FvH4_6g09120

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015648
Physical Location & Seq
Reverse (-)
5402755 .. 5404058
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09120.t1

Sequence Viewer

Length: 699 bp
ATGTCAAAGATACATCCAGCTGCAGAAAATAGATACCAATATCAAAATCGTGGAGTCCTTCACCATGATCTTCAGGTGGAAGATGTTCATGATGTAAACCCATCTGTGCTCACTGTGTGGAAGAGATCTAGCATGAGCTTCCAGGGAACTGATGGATTTACTGTCTTCGATCACCGAGGAGTTTTGACTTTCCGAGTCGACAACTATTCCAGGAAGAACTGCGGCGTCCGGAAAGGACTCGTCCTCATGGACGGAGCTGGAAGTGCCTTGCTCACTCTCAAACCCCAGGTTTTGAGTATGCAAGACCAATGGAATGCATATCGAGGAGACTATGGATGTGCAAAGAGTTCTAAGTCCAGTAGAGTATTCACCATGAAAAACACTGGGTCTGGTCTTTTTAGCCGCAGCAATAAAACTGAAGCAACAGCCGAGGTGTTCATGGGATCCGAAACTACGAGCCCTTCACCGGATTTCAGAATCGAGGGTTGTTTTCAGAGGCGAAACTGCAAGATCAGGAGCAGCAGTGGACAACTGGTGGCCAATGTAGCTAGGAAAAGAGTGAGCAACACAGTCATGCTTGGGGAGGATGTGTTCAGCTTGGTGGTACAACCAGGGTTCGATCTGGATCTTATCATGGCGTTTGTAGTAGTCTTGGATCGCATTTGTGGGAAGCCATTAACGCCAATTTTATGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

233

Amino Acids

25.77

Weight (kDa)

