MD04G1187000.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0008146
Physical Location & Seq
Reverse (-)
27767985 .. 27770381
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1187000.v1.1.491

Sequence Viewer

Length: 2187 bp
ATGTTCATAAAGCTCCATCCTTTAACATTTTCCAAGAGAATCCCCAGCTGGGTCTGCTCGAATGCATATTTTTCTGCATCTTCCTGCGCAAAAACAATCGAAATTTTCTCGGGAAACAATCAGGACCCAGAATATTCATCCGACGTTGAACAAAATATCCAGTCTTTGAGGAATAAGCTTGTCCCGGATAACTTAATCCGGGTTCTGGATAACACTGATGATTTGAGCTCAGCAGTGAAGGTGTTCAAATGGGCTTCCCTGCAAAAACGGTTTAATCACACCGCCGATACGTATTTTCGGATTGTTTTGAAACTGGGTTTGGCTGGAAATGTTGAGGAGATGGAGGGGTTTTGTCAAAATATGGTGAAAGATCGGTGTCCGGGTGCCGAAGAGGCGCTTTTGGCCCTGATTGATGTGTTTGTTAGTCATTGCAGGTTAAGTGAGGCAATTAGGGTGCTTGTGAATTTGAAAGCAGGTGGCTTTAGGCCTTCAATAGAGATATTTAATGGTCTGTTGGGTGCTCTTGTGAAAGATAAGAGAGATTTTCGAGATGTCTTGTTTGTGTATAAGGAGATTGTGACGGCAGGAATCGTGCCAACAGTTGATACTTTGAATTATTTGTTAGAGGCATTGGTGGAGGCCAACCGCATTGAGTCTGCTCTGGATCAGTATAGAAGAATGAAGAAGAAAAGGTGTAGTCCTAATAGTAGGAGTTTTGAGATTCTATTAAAAGCCCTTATAGCGGAAGACCGAGTGGATGAGGCTGTTATTGTTTTGAATGAAATGGTTGATCTTGGTTGTCAGCCTGATTTGAGTTTTTATTCCTTCATAATACCTTTGTTTTGTCAGGAAAATAAACCGGATGAGGGAATTAGATTGTTCGAAATGATGAGAGCTTCAAATTTTACGCCGGATTCATTGGTTTATGAGGTTCTGTTGCAGTCTTTATGCAAGAACCTTAGATTAGATGATGCGATAAAGGTTTTAGAAGAAATGATGGAAACTGGATTGACACCACCAAATAATGTCTTTGTGGATGTAGTATATGTGTTTTGTAAATTAGGGAAGGTAGACAACGCAATGAAATTCTTGGAGGATAAGAAAATCATGGAAACTTCTGCCTGCAATGTCCTGCTTGAAGGTTTCTGCAGTGTAGGTAAATTTCTTGTGGCGGAAGATCTACTAGTGGAAATGTCCGAAAGGAATGTGGCTAGTTGTAATTCTTGGAATATTGTTATCAGATGGCTGAGCAAGAATGGAAGGATTAGGGAAGTGATGGAACTTCTAGGTAGAATGGTGGTTTCTTCTTTTCTTCCAGACTGTGACACATACTCCGCTCTGGTCGTTTGCCACTGCAAAATGAGCAACTATAGAAATGCTCTGGATATATTTCATCAGGCTCGTGCCAAAAGTTGGGTTTTGGATCGTACATCTTACTCTGAGCTTGTCAAAGGCCTTTGCCTAGAAGAAATGACTCATGAGGCTACTGAAGTGTTCTGTTACATGTCTAGTAATAGATGTTTCATCGAGCCTTCCTCATTCAATATGTTGATCAAGGGTTTGTGTGAGACGGGAAAGGTTGATGAAGCAATAAGGATGCAACAATTGGCCTATTATTCCGGTACTTCTTCTACCAGTTCAACGTACTCAACTATTATGCTTGGATTGTCAAAATTAGACAAGGTAAAAGATCTGTTGGTAGTTTTCTCAAAAATGCTGGTGGAAGGTTGCAATCTTGATTTGGATGCATTCTGCGTGCTCATACAAACCATGAGCTTGCAGAATCGAGTAAAAGAATGCGTATTGCTTTTTGATATGGTGGTCGATGGGGGTCTTATACCTGATTCAGAGAGACTATTAAATCTACTCTCCTGCATAGCCAACCATTCTCAGTTGCACATGATTTCAGGTTCAATAAATAAACTTATTTCTGATAGTGAAGTTCTAAATTCAGCAATTTACAATGTACTGATTAACGGATTCTGGAAAGAGGGTTATAAACACGAGGCCTGTCAATTTTTGGATTTAATGTTGGAAAAGGGTTGGGTCCCAGATGCTAGGACTCATGGATTGCTGATTGGGTCTGTTGTTGGCGAAGTAGATAGGAACAGGTTGGACTATGATAATTGCACTGTCCAAGATAGTGTTAGCAACATCCTTGCAGAGGGATTAGATGATGTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

