Prupe.4G120900_v2.0.a1

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015201
Physical Location & Seq
Reverse (-)
6550419 .. 6551775
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G120900.1

Sequence Viewer

Length: 1191 bp
ATGGAGAGCTTAGTCCAAGCCTCACCCAAAAACTCCCCAAAAACCCACCACCATGGTGGCCACCACCATGACCAAAACTGCCCCACCCTCATCACCATCAACAACAACCCATCAACCCAACTGAGCAACAAAGACAAGCGCTCTATGCCCCTTCTAGTGATCAATTACTTGTGTCTCTTCATAGGCTCAGTCTCTTCAAGCCTACTCTCCAAGTACTATTTCATCCACAAAGGCTCGAGCATTTGGGTTTCTACATGGGTTCAATGTGCTGGCTTCCCTCTCCTCCTCCCTTTTGTTTTCACTCCTTATTATCTCCTCAATAGCACCCAAAGAAAACCCTTCTCTCACTTCACCCCAAAAATCTTAACCCTCTCCATTTTCATAGGCCTCATGTTGGGCCTCAACAACTTCCTCTTCTCTTGGGGCAACTCCTATCTCCCAGTCTCCACCTCCTCCCTCCTCCTCTCATCCCAGCTTGTCTTCAACCTCATTCTCTCAGTCATCATAGTCAAACAGAAAATCACATTTTCAAATCTCAACTGTGTGATCCTCCTAACAATAAGCTCAGTGCTCTTGGCCTTGGGGTCCAGCCATGACAAGCCTCCTGGCTTGACCCGTGGCAAGTACTTCTTGGGCTTCTTCTCCACCATTGGCGCAGGCTTGCTGTTTGCTCTCTATCTCCCAGTCATGGAGAAGATCTACAGAAAGGTTTACTGCTACGCCATGGTGATAGAAATGCAACTGGTGATGCAGGTCTCGGCCACGGCGCTGGCCACGCTCGGGATGGCCCTCAACGGTGCGTTTCGGGAGATGAAGGTAGAGAGCATGAGGGTGTTTGATAAAGGGCAGAGTATTTACTGGGTGACCGTGCTGTGCAACGTGGTGACGTGGCAGCTGTGCTTCATGGGGACGGCTGGGATGGTGTTCTTGACCTCATCGTTGACCGGGGGAATTTGCATGACGGCTTTGATGGGGATGAATGTGTTGGGAGGGGTTTTGGTGTATGGGGATGAGTTTGGGGGAGTGAAGGTGGTGTCTACTTTGTTGTGTGGGTGGGGGTTCTGTTCTTATGCGTATGGGATTTACATGAATACCAAACTAGGTAAAGAAGATGATGGAGATAAAGACAAAGAGGACACCCACCAAGGGATGGCGATGGGTGTGCGTAGTGTAAATGATAGTAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

397

Amino Acids

43.65

Weight (kDa)

