Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001585.1

Orthogroup ID

OG0015201

Physical Location & Seq

Genomic Coordinates Reverse (-)

43228 .. 44256

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001585.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgaactacctcctcctctttgttggctccgtctcagccactctcctctccaaatactatttcattcataaaggctcaagcatttgggtcgctacatgggttcagtgtgctggctttcctcttcttctccccccaattatcctcccttatttcctcaacctcaccaccagaagacccttcactcaattcacctccaaaatcttcttcatctccattttcgtgggccttatgttgggcctcaacaacctcctcttctccgtcggcaattccaacctccccgtctccacctcttccctccttctctcctcccaactcgtcttcaacctcctcctctccgtactcatcgtcaaacagaaggtcacattctccaaccttaactgcgtcatcctcctaaccgtcagctccatcctcttagcccttggctcgagccacgacaagcctcccggtctgacacgtggaaagtacttcgtcggattcttctccaccatcggtgccggcttgctcttcgctctctacctccccatcatggaaaaagtctacagaaaagtcgactgctactccatgatgatggaaatgcaggcggtgatggaggccgccgcgacggcgttgtcgacggccttgatggtgtggaacggtgcgtttggtggcatggtgagggaggggagggaggtgtttgacaagggagagagggtatattgggtgacggtggcgtttaacgtcgtgacgtggcagctgtgctttatggggacggcggggatggttttcttgacgacgtcgctgaccggcgggatatgcatgacggcgttgatggggatgaacgtattggggggagtggtggtttacggggacaagtttggtggggtgaaagcggtttcgactgtgctttgtgtatgggggttctgttcttatgtatacgggatttacatgaagtcgaagaagattagggaggacgacgacgacgaggaccgcaccgagatgatagagatgggtagaaatccgagtgtacgtaacggtgaaattcatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

342

Amino Acids

37.78

Weight (kDa)

8.88

Isoelectric Point (pI)

