FvH4_6g08430

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008146
Physical Location & Seq
Forward (+)
4993749 .. 4998448
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08430.t2

Sequence Viewer

Length: 2187 bp
ATGGCTATAAAGCTCCGGCCTTTATCTTTTTCCAAGGGATTCCCCATCTGGGTTTCTTCAACTGCTTACCTTTCTTCAATCTCATGCGCTAAAACCATTGAACTCCACCCAGAAAACAATCCAGACCCACCGAATTTATCTGAATTTGAGCAAAATATTCAGTCTTTGAAGACCAAGCTTGTTCCTGATAACTTGGCCCGGGTTTTGGATAACACTGATGATTTGAGCTCGGCAGTGAAGCTCTTCAAATGGGCTTCACTCCAGAAACGGTTTACCCACACCGCCGAAACGTATTTTAAGATAGTTCTGAAGCTGGGTTTGGCTGGAAATGTTAAGGAAATGGAAGGGTTTTGTCATCATATGGTCAAAGATAGATGTCCTGGTGTTGGAGAAGCTCTTTTGGAATTGATTGATGTGTTTGTTAGGCATGGCAGGGTGAGTGAGGCAGTTAGGGTGCTTGTGAATATGACAGCAGGTGGATATAGGGTGTCAGTTGAGACATTTAATGTAATATTGGGTGCTCTTGTGAAGGAGAAGAGGGATTTTCGAGACATGGTGCTTGTTTATAAGGAGATGGTGAAGGCAGGGGTGTTACCGACTGTTGAGACCTTGAATTATTTGATACAGGGTTTGTTGGAGAGTGATCGGTTTGAGTCGGCTTTGGATCAGTATAGGAGGATGAGAAAGAAGGGGTGTAGTCCTAATAGTAGAACATTTGAGATAATCATACAGGCCCTTTTTGCAAAGGATCGCATGGATGAAGCTGTTATTGTTTTAAGTGAAATGTTTGTACTTGATTATCAGCTTGATTTGAGTTTTTATACTTGCATAATACCTTTGTTATGTAGAGAAAATAAACCAGCAGAGGGAATCAGATTGTTCAAGATGATGCGAGCTTCAGATGTTATGCCGGATTCACGGATTTATGGGGTTCTATTACAGTGTTTATGCAAAAACCTATACTTAGATGATTCGATAAAGGTTCTAGAAGACATGATAGAAACTGGATTGACACCACCCAGTCATGTGTTTGTGGATGTAATGAATGTCTTCTGTACATTGGGAAAGATAGATGATGCTCTGAAGTTCTTGGAAGATAAGCATATCCTTGAAACTTCTGCCTATAATGTGTTGCTTGAAGGTTGCTGCAATACTGGTAAAATTACCATAGCAAAAGATCTACTTGTGAAAATGTCGGAAAGAAACCTAGCTGATTGTAATTCTTGGAATATTCTCATCAGATGGCTCTGTGAGAACGCAAGGATTAGGGAAGTGTTTGAACTTCTTGGTAGAATGGTGGTGTCATTTTCTATTCCTGATTGTGCTACATACTCGGCTCTTGTTGTTGGCAACTGCAGAATCAGTAATTACAGAAAAGCTCTTGATATATTTCAACATGTTCGTGCCAAATACTGGCTTTTGGATCCTACATCTTACTCTGAGCTTGTCAAAGGCCTTTGCCTGGAGGAAATGGCTCGCGAGGCGGCTGATGTGTTCTATTACATGTCTAGTAATGGATGCTCTCTCCAGTCTTCCTCCTTCAATATGTTGATCAAGGGTATTTGTGAGACAGGAAAGGTTAGTGAAGCAATACGGCTACAGAAACTGGCGTACTATTCTGGTACTTTTTATACAAGTTCAACTTATTCCACCATTTTGATAGGATTATCAAGATTAGACAAGACAAAAGAACAGATGATTATCCTATCAAAAATGCTGGTGGAGGGTTGTAATTTTGATTTGGACGCCTACTGCATCCTCATACAAAGCATGAGTGAGCAGAATCGAGTAAAAGAATGTGTATTGCTTTTCAGCATGATGGTCAGTAAGGGTCTTGAACCTGATTCAGAGAGACTAGTTAGTCTACTGTCTTGTATAGACAAGCATTCTCAGTTGCACAGAATTTTAGGATCAATTCATAATCTTATTCGCAATAGTGAAGTTCTAAATTCAACAGCCTACAACATCCTAATTCATGGCCTCTGGAAAGAGGGTTATAAACATGACGCCAGCAGATTTTTGGATACGATCTTGGAGAAGGGTTGGGTGCCAGATGCAAAGACTCATGCGTTGTTGATCGGGTCTGCTGTAAGTGACGAAGTAGATAGGAAATCACTGGACTATGATACTTTCAGTGGCCAAGATACTGTTAGCAACATCCTTGCAGAGGGCTTAGATGCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