9.32

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 36 - 219 6.5e-34 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 2 cut(s) 222, 403
AclWI GGATC 4 cut(s) 438, 451, 633, 663
AcoI YGGCCR 1 cut(s) 537
AcuI CTGAAG 2 cut(s) 56, 438
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 117
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 1 cut(s) 466
AjnI CCWGG 4 cut(s) 141, 209, 285, 610
AjuI GAANNNNNNNTTGG 1 cut(s) 676
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 5 cut(s) 20, 138, 257, 548, 597
AluI AGCT 5 cut(s) 20, 138, 257, 548, 597
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 4 cut(s) 438, 451, 633, 663
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 3 cut(s) 20, 405, 519
Asp700I GAANNNNTTC 1 cut(s) 84
AsuHPI GGTGA 4 cut(s) 53, 164, 361, 456
BalI TGGCCA 1 cut(s) 539
BamHI GGATCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 7, 417, 531
BccI CCATC 2 cut(s) 109, 146
BciT130I CCWGG 4 cut(s) 143, 211, 287, 612
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 2 cut(s) 129, 549
BfmI CTRYAG 1 cut(s) 21
BglII AGATCT 1 cut(s) 125
BisI GCNGC 5 cut(s) 21, 223, 403, 406, 520
BlsI GCNGC 5 cut(s) 22, 224, 404, 407, 521
Bme1390I CCNGG 4 cut(s) 143, 211, 287, 612
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 4 cut(s) 143, 211, 287, 612
BmrI ACTGGG 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 142, 175, 285, 429, 611
BsaWI WCCGGW 2 cut(s) 228, 466
BsaXI ACNNNNNCTCC 4 cut(s) 508, 538, 575, 605
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 3 cut(s) 357, 388, 537
Bse8I GATNNNNATC 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 4 cut(s) 143, 211, 287, 612
BseDI CCNNGG 5 cut(s) 142, 175, 285, 429, 611
BseGI GGATG 3 cut(s) 13, 341, 592
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 1 cut(s) 466
BseNI ACTGG 3 cut(s) 357, 388, 537
BseRI GAGGAG 2 cut(s) 192, 339
BseXI GCAGC 3 cut(s) 7, 417, 531
BshFI GGCC 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 229, 467
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 111, 461
Bsp13I TCCGGA 1 cut(s) 228
Bsp143I GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
BspACI CCGC 2 cut(s) 222, 403
BspANI GGCC 1 cut(s) 539
BspEI TCCGGA 1 cut(s) 228
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 4 cut(s) 438, 451, 633, 663
BsrI ACTGG 3 cut(s) 357, 388, 537
BssECI CCNNGG 5 cut(s) 142, 175, 285, 429, 611
BssMI GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 4 cut(s) 143, 211, 287, 612
Bst4CI ACNGT 3 cut(s) 115, 163, 571
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 13, 341, 592
BstKTI GATC 8 cut(s) 70, 128, 172, 446, 513, 622, 628, 658
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
BstMWI GCNNNNNNNGC 3 cut(s) 263, 545, 679
BstNI CCWGG 4 cut(s) 143, 211, 287, 612
BstSCI CCNGG 4 cut(s) 141, 209, 285, 610
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 7, 417, 531
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 3 cut(s) 125, 443, 625
BstYI RGATCY 3 cut(s) 125, 443, 625
BsuRI GGCC 1 cut(s) 539
BtsCI GGATG 3 cut(s) 13, 341, 592
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 3 cut(s) 111, 381, 529
CciI TCATGA 1 cut(s) 88
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 605
CviAII CATG 8 cut(s) 65, 89, 133, 247, 373, 439, 574, 634
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 1 cut(s) 351
DpnI GATC 8 cut(s) 69, 127, 171, 445, 512, 621, 627, 657
DpnII GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
DraIII CACNNNGTG 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 461
Eco57I CTGAAG 2 cut(s) 56, 438
EcoRII CCWGG 4 cut(s) 141, 209, 285, 610
EcoT22I ATGCAT 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 461
FaeI CATG 8 cut(s) 68, 92, 136, 250, 376, 442, 577, 637
FatI CATG 8 cut(s) 64, 88, 132, 246, 372, 438, 573, 633
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 21, 223, 403, 406, 520
FokI GGATG 2 cut(s) 348, 599
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 5 cut(s) 21, 223, 403, 406, 520
FspBI CTAG 2 cut(s) 129, 549
GluI GCNGC 5 cut(s) 21, 223, 403, 406, 520
HaeIII GGCC 1 cut(s) 539
HapII CCGG 2 cut(s) 229, 467
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 8 cut(s) 68, 92, 136, 250, 376, 442, 577, 637
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 4 cut(s) 54, 195, 237, 477
HpaII CCGG 2 cut(s) 229, 467
HphI GGTGA 4 cut(s) 53, 164, 361, 456
Hpy166II GTNNAC 3 cut(s) 97, 199, 527
Hpy188I TCNGA 4 cut(s) 194, 448, 476, 495
Hpy188III TCNNGA 4 cut(s) 89, 229, 514, 623
Hpy8I GTNNAC 3 cut(s) 97, 199, 527
HpyAV CCTTC 2 cut(s) 68, 471
HpyCH4III ACNGT 3 cut(s) 115, 163, 571
HpyCH4V TGCA 5 cut(s) 23, 301, 317, 341, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 545, 679
HpyF3I CTNAG 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 8 cut(s) 68, 92, 136, 250, 376, 442, 577, 637
Kpn2I TCCGGA 1 cut(s) 228
Kzo9I GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
LmnI GCTCC 2 cut(s) 254, 516
Lsp1109I GCAGC 3 cut(s) 7, 417, 531
MaeI CTAG 2 cut(s) 129, 549
MalI GATC 8 cut(s) 69, 127, 171, 445, 512, 621, 627, 657
MboI GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
MboII GAAGA 5 cut(s) 62, 92, 133, 157, 226
MflI RGATCY 3 cut(s) 125, 443, 625
MhlI GDGCHC 2 cut(s) 111, 461
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 3 cut(s) 63, 204, 231
MnlI CCTC 7 cut(s) 170, 254, 317, 424, 475, 489, 577
Mox20I TGGCCA 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 319
MroI TCCGGA 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 84
MscI TGGCCA 1 cut(s) 539
MseI TTAA 2 cut(s) 677, 697
MslI CAYNNNNRTG 1 cut(s) 572
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 229, 467
MspR9I CCNGG 4 cut(s) 143, 211, 287, 612
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 4 cut(s) 143, 211, 287, 612
MwoI GCNNNNNNNGC 3 cut(s) 263, 545, 679
NdeII GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
NlaIII CATG 8 cut(s) 68, 92, 136, 250, 376, 442, 577, 637
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 319
PagI TCATGA 1 cut(s) 88
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 477
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 5 cut(s) 22, 224, 404, 407, 521
PleI GAGTC 3 cut(s) 62, 203, 231
PpsI GAGTC 3 cut(s) 62, 203, 231
Psp6I CCWGG 4 cut(s) 141, 209, 285, 610
PspGI CCWGG 4 cut(s) 141, 209, 285, 610
PspN4I GGNNCC 1 cut(s) 445
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 3 cut(s) 125, 443, 625
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
RseI CAYNNNNRTG 1 cut(s) 572
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 677, 697
SatI GCNGC 5 cut(s) 21, 223, 403, 406, 520
Sau3AI GATC 8 cut(s) 67, 125, 169, 443, 510, 619, 625, 655
SchI GAGTC 3 cut(s) 63, 204, 231
ScrFI CCNGG 4 cut(s) 143, 211, 287, 612
SduI GDGCHC 2 cut(s) 111, 461
SetI ASST 8 cut(s) 22, 78, 140, 259, 291, 435, 550, 599
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 572
Sse9I AATT 1 cut(s) 684
SsiI CCGC 2 cut(s) 222, 403
SspMI CTAG 2 cut(s) 129, 549
StyD4I CCNGG 4 cut(s) 141, 209, 285, 610
TaaI ACNGT 3 cut(s) 115, 163, 571
TaqI TCGA 5 cut(s) 168, 198, 322, 480, 618
TasI AATT 1 cut(s) 684
TauI GCSGC 2 cut(s) 225, 405
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 2 cut(s) 677, 697
Tru9I TTAA 2 cut(s) 677, 697
TscAI CASTG 3 cut(s) 118, 388, 529
TseI GCWGC 3 cut(s) 20, 405, 519
TspDTI ATGAA 3 cut(s) 77, 389, 427
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 3 cut(s) 118, 388, 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 2 cut(s) 129, 549
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.