19.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30840 AT1G30840
fragaria_vesca	FvH4_3g13350 FvH4_6g07670
malus_domestica	MD05G1242500.v1.1 MD10G1224300.v1.1
prunus_persica	Prupe.4G120900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022031
rosa_laevigata	RLG00000032639
rosa_multiflora	Rmu_sc0001585.1_g000011
rosa_rugosa	Rorug05G0070800
rosa_samantha	Rh5AG158700 Rh5BG158000 Rh5CG172500 Rh5DG158200
rosa_wichuraiana	Rw5G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	607
AatII	GACGTC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	491
AccI	GTMKAC	4 cut(s)	537, 549, 611, 912
AccII	CGCG	1 cut(s)	599
AciI	CCGC	7 cut(s)	581, 594, 597, 752, 786, 869, 967
AcsI	RAATTY	1 cut(s)	1017
AcvI	CACGTG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	773
AfaI	GTAC	3 cut(s)	339, 464, 1005
AfiI	CCNNNNNNNGG	2 cut(s)	232, 526
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 188, 220
AluBI	AGCT	2 cut(s)	402, 733
AluI	AGCT	2 cut(s)	402, 733
Alw26I	GTCTC	2 cut(s)	37, 286
Ama87I	CYCGRG	1 cut(s)	424
AoxI	GGCC	4 cut(s)	223, 235, 591, 615
ApeKI	GCWGC	1 cut(s)	730
ApoI	RAATTY	1 cut(s)	1017
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AspS9I	GGNCC	3 cut(s)	223, 235, 964
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	7 cut(s)	154, 181, 595, 664, 712, 874, 1025
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	964
BanI	GGYRCC	1 cut(s)	491
BbrPI	CACGTG	1 cut(s)	455
BbsI	GAAGAC	2 cut(s)	178, 310
BbvI	GCAGC	1 cut(s)	742
BccI	CCATC	9 cut(s)	413, 494, 530, 562, 580, 616, 751, 802, 979
BceAI	ACGGC	4 cut(s)	618, 630, 765, 816
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	37, 286
BfmI	CTRYAG	1 cut(s)	538
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	3 cut(s)	594, 597, 731
BlsI	GCNGC	3 cut(s)	595, 598, 732
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	964
BmeT110I	CYCGRG	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	223, 235, 964
BmiI	GGNNCC	2 cut(s)	28, 493
BmrFI	CCNGG	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	178, 310
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	444
BsaAI	YACGTR	2 cut(s)	455, 1007
BsaHI	GRCGYC	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	6 cut(s)	542, 572, 675, 705, 822, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 526
Bse118I	RCCGGY	2 cut(s)	494, 782
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	4 cut(s)	384, 405, 762, 819
BseLI	CCNNNNNNNGG	2 cut(s)	232, 526
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	6 cut(s)	5, 35, 239, 295, 317, 320
BseXI	GCAGC	1 cut(s)	742
Bsh1236I	CGCG	1 cut(s)	599
BshFI	GGCC	4 cut(s)	225, 237, 593, 617
BshNI	GGYRCC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	3 cut(s)	444, 495, 783
BslFI	GGGAC	2 cut(s)	760, 860
BslI	CCNNNNNNNGG	2 cut(s)	232, 526
BsmAI	GTCTC	2 cut(s)	37, 286
BsmBI	CGTCTC	2 cut(s)	37, 286
BsmFI	GGGAC	2 cut(s)	760, 860
BsnI	GGCC	4 cut(s)	225, 237, 593, 617
BsoBI	CYCGRG	1 cut(s)	424
BspACI	CCGC	7 cut(s)	581, 594, 597, 752, 786, 869, 967
BspANI	GGCC	4 cut(s)	225, 237, 593, 617
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	28, 493
BspQI	GCTCTTC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	491
BsrFI	RCCGGY	2 cut(s)	494, 782
BssAI	RCCGGY	2 cut(s)	494, 782
BssECI	CCNNGG	1 cut(s)	418
BssNAI	GTATAC	1 cut(s)	913
BssNI	GRCGYC	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	418
Bst1107I	GTATAC	1 cut(s)	913
Bst4CI	ACNGT	5 cut(s)	397, 635, 706, 880, 1013
Bst6I	CTCTTC	4 cut(s)	126, 257, 295, 509
BstACI	GRCGYC	1 cut(s)	773
BstBAI	YACGTR	2 cut(s)	455, 1007
BstC8I	GCNNGC	4 cut(s)	112, 496, 500, 579
BstDEI	CTNAG	2 cut(s)	34, 412
BstF5I	GGATG	4 cut(s)	384, 405, 762, 819
BstFNI	CGCG	1 cut(s)	599
BstMAI	GTCTC	2 cut(s)	37, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 792
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	538
BstSNI	TACGTA	1 cut(s)	1007
BstUI	CGCG	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	742
BstV2I	GAAGAC	2 cut(s)	178, 310
BstXI	CCANNNNNNTGG	2 cut(s)	220, 568
BstZ17I	GTATAC	1 cut(s)	913
BsuRI	GGCC	4 cut(s)	225, 237, 593, 617
BtrI	CACGTC	1 cut(s)	726
BtsCI	GGATG	4 cut(s)	384, 405, 762, 819
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	112, 496, 500, 579
Cfr10I	RCCGGY	2 cut(s)	494, 782
Cfr13I	GGNCC	3 cut(s)	223, 235, 964
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	338, 463, 1004
CspCI	CAANNNNNGTGG	2 cut(s)	838, 873
CviAII	CATG	7 cut(s)	96, 526, 562, 649, 796, 925, 1022
CviQI	GTAC	3 cut(s)	338, 463, 1004
DdeI	CTNAG	2 cut(s)	34, 412
DrdI	GACNNNNNNGTC	1 cut(s)	607