729

Amino Acids

82.07

Weight (kDa)

5.13

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 135 - 226 1.3e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 199 - 246 9.3e-10 PPR repeat family
PPR_long PF17177 216 - 314 8.9e-06 Pentacotripeptide-repeat region of PRORP
PPR_long PF17177 251 - 367 7.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 269 - 318 4.6e-08 PPR repeat family
PPR_1 PF12854 301 - 332 1.8e-06 PPR repeat
PPR_2 PF13041 408 - 453 3.3e-08 PPR repeat family
PPR_2 PF13041 650 - 694 1.3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1998
AarI CACCTGC 1 cut(s) 464
Acc16I TGCGCA 1 cut(s) 88
Acc36I ACCTGC 2 cut(s) 423, 464
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1413
AccBSI CCGCTC 1 cut(s) 1337
AccI GTMKAC 1 cut(s) 1071
AciI CCGC 5 cut(s) 282, 646, 743, 1172, 1335
AclWI GGATC 2 cut(s) 672, 1431
AcsI RAATTY 6 cut(s) 102, 463, 901, 1085, 1160, 1948
AcuI CTGAAG 1 cut(s) 1509
AfaI GTAC 4 cut(s) 1429, 1624, 1646, 1968
AfiI CCNNNNNNNGG 6 cut(s) 49, 205, 742, 866, 1413, 2164
AflIII ACRYGT 1 cut(s) 1503
AhlI ACTAGT 1 cut(s) 1183
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 7 cut(s) 13, 48, 178, 228, 896, 1444, 1776
AluI AGCT 7 cut(s) 13, 48, 178, 228, 896, 1444, 1776
Alw21I GWGCWC 3 cut(s) 230, 523, 1761
Alw26I GTCTC 2 cut(s) 1562, 1846
AlwI GGATC 2 cut(s) 672, 1431
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 6 cut(s) 402, 485, 639, 1453, 1608, 2007
ApoI RAATTY 6 cut(s) 102, 463, 901, 1085, 1160, 1948
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 89, 397
AspS9I GGNCC 3 cut(s) 124, 403, 2047
AsuC2I CCSGG 3 cut(s) 185, 200, 381
AsuHPI GGTGA 1 cut(s) 376
AsuII TTCGAA 1 cut(s) 882
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 2 cut(s) 124, 2047
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 230
BauI CACGAG 2 cut(s) 1401, 2003
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 230, 523, 1761
BccI CCATC 6 cut(s) 24, 334, 991, 1236, 1270, 1820
BceAI ACGGC 1 cut(s) 597
BclI TGATCA 1 cut(s) 1551
BcnI CCSGG 3 cut(s) 185, 200, 381
BcoDI GTCTC 2 cut(s) 1562, 1846
BcuI ACTAGT 1 cut(s) 1183
BfaI CTAG 6 cut(s) 1184, 1212, 1286, 1463, 1509, 2058
BfmI CTRYAG 2 cut(s) 1147, 1369
BfoI RGCGCY 1 cut(s) 398
BfuAI ACCTGC 2 cut(s) 423, 464
BglI GCCNNNNNGGC 1 cut(s) 392
BglII AGATCT 2 cut(s) 1177, 1690
BlpI GCTNAGC 2 cut(s) 229, 1247
Bme1390I CCNGG 3 cut(s) 185, 200, 381