729

Amino Acids

82.23

Weight (kDa)

6.04

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 136 - 226 1e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 164 - 211 1.3e-07 PPR repeat family
PPR_2 PF13041 199 - 246 2.2e-11 PPR repeat family
PPR_2 PF13041 272 - 318 2.6e-07 PPR repeat family
PPR_2 PF13041 408 - 453 1.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 567, 1998
AarI CACCTGC 1 cut(s) 464
AasI GACNNNNNNGTC 1 cut(s) 1860
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 2047
AccB7I CCANNNNNTGG 1 cut(s) 1413
AccI GTMKAC 1 cut(s) 1864
AccII CGCG 1 cut(s) 1479
AciI CCGC 2 cut(s) 282, 1484
AclWI GGATC 5 cut(s) 672, 756, 1418, 1431, 1918
AcoI YGGCCR 1 cut(s) 2137
AcsI RAATTY 4 cut(s) 133, 143, 1902, 1948
AcuI CTGAAG 3 cut(s) 329, 882, 1103
AcyI GRCGYC 2 cut(s) 1746, 2007
AfaI GTAC 4 cut(s) 792, 1057, 1613, 1624
AfiI CCNNNNNNNGG 7 cut(s) 49, 205, 386, 866, 1413, 1462, 2167
AflIII ACRYGT 2 cut(s) 1396, 1503
AhlI ACTAGT 1 cut(s) 1855
AjnI CCWGG 2 cut(s) 379, 1461
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
Alw21I GWGCWC 2 cut(s) 230, 523
Alw26I GTCTC 5 cut(s) 491, 543, 599, 1562, 1846
AlwI GGATC 5 cut(s) 672, 756, 1418, 1431, 1918
AlwNI CAGNNNCTG 1 cut(s) 1606
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 6 cut(s) 17, 195, 732, 1453, 1978, 2137
ApeKI GCWGC 1 cut(s) 1146
ApoI RAATTY 4 cut(s) 133, 143, 1902, 1948
Asp700I GAANNNNTTC 2 cut(s) 242, 1049
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 196, 733
AsuC2I CCSGG 2 cut(s) 199, 200
AsuHPI GGTGA 2 cut(s) 448, 589
AvaI CYCGRG 1 cut(s) 198
BalI TGGCCA 1 cut(s) 2139
BamHI GGATCC 1 cut(s) 1423
BanI GGYRCC 1 cut(s) 2047
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 4 cut(s) 176, 996, 1042, 1524
Bbv12I GWGCWC 2 cut(s) 230, 523
BbvI GCAGC 1 cut(s) 1133
BccI CCATC 4 cut(s) 53, 568, 1236, 1813
BceAI ACGGC 1 cut(s) 1610
BciT130I CCWGG 2 cut(s) 381, 1463
BciVI GTATCC 1 cut(s) 2017
BclI TGATCA 1 cut(s) 1551
BcnI CCSGG 2 cut(s) 199, 200
BcoDI GTCTC 5 cut(s) 491, 543, 599, 1562, 1846
BcuI ACTAGT 1 cut(s) 1855
BfaI CTAG 4 cut(s) 986, 1208, 1509, 1856
BfmI CTRYAG 2 cut(s) 1354, 1598
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 2017
BglII AGATCT 1 cut(s) 1177
BisI GCNGC 2 cut(s) 1147, 1485
BlsI GCNGC 2 cut(s) 1148, 1486
Bme1390I CCNGG 4 cut(s) 199, 200, 381, 1463
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 196, 733
BmiI GGNNCC 2 cut(s) 1425, 2049
BmrFI CCNGG 4 cut(s) 199, 200, 381, 1463
BmrI ACTGGG 1 cut(s) 1014
BmsI GCATC 6 cut(s) 879, 1066, 1508, 1764, 2044, 2167
BmuI ACTGGG 1 cut(s) 1014
BpiI GAAGAC 4 cut(s) 176, 996, 1042, 1524
BpmI CTGGAG 3 cut(s) 245, 1484, 1511
BpuMI CCSGG 2 cut(s) 199, 200
BsaBI GATNNNNATC 1 cut(s) 1700
BsaHI GRCGYC 2 cut(s) 1746, 2007
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 33, 198
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 205, 386, 866, 1413, 1462, 2167
Bse1I ACTGG 7 cut(s) 1009, 1020, 1159, 1418, 1528, 1611, 2121
Bse8I GATNNNNATC 1 cut(s) 1700
BseBI CCWGG 2 cut(s) 381, 1463