DseDI	GACNNNNNNGTC	1 cut(s)	607
Eam1104I	CTCTTC	4 cut(s)	126, 257, 295, 509
EarI	CTCTTC	4 cut(s)	126, 257, 295, 509
Eco105I	TACGTA	1 cut(s)	1007
Eco130I	CCWWGG	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	964
Eco72I	CACGTG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	418
Esp3I	CGTCTC	2 cut(s)	37, 286
FaeI	CATG	7 cut(s)	99, 529, 565, 652, 799, 928, 1025
FaqI	GGGAC	2 cut(s)	760, 860
FatI	CATG	7 cut(s)	95, 525, 561, 648, 795, 924, 1021
FauI	CCCGC	2 cut(s)	745, 779
FblI	GTMKAC	4 cut(s)	537, 549, 611, 912
Fnu4HI	GCNGC	3 cut(s)	594, 597, 731
FokI	GGATG	4 cut(s)	371, 392, 769, 826
Fsp4HI	GCNGC	3 cut(s)	594, 597, 731
GluI	GCNGC	3 cut(s)	594, 597, 731
HaeIII	GGCC	4 cut(s)	225, 237, 593, 617
HapII	CCGG	3 cut(s)	444, 495, 783
HgaI	GACGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	773
Hin1II	CATG	7 cut(s)	99, 529, 565, 652, 799, 928, 1025
HincII	GTYRAC	2 cut(s)	550, 612
HindII	GTYRAC	2 cut(s)	550, 612
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	3 cut(s)	444, 495, 783
HphI	GGTGA	7 cut(s)	154, 181, 595, 664, 712, 874, 1025
Hpy166II	GTNNAC	6 cut(s)	538, 550, 612, 841, 913, 1004
Hpy188I	TCNGA	3 cut(s)	450, 473, 999
Hpy188III	TCNNGA	2 cut(s)	721, 766
Hpy8I	GTNNAC	6 cut(s)	538, 550, 612, 841, 913, 1004
HpyAV	CCTTC	3 cut(s)	187, 308, 349
HpyCH4III	ACNGT	5 cut(s)	397, 635, 706, 880, 1013
HpyCH4IV	ACGT	6 cut(s)	454, 717, 725, 773, 819, 1006
HpyCH4V	TGCA	2 cut(s)	577, 795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 792
HpyF3I	CTNAG	2 cut(s)	34, 412
HpySE526I	ACGT	6 cut(s)	454, 717, 725, 773, 819, 1006
Hsp92I	GRCGYC	1 cut(s)	773
Hsp92II	CATG	7 cut(s)	99, 529, 565, 652, 799, 928, 1025
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	2 cut(s)	32, 407
LpnPI	CCDG	6 cut(s)	96, 181, 457, 508, 563, 796
Lsp1109I	GCAGC	1 cut(s)	742
MaeII	ACGT	6 cut(s)	454, 717, 725, 773, 819, 1006
MaeIII	GTNAC	4 cut(s)	358, 700, 721, 1007
MluCI	AATT	4 cut(s)	135, 185, 265, 1017
MmeI	TCCRAC	3 cut(s)	294, 393, 451
Mph1103I	ATGCAT	1 cut(s)	797
MroNI	GCCGGC	1 cut(s)	494
MseI	TTAA	2 cut(s)	375, 714
MslI	CAYNNNNRTG	3 cut(s)	218, 566, 974
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	3 cut(s)	444, 495, 783
MspR9I	CCNGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	602, 792
NaeI	GCCGGC	1 cut(s)	496
NciI	CCSGG	1 cut(s)	444
NgoMIV	GCCGGC	1 cut(s)	494
NlaIII	CATG	7 cut(s)	99, 529, 565, 652, 799, 928, 1025
NlaIV	GGNNCC	2 cut(s)	28, 493
NmuCI	GTSAC	3 cut(s)	358, 700, 721
NsiI	ATGCAT	1 cut(s)	797
PaeR7I	CTCGAG	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	2 cut(s)	608, 957
PdiI	GCCGGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	474
PflFI	GACNNNGTC	1 cut(s)	772
PkrI	GCNGC	3 cut(s)	595, 598, 732
PmaCI	CACGTG	1 cut(s)	455
PmlI	CACGTG	1 cut(s)	455
Ppu21I	YACGTR	2 cut(s)	455, 1007
PspCI	CACGTG	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	28, 493
PspPI	GGNCC	3 cut(s)	223, 235, 964
PspXI	VCTCGAGB	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	772
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	3 cut(s)	339, 464, 1005
RsaNI	GTAC	3 cut(s)	338, 463, 1004
RseI	CAYNNNNRTG	3 cut(s)	218, 566, 974
SalI	GTCGAC	2 cut(s)	548, 610
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	375, 714
SatI	GCNGC	3 cut(s)	594, 597, 731
Sau96I	GGNCC	3 cut(s)	223, 235, 964
ScaI	AGTACT	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	964
SlaI	CTCGAG	1 cut(s)	424
SmiMI	CAYNNNNRTG	3 cut(s)	218, 566, 974
SmlI	CTYRAG	2 cut(s)	76, 424
SmoI	CTYRAG	2 cut(s)	76, 424
SnaBI	TACGTA	1 cut(s)	1007
Sse9I	AATT	4 cut(s)	135, 185, 265, 1017
SsiI	CCGC	7 cut(s)	581, 594, 597, 752, 786, 869, 967
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	5 cut(s)	397, 635, 706, 880, 1013
TaiI	ACGT	6 cut(s)	457, 720, 728, 776, 822, 1009
TaqI	TCGA	5 cut(s)	425, 549, 611, 875, 932
TasI	AATT	4 cut(s)	135, 185, 265, 1017
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	2 cut(s)	596, 599
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	2 cut(s)	375, 714
Tru9I	TTAA	2 cut(s)	375, 714
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	3 cut(s)	358, 700, 721
TseI	GCWGC	1 cut(s)	730
Tsp45I	GTSAC	3 cut(s)	358, 700, 721
TspDTI	ATGAA	7 cut(s)	17, 52, 56, 196, 830, 941, 1010
TspGWI	ACGGA	3 cut(s)	19, 247, 325
TspRI	CASTG	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	772
VpaK11BI	GGWCC	1 cut(s)	964
XapI	RAATTY	1 cut(s)	1017
XhoI	CTCGAG	1 cut(s)	424
XmiI	GTMKAC	4 cut(s)	537, 549, 611, 912
ZraI	GACGTC	1 cut(s)	774
ZrmI	AGTACT	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.