Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036031.1

Orthogroup ID

OG0008146

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 649

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036031.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

atgatagaaactgggttgacaccacctactaatttgtttgtggatgtaatgaatgtcttctgtacattgggaaagatagatgatgctttgaagttcttgaaagataagtatatccttgaaacttctgcctataatgtgttgcttgaaggtcgctgcaatactggtaaacttctcatcgcaaaagatctacttgtggaaatgtccgaaagaaacctagctgattgtaattcttggaatattctcatcagacagctttgtgagaatgcaaggattagggaagtgtttgaacttctaggtagaatggtggtatcatcttctattcctgattgtgctacatactcagctcttgttgttggcaactgcaaaatgagcaattacagaaaagctcttgatatatttcatcacattcgcaccaaatactgggttttggaccctagatcttactctgagcttgtcaaaggcctttgccttgtggaaatgactcgtgaggcggctgatgtgttctattacatgtctagaaatggatgcaccctccattcttcctccttcaatatgttgatcaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

188

Amino Acids

21.46

Weight (kDa)

7.53

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08430 FvH4_6g08430 FvH4_6g08430 FvH4_6g08430
malus_domestica	MD04G1187000.v1.1 MD12G1200400.v1.1
prunus_persica	Prupe.6G305500_v2.0.a1 Prupe.6G305500_v2.0.a1
pyrus_communis	pycom04g16510
rosa_chinensis	RchiOBHm_Chr3g0458391
rosa_laevigata	RLG00000025162
rosa_multiflora	Rmu_sc0036031.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421110
rosa_rugosa	Rorug03G0027100 Rorug03G0027200 Rorug03G0027300 Rorug03G0027400 Rorug03G0027400 Rorug03G0027500
rosa_samantha	Rh3AG087200 Rh3BG090000 Rh3CG090400 Rh3DG091000
rosa_wichuraiana	Rw3G007410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	1 cut(s)	491
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	6 cut(s)	91, 100, 119, 146, 287, 550
AluBI	AGCT	5 cut(s)	218, 253, 344, 386, 451
AluI	AGCT	5 cut(s)	218, 253, 344, 386, 451
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	558
BfaI	CTAG	4 cut(s)	215, 293, 435, 516
BglII	AGATCT	2 cut(s)	184, 437
BisI	GCNGC	2 cut(s)	154, 492
BlsI	GCNGC	2 cut(s)	155, 493
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	432
BmrI	ACTGGG	2 cut(s)	21, 430
BmsI	GCATC	2 cut(s)	73, 515
BmuI	ACTGGG	2 cut(s)	21, 430
BpiI	GAAGAC	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	3 cut(s)	16, 166, 425
BseGI	GGATG	2 cut(s)	49, 530
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	354, 438
BseNI	ACTGG	3 cut(s)	16, 166, 425
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	184, 437, 558
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	2 cut(s)	353, 439
BspLI	GGNNCC	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	16, 166, 425
BssMI	GATC	3 cut(s)	184, 437, 558
BssSI	CACGAG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	483
BstAUI	TGTACA	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	340, 447
BstF5I	GGATG	2 cut(s)	49, 530
BstKTI	GATC	3 cut(s)	187, 440, 561
BstMBI	GATC	3 cut(s)	184, 437, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	184, 437
BstYI	RGATCY	2 cut(s)	184, 437
BsuRI	GGCC	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	49, 530
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	1 cut(s)	511
CviJI	RGCY	7 cut(s)	218, 253, 344, 386, 451, 462, 494
CviKI_1	RGCY	7 cut(s)	218, 253, 344, 386, 451, 462, 494
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	340, 447
DpnI	GATC	3 cut(s)	186, 439, 560
DpnII	GATC	3 cut(s)	184, 437, 558
Eco147I	AGGCCT	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	430
FaeI	CATG	1 cut(s)	514
FaiI	YATR	6 cut(s)	111, 132, 337, 395, 512, 554
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	2 cut(s)	154, 492
FokI	GGATG	2 cut(s)	56, 537
Fsp4HI	GCNGC	2 cut(s)	154, 492
FspBI	CTAG	4 cut(s)	215, 293, 435, 516
GluI	GCNGC	2 cut(s)	154, 492
HaeIII	GGCC	1 cut(s)	462
Hin1II	CATG	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	18, 167
Hpy188I	TCNGA	3 cut(s)	205, 248, 448
Hpy188III	TCNNGA	5 cut(s)	97, 323, 389, 485, 516
Hpy8I	GTNNAC	2 cut(s)	18, 167
HpyAV	CCTTC	2 cut(s)	140, 556
HpyCH4V	TGCA	4 cut(s)	156, 266, 363, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	2 cut(s)	340, 447
Hsp92II	CATG	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	184, 437, 558
LpnPI	CCDG	3 cut(s)	147, 336, 406
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	73, 515
MaeI	CTAG	4 cut(s)	215, 293, 435, 516
MalI	GATC	3 cut(s)	186, 439, 560
MboI	GATC	3 cut(s)	184, 437, 558
MboII	GAAGA	3 cut(s)	49, 306, 531
MflI	RGATCY	2 cut(s)	184, 437
MluCI	AATT	3 cut(s)	31, 226, 373
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	3 cut(s)	481, 542, 553
MroXI	GAANNNNTTC	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	3 cut(s)	184, 437, 558
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	1 cut(s)	432
NspI	RCATGY	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	462
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	155, 493
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	184, 437
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SatI	GCNGC	2 cut(s)	154, 492
Sau3AI	GATC	3 cut(s)	184, 437, 558
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	475
SetI	ASST	9 cut(s)	28, 151, 216, 220, 255, 298, 346, 388, 453
SfaNI	GCATC	2 cut(s)	73, 515
SinI	GGWCC	1 cut(s)	430
Sse9I	AATT	3 cut(s)	31, 226, 373
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	491
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	4 cut(s)	215, 293, 435, 516
StuI	AGGCCT	1 cut(s)	462
TasI	AATT	3 cut(s)	31, 226, 373
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	65, 389
Van91I	CCANNNNNTGG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	430
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	4 cut(s)	215, 293, 435, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.