Rorug03G0035400

LURP-one-related 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
2815358 .. 2816377
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0035400.1

Sequence Viewer

Length: 918 bp
ATGGCGGAAACCACCACCGCACGGCCGCTCAAAATCATCGCCGGCGCCGACTCCTTCGGCTGTTCACTCAAAGACGCCCTGGTCTCCCACCTCCGCTCCCTCAACATCGACGTCGAGGACCTCGGCACCTCCTCCTACTACTCCATCGCCGCCGACGTCGGCCGCCGCGTCTCCTCCTCCGCCGCCGACACCGAAACCCGCGGACTCGTCGCCTGCGGCACCGGCGTGGGCGTCGCGATCTTCGCCAACAAGTTCCCCGGAGTCTTCGCCGCCACGTGTCTCTCCCCCTCCGACGCCCTCAACGCCCGGTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCAATTCCACTGCGCCGGAATCCGCGATTGAGATCCTCGACACGTGGCTCAACACTCCCTTCAAGGCGCCGTGTCCGGCGTCGGAGTCGAAACCTTGGCCGGAAGAGATATCTTCTTTTCTTGATAACTCAATGAATGACATGCCACAAATTGGAGCTGATTCTGATTTGAAGGAGAGTTCTTGCTCTATCTGCTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTCCGGGTGGATCAATGAAGATATTGAGGGAGAGTCCCACATCGGCCATAGTTAGGTTTAAGGCCGGGAGCGTGGAGCCGGCGCACCACCACACTTTCGGGCACGACTTGGTCGTGATGGAGGGGAAGAAGAGTGTGTGGAATTTAACTAAGAAGGAGAGATTTGATCTAGTTGTTGGGGATTACTTGTTTACTCCAGCTGGGGATGTGCATAGAGTCAAGTACTATGAAGACACCGAGTTCTTTATCAAGTGGGATGGGAAATGGGATATGTTCTTCGATGAAGATCTCGAGGCTGCGAAGAAGGCTGTTGATCAAGCACTGGAGAATGAGGGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

305

Amino Acids

33.03

Weight (kDa)