8.97

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30840 AT1G30840
fragaria_vesca FvH4_3g13350 FvH4_6g07670
malus_domestica MD05G1242500.v1.1 MD10G1224300.v1.1
prunus_persica Prupe.4G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0022031
rosa_laevigata RLG00000032639
rosa_multiflora Rmu_sc0001585.1_g000011
rosa_rugosa Rorug05G0070800
rosa_samantha Rh5AG158700 Rh5BG158000 Rh5CG172500 Rh5DG158200
rosa_wichuraiana Rw5G014140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 742
AccB7I CCANNNNNTGG 1 cut(s) 1150
AccI GTMKAC 1 cut(s) 1037
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 3 cut(s) 58, 759, 771
AcsI RAATTY 1 cut(s) 951
AfaI GTAC 2 cut(s) 215, 626
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 5 cut(s) 394, 688, 780, 1146, 1150
AgsI TTSAA 4 cut(s) 198, 263, 484, 531
AjiI CACGTC 1 cut(s) 888
AjnI CCWGG 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 4 cut(s) 9, 475, 564, 895
AluI AGCT 4 cut(s) 9, 475, 564, 895
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 4 cut(s) 179, 196, 448, 760
AlwI GGATC 1 cut(s) 541
Ama87I CYCGRG 2 cut(s) 235, 779
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 7 cut(s) 58, 385, 397, 576, 759, 771, 786
ApeKI GCWGC 1 cut(s) 892
ApoI RAATTY 1 cut(s) 951
AspLEI GCGC 3 cut(s) 141, 656, 769
AspS9I GGNCC 3 cut(s) 397, 585, 787
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 7 cut(s) 15, 85, 343, 739, 757, 874, 895
AvaI CYCGRG 2 cut(s) 235, 779
AvaII GGWCC 1 cut(s) 585
BalI TGGCCA 2 cut(s) 60, 773
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 904
BccI CCATC 8 cut(s) 104, 118, 778, 913, 964, 1109, 1144, 1150
BceAI ACGGC 3 cut(s) 780, 927, 978
BcgI CGANNNNNNTGC 2 cut(s) 1144, 1178
BciT130I CCWGG 1 cut(s) 606
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 1 cut(s) 946
BcoDI GTCTC 4 cut(s) 179, 196, 448, 760
BfaI CTAG 2 cut(s) 155, 1100
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 2 cut(s) 142, 770
BfuAI ACCTGC 1 cut(s) 742
BglII AGATCT 1 cut(s) 696
BisI GCNGC 1 cut(s) 893
BlsI GCNGC 1 cut(s) 894
BmcAI AGTACT 2 cut(s) 215, 626
Bme1390I CCNGG 2 cut(s) 606, 946
Bme18I GGWCC 1 cut(s) 585
BmeT110I CYCGRG 2 cut(s) 235, 779
BmgBI CACGTC 1 cut(s) 888
BmgT120I GGNCC 3 cut(s) 397, 585, 787
BmiI GGNNCC 1 cut(s) 586
BmrFI CCNGG 2 cut(s) 606, 946
BmrI ACTGGG 3 cut(s) 434, 677, 868
BmsI GCATC 1 cut(s) 738
BmuI ACTGGG 3 cut(s) 434, 677, 868
BpiI GAAGAC 1 cut(s) 472
BpuMI CCSGG 1 cut(s) 946
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 7 cut(s) 52, 579, 616, 723, 762, 945, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 1014, 1044
Bsc4I CCNNNNNNNGG 5 cut(s) 394, 688, 780, 1146, 1150
Bse1I ACTGG 4 cut(s) 440, 683, 747, 863
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 7 cut(s) 52, 579, 616, 723, 762, 945, 1144
BseGI GGATG 7 cut(s) 222, 467, 789, 924, 981, 1015, 1155
BseLI CCNNNNNNNGG 5 cut(s) 394, 688, 780, 1146, 1150
BseMII CTCAG 4 cut(s) 113, 201, 510, 579
BseNI ACTGG 4 cut(s) 440, 683, 747, 863
BseRI GAGGAG 6 cut(s) 272, 275, 305, 442, 449, 452
BseXI GCAGC 1 cut(s) 904
BseYI CCCAGC 2 cut(s) 471, 914
BshFI GGCC 7 cut(s) 60, 387, 399, 578, 761, 773, 788
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 2 cut(s) 235, 779
BsiSI CCGG 1 cut(s) 945