BseDI CCNNGG 2 cut(s) 33, 198
BseGI GGATG 7 cut(s) 684, 763, 1042, 1523, 1755, 1965, 2157
BseJI GATNNNNATC 1 cut(s) 1700
BseLI CCNNNNNNNGG 7 cut(s) 49, 205, 386, 866, 1413, 1462, 2167
BseMII CTCAG 2 cut(s) 1431, 1904
BseNI ACTGG 7 cut(s) 1009, 1020, 1159, 1418, 1528, 1611, 2121
BseXI GCAGC 1 cut(s) 1133
BseYI CCCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 1479
BshFI GGCC 6 cut(s) 19, 197, 734, 1455, 1980, 2139
BshNI GGYRCC 1 cut(s) 2047
BsiHKAI GWGCWC 2 cut(s) 230, 523
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 3 cut(s) 16, 199, 911
BslI CCNNNNNNNGG 7 cut(s) 49, 205, 386, 866, 1413, 1462, 2167
BsmAI GTCTC 5 cut(s) 491, 543, 599, 1562, 1846
BsmI GAATGC 1 cut(s) 1885
BsnI GGCC 6 cut(s) 19, 197, 734, 1455, 1980, 2139
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 230, 523
Bsp1407I TGTACA 1 cut(s) 1055
Bsp143I GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
Bsp68I TCGCGA 1 cut(s) 1479
BspACI CCGC 2 cut(s) 282, 1484
BspANI GGCC 6 cut(s) 19, 197, 734, 1455, 1980, 2139
BspCNI CTCAG 2 cut(s) 1432, 1903
BspFNI CGCG 1 cut(s) 1479
BspLI GGNNCC 2 cut(s) 1425, 2049
BspMAI CTGCAG 1 cut(s) 1358
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 5 cut(s) 672, 756, 1418, 1431, 1918
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 2047
BspTNI GGTCTC 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 1055
BsrI ACTGG 7 cut(s) 1009, 1020, 1159, 1418, 1528, 1611, 2121
BssECI CCNNGG 2 cut(s) 33, 198
BssMI GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
BssNI GRCGYC 2 cut(s) 1746, 2007
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 381, 1463
Bst4CI ACNGT 5 cut(s) 270, 601, 942, 1869, 2149
Bst6I CTCTTC 2 cut(s) 248, 530
BstACI GRCGYC 2 cut(s) 1746, 2007
BstAUI TGTACA 1 cut(s) 1055
BstC8I GCNNGC 3 cut(s) 894, 1477, 2011
BstDEI CTNAG 4 cut(s) 964, 1440, 1890, 2173
BstENI CCTNNNNNAGG 1 cut(s) 2165
BstF5I GGATG 7 cut(s) 684, 763, 1042, 1523, 1755, 1965, 2157
BstFNI CGCG 1 cut(s) 1479
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 9 cut(s) 646, 667, 751, 1180, 1426, 1554, 1913, 2031, 2079
BstMAI GTCTC 5 cut(s) 491, 543, 599, 1562, 1846
BstMBI GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
BstMWI GCNNNNNNNGC 2 cut(s) 740, 1481
BstNI CCWGG 2 cut(s) 381, 1463
BstNSI RCATGY 2 cut(s) 1400, 1507
BstSCI CCNGG 4 cut(s) 197, 198, 379, 1461
BstSFI CTRYAG 2 cut(s) 1354, 1598
BstUI CGCG 1 cut(s) 1479
BstV1I GCAGC 1 cut(s) 1133
BstV2I GAAGAC 4 cut(s) 176, 996, 1042, 1524
BstX2I RGATCY 2 cut(s) 1177, 1423
BstYI RGATCY 2 cut(s) 1177, 1423
BsuI GTATCC 1 cut(s) 2017
BsuRI GGCC 6 cut(s) 19, 197, 734, 1455, 1980, 2139
BtsCI GGATG 7 cut(s) 684, 763, 1042, 1523, 1755, 1965, 2157
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 5 cut(s) 213, 240, 947, 2114, 2140
BtuMI TCGCGA 1 cut(s) 1479
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 3 cut(s) 894, 1477, 2011
CaiI CAGNNNCTG 1 cut(s) 1606
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 196, 733
Cfr9I CCCGGG 1 cut(s) 198
CseI GACGC 2 cut(s) 1754, 2015