5.0

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 12 - 136 3.3e-30 Ribose/Galactose Isomerase
Cupin_7 PF12973 191 - 274 1.3e-06 ChrR Cupin-like domain
Cupin_2 PF07883 209 - 269 6.6e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015648)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 2 cut(s) 114, 159
AccB1I GGYRCC 4 cut(s) 44, 125, 218, 409
AccB7I CCANNNNNTGG 1 cut(s) 494
AccBSI CCGCTC 2 cut(s) 28, 96
AccII CGCG 4 cut(s) 168, 201, 236, 368
AclWI GGATC 2 cut(s) 370, 595
AcoI YGGCCR 4 cut(s) 23, 160, 440, 621
AcsI RAATTY 2 cut(s) 556, 718
AcvI CACGTG 2 cut(s) 276, 387
AcyI GRCGYC 8 cut(s) 45, 75, 111, 156, 231, 294, 410, 422
AfaI GTAC 1 cut(s) 800
AfiI CCNNNNNNNGG 3 cut(s) 21, 494, 630
AflIII ACRYGT 2 cut(s) 275, 384
AgsI TTSAA 3 cut(s) 406, 514, 562
AjnI CCWGG 1 cut(s) 78
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 2 cut(s) 500, 776
AluI AGCT 2 cut(s) 500, 776
Alw26I GTCTC 4 cut(s) 88, 175, 284, 343
AlwI GGATC 2 cut(s) 370, 595
Ama87I CYCGRG 1 cut(s) 866
AoxI GGCC 5 cut(s) 23, 160, 440, 621, 639
ApeKI GCWGC 1 cut(s) 872
ApoI RAATTY 2 cut(s) 556, 718
AspLEI GCGC 4 cut(s) 47, 358, 412, 661
AspS9I GGNCC 2 cut(s) 118, 309
AsuC2I CCSGG 4 cut(s) 258, 307, 582, 643
AsuHPI GGTGA 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 866
AvaII GGWCC 2 cut(s) 118, 309
BaeGI GKGCMC 1 cut(s) 681
BanI GGYRCC 4 cut(s) 44, 125, 218, 409
BbrPI CACGTG 2 cut(s) 276, 387
BbsI GAAGAC 2 cut(s) 256, 813
BbvI GCAGC 1 cut(s) 859
BccI CCATC 4 cut(s) 152, 320, 688, 827
BceAI ACGGC 3 cut(s) 38, 320, 397
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 4 cut(s) 258, 307, 582, 643
BcoDI GTCTC 4 cut(s) 88, 175, 284, 343
BfaI CTAG 1 cut(s) 746
BfoI RGCGCY 2 cut(s) 48, 413
BglII AGATCT 1 cut(s) 862
BisI GCNGC 8 cut(s) 26, 150, 163, 166, 183, 217, 270, 873
BlsI GCNGC 8 cut(s) 27, 151, 164, 167, 184, 218, 271, 874
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 5 cut(s) 80, 258, 307, 582, 643
Bme18I GGWCC 2 cut(s) 118, 309
BmeT110I CYCGRG 1 cut(s) 866
BmgT120I GGNCC 2 cut(s) 118, 309
BmiI GGNNCC 5 cut(s) 46, 127, 220, 411, 654
BmrFI CCNGG 5 cut(s) 80, 258, 307, 582, 643
BpiI GAAGAC 2 cut(s) 256, 813
BpmI CTGGAG 1 cut(s) 756
BpuMI CCSGG 4 cut(s) 258, 307, 582, 643
BsaAI YACGTR 2 cut(s) 276, 387
BsaBI GATNNNNATC 2 cut(s) 374, 861
BsaHI GRCGYC 8 cut(s) 45, 75, 111, 156, 231, 294, 410, 422
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 5 cut(s) 78, 121, 199, 256, 437
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 494, 630
Bse118I RCCGGY 3 cut(s) 41, 221, 655
Bse1I ACTGG 1 cut(s) 903
Bse8I GATNNNNATC 2 cut(s) 374, 861
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 5 cut(s) 78, 121, 199, 256, 437
BseGI GGATG 2 cut(s) 787, 838
BseJI GATNNNNATC 2 cut(s) 374, 861
BseLI CCNNNNNNNGG 3 cut(s) 21, 494, 630
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 3 cut(s) 121, 163, 166
BseSI GKGCMC 1 cut(s) 681
BseX3I CGGCCG 2 cut(s) 23, 160