Bme18I GGWCC 2 cut(s) 124, 2047
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 124, 403, 2047
BmiI GGNNCC 4 cut(s) 126, 385, 2048, 2049
BmrFI CCNGG 3 cut(s) 185, 200, 381
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 5 cut(s) 86, 961, 1587, 1735, 2044
BmuI ACTGGG 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 753
BplI GAGNNNNNCTC 2 cut(s) 1520, 1552
Bpu1102I GCTNAGC 2 cut(s) 229, 1247
Bpu14I TTCGAA 1 cut(s) 882
BpuMI CCSGG 3 cut(s) 185, 200, 381
BsaAI YACGTR 1 cut(s) 291
BsaWI WCCGGW 2 cut(s) 859, 1619
BsaXI ACNNNNNCTCC 2 cut(s) 1316, 1346
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 205, 742, 866, 1413, 2164
Bse1I ACTGG 4 cut(s) 160, 318, 1009, 1635
Bse3DI GCAATG 3 cut(s) 427, 1086, 1132
BseGI GGATG 8 cut(s) 16, 137, 763, 868, 1042, 1602, 1750, 2154
BseLI CCNNNNNNNGG 6 cut(s) 49, 205, 742, 866, 1413, 2164
BseMI GCAATG 3 cut(s) 427, 1086, 1132
BseMII CTCAG 4 cut(s) 243, 1238, 1431, 1904
BseNI ACTGG 4 cut(s) 160, 318, 1009, 1635
BseRI GAGGAG 1 cut(s) 350
BseYI CCCAGC 2 cut(s) 44, 48
BshFI GGCC 6 cut(s) 404, 487, 641, 1455, 1610, 2009
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 3 cut(s) 230, 523, 1761
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 6 cut(s) 185, 199, 380, 860, 911, 1620
BslFI GGGAC 2 cut(s) 167, 2033
BslI CCNNNNNNNGG 6 cut(s) 49, 205, 742, 866, 1413, 2164
BsmAI GTCTC 2 cut(s) 1562, 1846
BsmBI CGTCTC 1 cut(s) 1562
BsmFI GGGAC 2 cut(s) 167, 2033
BsmI GAATGC 3 cut(s) 67, 1748, 1802
BsnI GGCC 6 cut(s) 404, 487, 641, 1455, 1610, 2009
BsoBI CYCGRG 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 882
Bsp1286I GDGCHC 3 cut(s) 230, 523, 1761
Bsp143I GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
Bsp1720I GCTNAGC 2 cut(s) 229, 1247
BspACI CCGC 5 cut(s) 282, 646, 743, 1172, 1335
BspANI GGCC 6 cut(s) 404, 487, 641, 1455, 1610, 2009
BspCNI CTCAG 4 cut(s) 242, 1239, 1432, 1903
BspHI TCATGA 1 cut(s) 1477
BspLI GGNNCC 4 cut(s) 126, 385, 2048, 2049
BspMAI CTGCAG 1 cut(s) 1151
BspMI ACCTGC 2 cut(s) 423, 464
BspPI GGATC 2 cut(s) 672, 1431
BspT104I TTCGAA 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 1337
BsrDI GCAATG 3 cut(s) 427, 1086, 1132
BsrI ACTGG 4 cut(s) 160, 318, 1009, 1635
BssMI GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
BssSI CACGAG 2 cut(s) 1401, 2003
Bst2BI CACGAG 2 cut(s) 1401, 2003
Bst4CI ACNGT 4 cut(s) 270, 601, 1322, 2134
Bst6I CTCTTC 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 291