Csp6I GTAC 4 cut(s) 791, 1056, 1612, 1623
CviQI GTAC 4 cut(s) 791, 1056, 1612, 1623
DdeI CTNAG 4 cut(s) 964, 1440, 1890, 2173
DpnI GATC 9 cut(s) 645, 666, 750, 1179, 1425, 1553, 1912, 2030, 2078
DpnII GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
DrdI GACNNNNNNGTC 1 cut(s) 1860
DseDI GACNNNNNNGTC 1 cut(s) 1860
EaeI YGGCCR 1 cut(s) 2137
Eam1104I CTCTTC 2 cut(s) 248, 530
EarI CTCTTC 2 cut(s) 248, 530
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 1455
Eco24I GRGCYC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 3 cut(s) 329, 882, 1103
Eco88I CYCGRG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 2165
EcoO109I RGGNCCY 1 cut(s) 733
EcoRII CCWGG 2 cut(s) 379, 1461
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 33
FalI AAGNNNNNCTT 4 cut(s) 1167, 1199, 1627, 1659
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 1 cut(s) 1551
FblI GTMKAC 1 cut(s) 1864
Fnu4HI GCNGC 2 cut(s) 1147, 1485
FokI GGATG 7 cut(s) 691, 770, 1049, 1530, 1742, 1952, 2144
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 1147, 1485
FspBI CTAG 4 cut(s) 986, 1208, 1509, 1856
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 1147, 1485
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 3 cut(s) 245, 1484, 1511
HaeIII GGCC 6 cut(s) 19, 197, 734, 1455, 1980, 2139
HapII CCGG 3 cut(s) 16, 199, 911
HgaI GACGC 2 cut(s) 1754, 2015
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 2 cut(s) 1746, 2007
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 9 cut(s) 39, 653, 870, 914, 971, 1359, 1783, 1844, 2062
HpaII CCGG 3 cut(s) 16, 199, 911
HphI GGTGA 2 cut(s) 448, 589
Hpy166II GTNNAC 2 cut(s) 273, 1865
Hpy188I TCNGA 9 cut(s) 142, 309, 875, 901, 1083, 1198, 1241, 1441, 1849
Hpy8I GTNNAC 2 cut(s) 273, 1865
HpyAV CCTTC 7 cut(s) 338, 523, 574, 682, 1133, 1549, 2032
HpyCH4III ACNGT 5 cut(s) 270, 601, 942, 1869, 2149
HpyCH4IV ACGT 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 1481
HpyF3I CTNAG 4 cut(s) 964, 1440, 1890, 2173
HpySE526I ACGT 1 cut(s) 290
Hsp92I GRCGYC 2 cut(s) 1746, 2007
HspAI GCGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 1551
Kzo9I GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 1133
LweI GCATC 6 cut(s) 879, 1066, 1508, 1764, 2044, 2167
MaeI CTAG 4 cut(s) 986, 1208, 1509, 1856
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 2 cut(s) 591, 2093
MalI GATC 9 cut(s) 645, 666, 750, 1179, 1425, 1553, 1912, 2030, 2078
MboI GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
MboII GAAGA 9 cut(s) 48, 66, 181, 235, 547, 1001, 1042, 1106, 1524
MflI RGATCY 2 cut(s) 1177, 1423
MhlI GDGCHC 2 cut(s) 230, 523
MlsI TGGCCA 1 cut(s) 2139
MluNI TGGCCA 1 cut(s) 2139
MlyI GAGTC 2 cut(s) 662, 2056
MmeI TCCRAC 3 cut(s) 367, 615, 1176
Mox20I TGGCCA 1 cut(s) 2139
MroXI GAANNNNTTC 2 cut(s) 242, 1049
MscI TGGCCA 1 cut(s) 2139
MseI TTAA 4 cut(s) 297, 333, 504, 776
MslI CAYNNNNRTG 1 cut(s) 1401
Msp20I TGGCCA 1 cut(s) 2139
MspI CCGG 3 cut(s) 16, 199, 911
MspR9I CCNGG 4 cut(s) 199, 200, 381, 1463