BseXI GCAGC 1 cut(s) 859
BseYI CCCAGC 1 cut(s) 776
Bsh1236I CGCG 4 cut(s) 168, 201, 236, 368
Bsh1285I CGRYCG 2 cut(s) 26, 163
BshFI GGCC 5 cut(s) 25, 162, 442, 623, 641
BshNI GGYRCC 4 cut(s) 44, 125, 218, 409
BsiEI CGRYCG 2 cut(s) 26, 163
BsiHKCI CYCGRG 1 cut(s) 866
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 3 cut(s) 21, 494, 630
BsmAI GTCTC 4 cut(s) 88, 175, 284, 343
BsmBI CGTCTC 2 cut(s) 175, 343
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 5 cut(s) 25, 162, 442, 623, 641
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 681
Bsp143I GATC 6 cut(s) 237, 375, 587, 742, 862, 889
Bsp68I TCGCGA 1 cut(s) 236
BspANI GGCC 5 cut(s) 25, 162, 442, 623, 641
BspFNI CGCG 4 cut(s) 168, 201, 236, 368
BspLI GGNNCC 5 cut(s) 46, 127, 220, 411, 654
BspPI GGATC 2 cut(s) 370, 595
BspT107I GGYRCC 4 cut(s) 44, 125, 218, 409
BspTNI GGTCTC 1 cut(s) 88
BsrBI CCGCTC 2 cut(s) 28, 96
BsrFI RCCGGY 3 cut(s) 41, 221, 655
BsrI ACTGG 1 cut(s) 903
BssAI RCCGGY 3 cut(s) 41, 221, 655
BssECI CCNNGG 5 cut(s) 78, 121, 199, 256, 437
BssMI GATC 6 cut(s) 237, 375, 587, 742, 862, 889
BssNI GRCGYC 8 cut(s) 45, 75, 111, 156, 231, 294, 410, 422
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 2 cut(s) 441, 701
BstACI GRCGYC 8 cut(s) 45, 75, 111, 156, 231, 294, 410, 422
BstBAI YACGTR 2 cut(s) 276, 387
BstC8I GCNNGC 3 cut(s) 43, 214, 657
BstDEI CTNAG 1 cut(s) 726
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 787, 838
BstFNI CGCG 4 cut(s) 168, 201, 236, 368
BstH2I RGCGCY 2 cut(s) 48, 413
BstHHI GCGC 4 cut(s) 47, 358, 412, 661
BstKTI GATC 6 cut(s) 240, 378, 590, 745, 865, 892
BstMAI GTCTC 4 cut(s) 88, 175, 284, 343
BstMBI GATC 6 cut(s) 237, 375, 587, 742, 862, 889
BstMCI CGRYCG 2 cut(s) 26, 163
BstMWI GCNNNNNNNGC 5 cut(s) 222, 242, 302, 534, 881
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 5 cut(s) 78, 256, 305, 580, 641
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 4 cut(s) 168, 201, 236, 368
BstV1I GCAGC 1 cut(s) 859
BstV2I GAAGAC 2 cut(s) 256, 813
BstX2I RGATCY 2 cut(s) 375, 862
BstYI RGATCY 2 cut(s) 375, 862
BstZI CGGCCG 2 cut(s) 23, 160
BsuRI GGCC 5 cut(s) 25, 162, 442, 623, 641
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 2 cut(s) 22, 130
BtsCI GGATG 2 cut(s) 787, 838
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 896
BtuMI TCGCGA 1 cut(s) 236
Cac8I GCNNGC 3 cut(s) 43, 214, 657
CfoI GCGC 4 cut(s) 47, 358, 412, 661
Cfr10I RCCGGY 3 cut(s) 41, 221, 655
Cfr13I GGNCC 2 cut(s) 118, 309
Cfr42I CCGCGG 1 cut(s) 202
CseI GACGC 5 cut(s) 83, 157, 220, 302, 411
Csp6I GTAC 1 cut(s) 799
CviAII CATG 1 cut(s) 484
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 1 cut(s) 726
DinI GGCGCC 2 cut(s) 46, 411
DpnI GATC 6 cut(s) 239, 377, 589, 744, 864, 891
DpnII GATC 6 cut(s) 237, 375, 587, 742, 862, 889
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 4 cut(s) 23, 160, 440, 621
EagI CGGCCG 2 cut(s) 23, 160
Eam1104I CTCTTC 2 cut(s) 441, 701