BstBI TTCGAA 1 cut(s) 882
BstC8I GCNNGC 3 cut(s) 1123, 1757, 1778
BstDEI CTNAG 5 cut(s) 229, 959, 1247, 1440, 1890
BstENI CCTNNNNNAGG 1 cut(s) 2162
BstF5I GGATG 8 cut(s) 16, 137, 763, 868, 1042, 1602, 1750, 2154
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 89, 397
BstKTI GATC 7 cut(s) 373, 667, 793, 1180, 1426, 1554, 1693
BstMAI GTCTC 2 cut(s) 1562, 1846
BstMBI GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
BstMWI GCNNNNNNNGC 5 cut(s) 54, 392, 401, 740, 1362
BstNSI RCATGY 1 cut(s) 1507
BstSCI CCNGG 3 cut(s) 183, 198, 379
BstSFI CTRYAG 2 cut(s) 1147, 1369
BstSNI TACGTA 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 2 cut(s) 1177, 1690
BstYI RGATCY 2 cut(s) 1177, 1690
BsuRI GGCC 6 cut(s) 404, 487, 641, 1455, 1610, 2009
BtsCI GGATG 8 cut(s) 16, 137, 763, 868, 1042, 1602, 1750, 2154
BtsI GCAGTG 3 cut(s) 240, 1156, 1351
BtsIMutI CAGTG 5 cut(s) 213, 240, 1156, 1351, 2130
BveI ACCTGC 2 cut(s) 423, 464
Cac8I GCNNGC 3 cut(s) 1123, 1757, 1778
CciI TCATGA 1 cut(s) 1477
CfoI GCGC 2 cut(s) 89, 397
Cfr13I GGNCC 3 cut(s) 124, 403, 2047
Csp6I GTAC 4 cut(s) 1428, 1623, 1645, 1967
CviAII CATG 7 cut(s) 1108, 1478, 1504, 1771, 1900, 2066, 2184
CviQI GTAC 4 cut(s) 1428, 1623, 1645, 1967
DdeI CTNAG 5 cut(s) 229, 959, 1247, 1440, 1890
DpnI GATC 7 cut(s) 372, 666, 792, 1179, 1425, 1553, 1692
DpnII GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 1187
Ecl136II GAGCTC 1 cut(s) 228
Eco105I TACGTA 1 cut(s) 291
Eco147I AGGCCT 3 cut(s) 487, 1455, 2009
Eco24I GRGCYC 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 124, 2047
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 1509
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 2162
EcoO109I RGGNCCY 2 cut(s) 124, 2047
EcoT22I ATGCAT 2 cut(s) 67, 1750
EcoT38I GRGCYC 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 1562
FaeI CATG 7 cut(s) 1111, 1481, 1507, 1774, 1903, 2069, 2187
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 2 cut(s) 167, 2033
FatI CATG 7 cut(s) 1107, 1477, 1503, 1770, 1899, 2065, 2183
FbaI TGATCA 1 cut(s) 1551
FblI GTMKAC 1 cut(s) 1071
FokI GGATG 8 cut(s) 3, 124, 770, 875, 1049, 1609, 1757, 2141
FriOI GRGCYC 1 cut(s) 230
FspBI CTAG 6 cut(s) 1184, 1212, 1286, 1463, 1509, 2058
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 2 cut(s) 88, 396
GsaI CCCAGC 2 cut(s) 48, 52
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 6 cut(s) 404, 487, 641, 1455, 1610, 2009