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 5 cut(s) 394, 688, 780, 1146, 1150
BsmAI GTCTC 4 cut(s) 179, 196, 448, 760
BsmFI GGGAC 1 cut(s) 922
BsnI GGCC 7 cut(s) 60, 387, 399, 578, 761, 773, 788
Bso31I GGTCTC 1 cut(s) 760
BsoBI CYCGRG 2 cut(s) 235, 779
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 3 cut(s) 159, 546, 696
Bsp19I CCATGG 2 cut(s) 52, 723
BspANI GGCC 7 cut(s) 60, 387, 399, 578, 761, 773, 788
BspCNI CTCAG 4 cut(s) 114, 200, 509, 578
BspLI GGNNCC 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 760
BsrI ACTGG 4 cut(s) 440, 683, 747, 863
BssECI CCNNGG 7 cut(s) 52, 579, 616, 723, 762, 945, 1144
BssMI GATC 3 cut(s) 159, 546, 696
BssT1I CCWWGG 4 cut(s) 52, 579, 723, 1144
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 542, 797, 868
Bst6I CTCTTC 3 cut(s) 182, 199, 419
BstC8I GCNNGC 4 cut(s) 271, 658, 662, 771
BstDEI CTNAG 5 cut(s) 10, 122, 187, 496, 565
BstDSI CCRYGG 4 cut(s) 52, 616, 723, 762
BstEII GGTNACC 1 cut(s) 862
BstF5I GGATG 7 cut(s) 222, 467, 789, 924, 981, 1015, 1155
BstH2I RGCGCY 2 cut(s) 142, 770
BstHHI GCGC 3 cut(s) 141, 656, 769
BstKTI GATC 3 cut(s) 162, 549, 699
BstMAI GTCTC 4 cut(s) 179, 196, 448, 760
BstMBI GATC 3 cut(s) 159, 546, 696
BstMWI GCNNNNNNNGC 2 cut(s) 145, 775
BstNI CCWGG 1 cut(s) 606
BstPI GGTNACC 1 cut(s) 862
BstSCI CCNGG 2 cut(s) 604, 944
BstSFI CTRYAG 1 cut(s) 700
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 696
BstXI CCANNNNNNTGG 3 cut(s) 53, 56, 769
BstYI RGATCY 1 cut(s) 696
BsuRI GGCC 7 cut(s) 60, 387, 399, 578, 761, 773, 788
BtgI CCRYGG 4 cut(s) 52, 616, 723, 762
BtgZI GCGATG 1 cut(s) 1169
BtrI CACGTC 1 cut(s) 888
BtsCI GGATG 7 cut(s) 222, 467, 789, 924, 981, 1015, 1155
BtsIMutI CAGTG 1 cut(s) 573
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 4 cut(s) 271, 658, 662, 771
CfoI GCGC 3 cut(s) 141, 656, 769
Cfr13I GGNCC 3 cut(s) 397, 585, 787
Csp6I GTAC 2 cut(s) 214, 625
CviQI GTAC 2 cut(s) 214, 625
DdeI CTNAG 5 cut(s) 10, 122, 187, 496, 565
DpnI GATC 3 cut(s) 161, 548, 698
DpnII GATC 3 cut(s) 159, 546, 696
EaeI YGGCCR 3 cut(s) 58, 759, 771
Eam1104I CTCTTC 3 cut(s) 182, 199, 419
EarI CTCTTC 3 cut(s) 182, 199, 419
Eco130I CCWWGG 4 cut(s) 52, 579, 723, 1144
Eco147I AGGCCT 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 585
Eco47III AGCGCT 1 cut(s) 140
Eco88I CYCGRG 2 cut(s) 235, 779
Eco91I GGTNACC 1 cut(s) 862
EcoO65I GGTNACC 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 4 cut(s) 52, 579, 723, 1144
ErhI CCWWGG 4 cut(s) 52, 579, 723, 1144
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 1 cut(s) 922
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 1 cut(s) 893
FokI GGATG 7 cut(s) 209, 454, 796, 931, 988, 1022, 1162
Fsp4HI GCNGC 1 cut(s) 893
FspBI CTAG 2 cut(s) 155, 1100
GlaI GCGC 3 cut(s) 140, 655, 768
GluI GCNGC 1 cut(s) 893
GsaI CCCAGC 2 cut(s) 475, 918
HaeII RGCGCY 2 cut(s) 142, 770
HaeIII GGCC 7 cut(s) 60, 387, 399, 578, 761, 773, 788
HapII CCGG 1 cut(s) 945
HhaI GCGC 3 cut(s) 141, 656, 769
Hin6I GCGC 3 cut(s) 139, 654, 767
HinP1I GCGC 3 cut(s) 139, 654, 767
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HpaII CCGG 1 cut(s) 945
HphI GGTGA 7 cut(s) 15, 85, 343, 739, 757, 874, 895
Hpy166II GTNNAC 3 cut(s) 712, 942, 1038
Hpy188III TCNNGA 3 cut(s) 781, 806, 928