EarI CTCTTC 2 cut(s) 441, 701
EciI GGCGGA 2 cut(s) 20, 169
EclXI CGGCCG 2 cut(s) 23, 160
Eco130I CCWWGG 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 118, 309
Eco52I CGGCCG 2 cut(s) 23, 160
Eco72I CACGTG 2 cut(s) 276, 387
Eco88I CYCGRG 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 78
EcoRV GATATC 1 cut(s) 453
EcoT14I CCWWGG 1 cut(s) 437
EgeI GGCGCC 2 cut(s) 46, 411
EheI GGCGCC 2 cut(s) 46, 411
ErhI CCWWGG 1 cut(s) 437
Esp3I CGTCTC 2 cut(s) 175, 343
FaeI CATG 1 cut(s) 487
FaiI YATR 6 cut(s) 485, 575, 626, 789, 804, 848
FaqI GGGAC 1 cut(s) 597
FatI CATG 1 cut(s) 483
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 8 cut(s) 26, 150, 163, 166, 183, 217, 270, 873
FokI GGATG 2 cut(s) 794, 845
Fsp4HI GCNGC 8 cut(s) 26, 150, 163, 166, 183, 217, 270, 873
FspBI CTAG 1 cut(s) 746
GlaI GCGC 4 cut(s) 46, 357, 411, 660
GluI GCNGC 8 cut(s) 26, 150, 163, 166, 183, 217, 270, 873
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 1 cut(s) 756
HaeII RGCGCY 2 cut(s) 48, 413
HaeIII GGCC 5 cut(s) 25, 162, 442, 623, 641
HgaI GACGC 5 cut(s) 83, 157, 220, 302, 411
HhaI GCGC 4 cut(s) 47, 358, 412, 661
Hin1I GRCGYC 8 cut(s) 45, 75, 111, 156, 231, 294, 410, 422
Hin1II CATG 1 cut(s) 487
Hin6I GCGC 4 cut(s) 45, 356, 410, 659
HinP1I GCGC 4 cut(s) 45, 356, 410, 659
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 65, 768
Hpy188I TCNGA 5 cut(s) 292, 427, 508, 555, 567
Hpy188III TCNNGA 4 cut(s) 235, 464, 691, 866
Hpy8I GTNNAC 2 cut(s) 65, 768
Hpy99I CGWCG 8 cut(s) 113, 116, 158, 161, 212, 236, 296, 427
HpyAV CCTTC 5 cut(s) 64, 412, 508, 724, 874
HpyCH4IV ACGT 5 cut(s) 111, 156, 275, 327, 386
HpyCH4V TGCA 1 cut(s) 787
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 242, 302, 534, 881
HpyF3I CTNAG 1 cut(s) 726
HpySE526I ACGT 5 cut(s) 111, 156, 275, 327, 386
Hsp92I GRCGYC 8 cut(s) 45, 75, 111, 156, 231, 294, 410, 422
Hsp92II CATG 1 cut(s) 487
HspAI GCGC 4 cut(s) 45, 356, 410, 659
KasI GGCGCC 2 cut(s) 44, 409
KroI GCCGGC 2 cut(s) 41, 655
KroNI GCCGGC 2 cut(s) 43, 657
Ksp22I TGATCA 1 cut(s) 889
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 6 cut(s) 237, 375, 587, 742, 862, 889
LmnI GCTCC 4 cut(s) 101, 497, 645, 652
Lsp1109I GCAGC 1 cut(s) 859
MaeI CTAG 1 cut(s) 746
MaeII ACGT 5 cut(s) 111, 156, 275, 327, 386
MalI GATC 6 cut(s) 239, 377, 589, 744, 864, 891
MbiI CCGCTC 2 cut(s) 28, 96
MboI GATC 6 cut(s) 237, 375, 587, 742, 862, 889
MflI RGATCY 2 cut(s) 375, 862
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 5 cut(s) 346, 492, 556, 576, 718
Mly113I GGCGCC 2 cut(s) 45, 410
MlyI GAGTC 6 cut(s) 44, 198, 270, 437, 619, 801
MmeI TCCRAC 3 cut(s) 315, 348, 405
MreI CGCCGGCG 1 cut(s) 41
MroNI GCCGGC 2 cut(s) 41, 655
MseI TTAA 2 cut(s) 636, 722
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 2 cut(s) 201, 776
MspR9I CCNGG 5 cut(s) 80, 258, 307, 582, 643
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 4 cut(s) 168, 201, 236, 368