HapII CCGG 6 cut(s) 185, 199, 380, 860, 911, 1620
HhaI GCGC 2 cut(s) 89, 397
Hin1II CATG 7 cut(s) 1111, 1481, 1507, 1774, 1903, 2069, 2187
Hin6I GCGC 2 cut(s) 87, 395
HinP1I GCGC 2 cut(s) 87, 395
HindIII AAGCTT 1 cut(s) 176
HpaII CCGG 6 cut(s) 185, 199, 380, 860, 911, 1620
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 1072
Hpy188I TCNGA 7 cut(s) 142, 300, 1198, 1241, 1441, 1849, 1933
Hpy8I GTNNAC 1 cut(s) 1072
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 8 cut(s) 232, 498, 835, 1060, 1133, 1254, 1542, 1718
HpyCH4III ACNGT 4 cut(s) 270, 601, 1322, 2134
HpyCH4IV ACGT 3 cut(s) 144, 290, 1643
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 392, 401, 740, 1362
HpyF3I CTNAG 5 cut(s) 229, 959, 1247, 1440, 1890
HpySE526I ACGT 3 cut(s) 144, 290, 1643
Hsp92II CATG 7 cut(s) 1111, 1481, 1507, 1774, 1903, 2069, 2187
HspAI GCGC 2 cut(s) 87, 395
KflI GGGWCCC 1 cut(s) 2047
Ksp22I TGATCA 1 cut(s) 1551
Kzo9I GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
LmnI GCTCC 1 cut(s) 18
LweI GCATC 5 cut(s) 86, 961, 1587, 1735, 2044
MaeI CTAG 6 cut(s) 1184, 1212, 1286, 1463, 1509, 2058
MaeII ACGT 3 cut(s) 144, 290, 1643
MaeIII GTNAC 4 cut(s) 577, 1322, 1499, 2179
MalI GATC 7 cut(s) 372, 666, 792, 1179, 1425, 1553, 1692
MbiI CCGCTC 1 cut(s) 1337
MboI GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
MfeI CAATTG 1 cut(s) 1604
MflI RGATCY 2 cut(s) 1177, 1690
MhlI GDGCHC 3 cut(s) 230, 523, 1761
MlyI GAGTC 3 cut(s) 662, 1468, 2056
MmeI TCCRAC 3 cut(s) 165, 2013, 2094
Mph1103I ATGCAT 2 cut(s) 67, 1750
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 9 cut(s) 23, 194, 273, 437, 504, 728, 1859, 1974, 2027
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 6 cut(s) 185, 199, 380, 860, 911, 1620
MspR9I CCNGG 3 cut(s) 185, 200, 381
MunI CAATTG 1 cut(s) 1604
Mva1269I GAATGC 3 cut(s) 67, 1748, 1802
MwoI GCNNNNNNNGC 5 cut(s) 54, 392, 401, 740, 1362
NciI CCSGG 3 cut(s) 185, 200, 381
NdeII GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
NlaIII CATG 7 cut(s) 1111, 1481, 1507, 1774, 1903, 2069, 2187
NlaIV GGNNCC 4 cut(s) 126, 385, 2048, 2049
NmuCI GTSAC 2 cut(s) 577, 1322
NsbI TGCGCA 1 cut(s) 88
NsiI ATGCAT 2 cut(s) 67, 1750
NspI RCATGY 1 cut(s) 1507
NspV TTCGAA 1 cut(s) 882
PagI TCATGA 1 cut(s) 1477
PaqCI CACCTGC 1 cut(s) 464
PceI AGGCCT 3 cut(s) 487, 1455, 2009
PciI ACATGT 1 cut(s) 1503
PctI GAATGC 3 cut(s) 67, 1748, 1802
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 7 cut(s) 39, 588, 721, 914, 1783, 1844, 1980