Mva1269I GAATGC 1 cut(s) 1885
MvaI CCWGG 2 cut(s) 381, 1463
MvnI CGCG 1 cut(s) 1479
MwoI GCNNNNNNNGC 2 cut(s) 740, 1481
NciI CCSGG 2 cut(s) 199, 200
NdeI CATATG 1 cut(s) 360
NdeII GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
NlaIV GGNNCC 2 cut(s) 1425, 2049
NmeAIII GCCGAG 2 cut(s) 209, 1313
NmuCI GTSAC 1 cut(s) 2093
NruI TCGCGA 1 cut(s) 1479
NspI RCATGY 2 cut(s) 1400, 1507
PaqCI CACCTGC 1 cut(s) 464
PceI AGGCCT 1 cut(s) 1455
PciI ACATGT 2 cut(s) 1396, 1503
PciSI GCTCTTC 1 cut(s) 248
PctI GAATGC 1 cut(s) 1885
PdmI GAANNNNTTC 2 cut(s) 242, 1049
PfeI GAWTC 7 cut(s) 39, 870, 914, 971, 1359, 1783, 1844
PflMI CCANNNNNTGG 1 cut(s) 1413
PkrI GCNGC 2 cut(s) 1148, 1486
PleI GAGTC 2 cut(s) 661, 2056
PpsI GAGTC 2 cut(s) 661, 2056
PscI ACATGT 2 cut(s) 1396, 1503
PsiI TTATAA 2 cut(s) 567, 1998
Psp124BI GAGCTC 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 379, 1461
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 2 cut(s) 379, 1461
PspN4I GGNNCC 2 cut(s) 1425, 2049
PspPI GGNCC 2 cut(s) 196, 733
PstI CTGCAG 1 cut(s) 1358
PstNI CAGNNNCTG 1 cut(s) 1606
PsuI RGATCY 2 cut(s) 1177, 1423
RruI TCGCGA 1 cut(s) 1479
RsaI GTAC 4 cut(s) 792, 1057, 1613, 1624
RsaNI GTAC 4 cut(s) 791, 1056, 1612, 1623
RseI CAYNNNNRTG 1 cut(s) 1401
SacI GAGCTC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 4 cut(s) 297, 333, 504, 776
SatI GCNGC 2 cut(s) 1147, 1485
Sau3AI GATC 9 cut(s) 643, 664, 748, 1177, 1423, 1551, 1910, 2028, 2076
Sau96I GGNCC 2 cut(s) 196, 733
SchI GAGTC 2 cut(s) 662, 2056
ScrFI CCNGG 4 cut(s) 199, 200, 381, 1463
SduI GDGCHC 2 cut(s) 230, 523
SfaNI GCATC 6 cut(s) 879, 1066, 1508, 1764, 2044, 2167
SfcI CTRYAG 2 cut(s) 1354, 1598
SmaI CCCGGG 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 1401
SpeI ACTAGT 1 cut(s) 1855
SseBI AGGCCT 1 cut(s) 1455
SsiI CCGC 2 cut(s) 282, 1484
SspI AATATT 3 cut(s) 157, 513, 1231
SspMI CTAG 4 cut(s) 986, 1208, 1509, 1856
SstI GAGCTC 1 cut(s) 230
StuI AGGCCT 1 cut(s) 1455
StyD4I CCNGG 4 cut(s) 197, 198, 379, 1461
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 5 cut(s) 270, 601, 942, 1869, 2149
TaiI ACGT 1 cut(s) 293
TaqI TCGA 3 cut(s) 547, 974, 1786
TatI WGTACW 2 cut(s) 790, 1055
TauI GCSGC 1 cut(s) 1487
TfiI GAWTC 7 cut(s) 39, 870, 914, 971, 1359, 1783, 1844
Tru1I TTAA 4 cut(s) 297, 333, 504, 776
Tru9I TTAA 4 cut(s) 297, 333, 504, 776
TscAI CASTG 5 cut(s) 220, 240, 947, 2121, 2140
TseFI GTSAC 1 cut(s) 2093
TseI GCWGC 1 cut(s) 1146
Tsp45I GTSAC 1 cut(s) 2093
TspDTI ATGAA 4 cut(s) 774, 1058, 1907, 1964
TspGWI ACGGA 1 cut(s) 934
TspMI CCCGGG 1 cut(s) 198
TspRI CASTG 5 cut(s) 220, 240, 947, 2121, 2140
Van91I CCANNNNNTGG 1 cut(s) 1413
XagI CCTNNNNNAGG 1 cut(s) 2165
XapI RAATTY 4 cut(s) 133, 143, 1902, 1948
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 2 cut(s) 1400, 1507
XcmI CCANNNNNNNNNTGG 1 cut(s) 2017
XmaI CCCGGG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 1864
XmnI GAANNNNTTC 2 cut(s) 242, 1049
XspI CTAG 4 cut(s) 986, 1208, 1509, 1856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.