MwoI GCNNNNNNNGC 5 cut(s) 222, 242, 302, 534, 881
NaeI GCCGGC 2 cut(s) 43, 657
NarI GGCGCC 2 cut(s) 45, 410
NciI CCSGG 4 cut(s) 258, 307, 582, 643
NdeII GATC 6 cut(s) 237, 375, 587, 742, 862, 889
NgoMIV GCCGGC 2 cut(s) 41, 655
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 5 cut(s) 46, 127, 220, 411, 654
NmeAIII GCCGAG 1 cut(s) 102
NruI TCGCGA 1 cut(s) 236
NspI RCATGY 1 cut(s) 487
OliI CACNNNNGTG 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 866
PcsI WCGNNNNNNNCGW 5 cut(s) 45, 153, 165, 333, 687
PdiI GCCGGC 2 cut(s) 43, 657
PfeI GAWTC 4 cut(s) 362, 503, 550, 562
PflFI GACNNNGTC 1 cut(s) 686
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 8 cut(s) 27, 151, 164, 167, 184, 218, 271, 874
PleI GAGTC 6 cut(s) 44, 198, 269, 436, 618, 800
PluTI GGCGCC 2 cut(s) 48, 413
PmaCI CACGTG 2 cut(s) 276, 387
PmlI CACGTG 2 cut(s) 276, 387
PpsI GAGTC 6 cut(s) 44, 198, 269, 436, 618, 800
Ppu21I YACGTR 2 cut(s) 276, 387
PpuMI RGGWCCY 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 78
PspCI CACGTG 2 cut(s) 276, 387
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 5 cut(s) 46, 127, 220, 411, 654
PspPI GGNCC 2 cut(s) 118, 309
PspPPI RGGWCCY 1 cut(s) 118
PsuI RGATCY 2 cut(s) 375, 862
PsyI GACNNNGTC 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 776
RruI TCGCGA 1 cut(s) 236
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 224
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 2 cut(s) 636, 722
SatI GCNGC 8 cut(s) 26, 150, 163, 166, 183, 217, 270, 873
Sau3AI GATC 6 cut(s) 237, 375, 587, 742, 862, 889
Sau96I GGNCC 2 cut(s) 118, 309
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 6 cut(s) 44, 198, 270, 437, 619, 801
ScrFI CCNGG 5 cut(s) 80, 258, 307, 582, 643
SduI GDGCHC 1 cut(s) 681
SfoI GGCGCC 2 cut(s) 46, 411
Sfr274I CTCGAG 1 cut(s) 866
Sfr303I CCGCGG 1 cut(s) 202
SgrAI CRCCGGYG 2 cut(s) 41, 221
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 2 cut(s) 118, 309
SlaI CTCGAG 1 cut(s) 866
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 5 cut(s) 346, 492, 556, 576, 718
SspDI GGCGCC 2 cut(s) 44, 409
SspMI CTAG 1 cut(s) 746
StyD4I CCNGG 5 cut(s) 78, 256, 305, 580, 641
StyI CCWWGG 1 cut(s) 437
TaiI ACGT 5 cut(s) 114, 159, 278, 330, 389
TaqI TCGA 6 cut(s) 108, 114, 381, 431, 855, 867
TasI AATT 5 cut(s) 346, 492, 556, 576, 718
TatI WGTACW 1 cut(s) 798
TauI GCSGC 7 cut(s) 28, 152, 165, 168, 185, 219, 272
TfiI GAWTC 4 cut(s) 362, 503, 550, 562
Tru1I TTAA 2 cut(s) 636, 722
Tru9I TTAA 2 cut(s) 636, 722
TscAI CASTG 2 cut(s) 358, 903
TseI GCWGC 1 cut(s) 872
TspDTI ATGAA 4 cut(s) 491, 608, 819, 873
TspRI CASTG 2 cut(s) 358, 903
Tth111I GACNNNGTC 1 cut(s) 686
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 118, 309
XapI RAATTY 2 cut(s) 556, 718
XceI RCATGY 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 866
XspI CTAG 1 cut(s) 746
ZraI GACGTC 2 cut(s) 112, 157
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.