PflMI CCANNNNNTGG 1 cut(s) 1413
PfoI TCCNGGA 1 cut(s) 183
PleI GAGTC 3 cut(s) 661, 1468, 2056
PpsI GAGTC 3 cut(s) 661, 1468, 2056
Ppu21I YACGTR 1 cut(s) 291
PpuMI RGGWCCY 2 cut(s) 124, 2047
PscI ACATGT 1 cut(s) 1503
PsiI TTATAA 1 cut(s) 1998
Psp124BI GAGCTC 1 cut(s) 230
Psp5II RGGWCCY 2 cut(s) 124, 2047
PspFI CCCAGC 2 cut(s) 44, 48
PspN4I GGNNCC 4 cut(s) 126, 385, 2048, 2049
PspPI GGNCC 3 cut(s) 124, 403, 2047
PspPPI RGGWCCY 2 cut(s) 124, 2047
PstI CTGCAG 1 cut(s) 1151
PsuI RGATCY 2 cut(s) 1177, 1690
PvuII CAGCTG 1 cut(s) 48
RsaI GTAC 4 cut(s) 1429, 1624, 1646, 1968
RsaNI GTAC 4 cut(s) 1428, 1623, 1645, 1967
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 9 cut(s) 23, 194, 273, 437, 504, 728, 1859, 1974, 2027
Sau3AI GATC 7 cut(s) 370, 664, 790, 1177, 1423, 1551, 1690
Sau96I GGNCC 3 cut(s) 124, 403, 2047
SchI GAGTC 3 cut(s) 662, 1468, 2056
ScrFI CCNGG 3 cut(s) 185, 200, 381
SduI GDGCHC 3 cut(s) 230, 523, 1761
SfaNI GCATC 5 cut(s) 86, 961, 1587, 1735, 2044
SfcI CTRYAG 2 cut(s) 1147, 1369
SfuI TTCGAA 1 cut(s) 882
SinI GGWCC 2 cut(s) 124, 2047
SnaBI TACGTA 1 cut(s) 291
SpeI ACTAGT 1 cut(s) 1183
SseBI AGGCCT 3 cut(s) 487, 1455, 2009
SsiI CCGC 5 cut(s) 282, 646, 743, 1172, 1335
SspI AATATT 2 cut(s) 134, 1231
SspMI CTAG 6 cut(s) 1184, 1212, 1286, 1463, 1509, 2058
SstI GAGCTC 1 cut(s) 230
StuI AGGCCT 3 cut(s) 487, 1455, 2009
StyD4I CCNGG 3 cut(s) 183, 198, 379
TaaI ACNGT 4 cut(s) 270, 601, 1322, 2134
TaiI ACGT 3 cut(s) 147, 293, 1646
TaqI TCGA 7 cut(s) 59, 99, 547, 882, 1527, 1786, 1824
TaqII GACCGA 1 cut(s) 765
TatI WGTACW 1 cut(s) 1966
TfiI GAWTC 7 cut(s) 39, 588, 721, 914, 1783, 1844, 1980
Tru1I TTAA 9 cut(s) 23, 194, 273, 437, 504, 728, 1859, 1974, 2027
Tru9I TTAA 9 cut(s) 23, 194, 273, 437, 504, 728, 1859, 1974, 2027
TscAI CASTG 5 cut(s) 220, 240, 1156, 1358, 2137
TseFI GTSAC 2 cut(s) 577, 1322
Tsp45I GTSAC 2 cut(s) 577, 1322
TspDTI ATGAA 9 cut(s) 126, 695, 795, 817, 906, 1097, 1382, 1513, 1599
TspGWI ACGGA 1 cut(s) 1992
TspRI CASTG 5 cut(s) 220, 240, 1156, 1358, 2137
Van91I CCANNNNNTGG 1 cut(s) 1413
VpaK11BI GGWCC 2 cut(s) 124, 2047
XagI CCTNNNNNAGG 1 cut(s) 2162
XapI RAATTY 6 cut(s) 102, 463, 901, 1085, 1160, 1948
XceI RCATGY 1 cut(s) 1507
XmiI GTMKAC 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 6 cut(s) 1184, 1212, 1286, 1463, 1509, 2058
Zsp2I ATGCAT 2 cut(s) 67, 1750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.