 648, 843
HinfI GANTC 3 cut(s) 461, 510, 913
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 2 cut(s) 317, 531
HphI GGTGA 3 cut(s) 220, 700, 910
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 3 cut(s) 757, 802, 910
Hpy99I CGWCG 7 cut(s) 65, 527, 637, 640, 652, 811, 814
HpyAV CCTTC 4 cut(s) 92, 226, 337, 445
HpyCH4III ACNGT 3 cut(s) 523, 742, 796
HpyCH4IV ACGT 3 cut(s) 761, 809, 855
HpyCH4V TGCA 2 cut(s) 613, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 638, 828
HpySE526I ACGT 3 cut(s) 761, 809, 855
Hsp92I GRCGYC 3 cut(s) 528, 632, 809
Hsp92II CATG 7 cut(s) 138, 482, 494, 565, 601, 661, 835
HspAI GCGC 2 cut(s) 528, 641
KasI GGCGCC 1 cut(s) 527
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 68, 135, 330, 544, 599, 685, 740, 804
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 207, 458
MaeII ACGT 3 cut(s) 761, 809, 855
MaeIII GTNAC 2 cut(s) 397, 757
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 8 cut(s) 152, 155, 158, 222, 232, 235, 336, 982
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 2 cut(s) 118, 174
Mly113I GGCGCC 1 cut(s) 528
MlyI GAGTC 2 cut(s) 455, 907
MmeI TCCRAC 2 cut(s) 43, 333
Mph1103I ATGCAT 1 cut(s) 833
MroNI GCCGGC 1 cut(s) 530
MseI TTAA 3 cut(s) 387, 585, 750
MslI CAYNNNNRTG 2 cut(s) 257, 602
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 2 cut(s) 317, 531
MspR9I CCNGG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 638, 828
NaeI GCCGGC 1 cut(s) 532
NarI GGCGCC 1 cut(s) 528
NciI CCSGG 1 cut(s) 317
NdeII GATC 1 cut(s) 65
NgoMIV GCCGGC 1 cut(s) 530
NlaIII CATG 7 cut(s) 138, 482, 494, 565, 601, 661, 835
NlaIV GGNNCC 2 cut(s) 140, 529
NmuCI GTSAC 1 cut(s) 757
NsiI ATGCAT 1 cut(s) 833
PaeR7I CTCGAG 1 cut(s) 463
PaqCI CACCTGC 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PdiI GCCGGC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 510
PflFI GACNNNGTC 1 cut(s) 808
PkrI GCNGC 2 cut(s) 631, 768
PleI GAGTC 2 cut(s) 455, 907
PluTI GGCGCC 1 cut(s) 531
PpsI GAGTC 2 cut(s) 455, 907
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 140, 529
PspPI GGNCC 3 cut(s) 139, 274, 994
PspXI VCTCGAGB 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 2 cut(s) 500, 950
RsaNI GTAC 2 cut(s) 499, 949
RseI CAYNNNNRTG 2 cut(s) 257, 602
SalI GTCGAC 2 cut(s) 634, 646
SaqAI TTAA 3 cut(s) 387, 585, 750
SatI GCNGC 2 cut(s) 630, 767
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 3 cut(s) 139, 274, 994
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 2 cut(s) 455, 907
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 574
SfoI GGCGCC 1 cut(s) 529
Sfr274I CTCGAG 1 cut(s) 463
SgrDI CGTCGACG 1 cut(s) 634
SinI GGWCC 2 cut(s) 139, 994
SlaI CTCGAG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 257, 602
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 2 cut(s) 118, 174
SsiI CCGC 6 cut(s) 199, 231, 629, 788, 822, 997
SspDI GGCGCC 1 cut(s) 527
SspI AATATT 1 cut(s) 95
SspMI CTAG 2 cut(s) 207, 458
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 523, 742, 796
TaiI ACGT 3 cut(s) 764, 812, 858
TaqI TCGA 6 cut(s) 116, 464, 635, 647, 911, 968
TasI AATT 2 cut(s) 118, 174
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 3 cut(s) 387, 585, 750
Tru9I TTAA 3 cut(s) 387, 585, 750
TscAI CASTG 1 cut(s) 1006
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 3 cut(s) 235, 646, 866
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 1006
Tth111I GACNNNGTC 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 139, 994
XapI RAATTY 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 463
XmiI GTMKAC 4 cut(s) 573, 635, 647, 665
XspI CTAG 2 cut(s) 207, 458
ZraI GACGTC 1 cut(s) 810
ZrmI AGTACT 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.