Hpy8I GTNNAC 3 cut(s) 712, 942, 1038
HpyAV CCTTC 4 cut(s) 161, 349, 808, 1021
HpyCH4III ACNGT 3 cut(s) 542, 797, 868
HpyCH4IV ACGT 2 cut(s) 879, 887
HpyCH4V TGCA 4 cut(s) 739, 751, 876, 957
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 775
HpyF3I CTNAG 5 cut(s) 10, 122, 187, 496, 565
HpySE526I ACGT 2 cut(s) 879, 887
HspAI GCGC 3 cut(s) 139, 654, 767
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 3 cut(s) 159, 546, 696
Lsp1109I GCAGC 1 cut(s) 904
LweI GCATC 1 cut(s) 738
MaeI CTAG 2 cut(s) 155, 1100
MaeII ACGT 2 cut(s) 879, 887
MaeIII GTNAC 2 cut(s) 862, 883
MalI GATC 3 cut(s) 161, 548, 698
MboI GATC 3 cut(s) 159, 546, 696
MboII GAAGA 7 cut(s) 169, 186, 406, 472, 631, 706, 1121
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 573
MlsI TGGCCA 2 cut(s) 60, 773
MluCI AATT 2 cut(s) 163, 951
MluNI TGGCCA 2 cut(s) 60, 773
Mox20I TGGCCA 2 cut(s) 60, 773
MscI TGGCCA 2 cut(s) 60, 773
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 4 cut(s) 51, 54, 66, 830
Msp20I TGGCCA 2 cut(s) 60, 773
MspA1I CMGCKG 1 cut(s) 895
MspI CCGG 1 cut(s) 945
MspR9I CCNGG 2 cut(s) 606, 946
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 145, 775
NciI CCSGG 1 cut(s) 946
NcoI CCATGG 2 cut(s) 52, 723
NdeII GATC 3 cut(s) 159, 546, 696
NlaIV GGNNCC 1 cut(s) 586
NmeAIII GCCGAG 1 cut(s) 737
NmuCI GTSAC 2 cut(s) 862, 883
OliI CACNNNNGTG 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 235
PceI AGGCCT 1 cut(s) 387
PflMI CCANNNNNTGG 1 cut(s) 1150
PkrI GCNGC 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 604
PspEI GGTNACC 1 cut(s) 862
PspFI CCCAGC 2 cut(s) 471, 914
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 586
PspPI GGNCC 3 cut(s) 397, 585, 787
PspXI VCTCGAGB 1 cut(s) 235
PsuI RGATCY 1 cut(s) 696
PvuII CAGCTG 1 cut(s) 895
RsaI GTAC 2 cut(s) 215, 626
RsaNI GTAC 2 cut(s) 214, 625
RseI CAYNNNNRTG 4 cut(s) 51, 54, 66, 830
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 1 cut(s) 893
Sau3AI GATC 3 cut(s) 159, 546, 696
Sau96I GGNCC 3 cut(s) 397, 585, 787
ScaI AGTACT 2 cut(s) 215, 626
ScrFI CCNGG 2 cut(s) 606, 946
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 1 cut(s) 700
Sfr274I CTCGAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 585
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 4 cut(s) 51, 54, 66, 830
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 2 cut(s) 163, 951
SseBI AGGCCT 1 cut(s) 387
SspMI CTAG 2 cut(s) 155, 1100
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 604, 944
StyI CCWWGG 4 cut(s) 52, 579, 723, 1144
TaaI ACNGT 3 cut(s) 542, 797, 868
TaiI ACGT 2 cut(s) 882, 890
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 163, 951
TatI WGTACW 2 cut(s) 213, 624
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 2 cut(s) 862, 883
TseI GCWGC 1 cut(s) 892
Tsp45I GTSAC 2 cut(s) 862, 883
TspDTI ATGAA 7 cut(s) 169, 211, 370, 827, 892, 992, 1103
TspRI CASTG 1 cut(s) 573
Van91I CCANNNNNTGG 1 cut(s) 1150
VpaK11BI GGWCC 1 cut(s) 585
XapI RAATTY 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 2 cut(s) 53, 781
XhoI CTCGAG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 1037
XspI CTAG 2 cut(s) 155, 1100
ZrmI AGTACT 2 cut(s) 215, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.