pycom04g15980

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015648
Physical Location & Seq
Forward (+)
18710831 .. 18711567
737 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15980.1

Sequence Viewer

Length: 546 bp
ATGGATTTACAGTGTTTGATCGATCGTGGAATTCTAACTTTTCGAGTAGACAATTATTCGAGGAAGAACTGTTGCGTTAGAGGAGGACTTGTACTCATGGATGGAGCTGGAAGAGCCTTGCTGACCCTCAAACCCCAGATGTTGAGCTTGCAAGATCAATGGAATGCATATAGAGGAGAAGATGGATGTGGAAAGAACCCTAAATCCAGCAGAGTGTTCACCATGAAAAGTGGATCAAATCTTTTTGGCAGCAGAAATAAAAGTGCACCAGCTGAGGTGTTCATGGGAGGATCCACGAGCTCGAATAGTGCACCAGATTTCATAGTTGAAGGTTGTTTTGGGAGAAGAAACTGCAAAATTCTAGATTGCAGTGGAGAACTTGTGGCCACTGTGTCCAGAAAACGAGTAAATAATTCAGTCTTGCTAGAAAACGACGTGTTCAGCTTGGTGGTGCAACCTGGATTTGATCTTGAATTAATTATGGGTTTTGTAATTATTTTGGATCGGATTTGTGGGAAGACATTTACCCCGATCTTGTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

182

Amino Acids

19.8

Weight (kDa)

8.78

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 10 - 168 6.3e-27 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AclWI GGATC 4 cut(s) 241, 285, 298, 510
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 2 cut(s) 30, 357
AfaI GTAC 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 329, 473
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 5 cut(s) 107, 147, 272, 300, 444
AluI AGCT 5 cut(s) 107, 147, 272, 300, 444
Alw21I GWGCWC 3 cut(s) 268, 302, 313
Alw44I GTGCAC 2 cut(s) 264, 309
AlwI GGATC 4 cut(s) 241, 285, 298, 510
AoxI GGCC 1 cut(s) 384
ApaLI GTGCAC 2 cut(s) 264, 309
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 30, 357
AseI ATTAAT 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 211
BaeGI GKGCMC 2 cut(s) 268, 313
BalI TGGCCA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 302
BauI CACGAG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 3 cut(s) 268, 302, 313
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 95, 176
BciT130I CCWGG 1 cut(s) 459
BfaI CTAG 2 cut(s) 362, 425
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 366, 396
BseBI CCWGG 1 cut(s) 459
BseCI ATCGAT 1 cut(s) 21
BseGI GGATG 2 cut(s) 106, 191
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 2 cut(s) 96, 189
BseSI GKGCMC 2 cut(s) 268, 313
BseXI GCAGC 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 386
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 3 cut(s) 268, 302, 313
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 268, 302, 313
Bsp143I GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 4 cut(s) 241, 285, 298, 510
BspQI GCTCTTC 1 cut(s) 106
BssMI GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
BssSI CACGAG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 3 cut(s) 12, 71, 391
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 106, 191
BstKTI GATC 8 cut(s) 21, 25, 157, 236, 293, 469, 505, 534
BstMBI GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 457
BstSLI GKGCMC 2 cut(s) 268, 313
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 386
BsuTUI ATCGAT 1 cut(s) 21
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 106, 191
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 3 cut(s) 17, 376, 387
Cac8I GCNNGC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 1 cut(s) 92
CviAII CATG 3 cut(s) 97, 223, 283
CviJI RGCY 7 cut(s) 107, 116, 147, 272, 300, 386, 444
CviKI_1 RGCY 7 cut(s) 107, 116, 147, 272, 300, 386, 444
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 273
DpnI GATC 8 cut(s) 20, 24, 156, 235, 292, 468, 504, 533
DpnII GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 3 cut(s) 100, 226, 286
FaiI YATR 7 cut(s) 98, 169, 171, 224, 284, 323, 482
FatI CATG 3 cut(s) 96, 222, 282
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 2 cut(s) 113, 198
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 2 cut(s) 362, 425
GluI GCNGC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 386
Hin1II CATG 3 cut(s) 100, 226, 286
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 4 cut(s) 49, 219, 266, 311
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 4 cut(s) 362, 396, 470, 543
Hpy8I GTNNAC 4 cut(s) 49, 219, 266, 311
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 3 cut(s) 12, 71, 391
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 7 cut(s) 151, 167, 266, 311, 354, 369, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 3 cut(s) 100, 226, 286
Kzo9I GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 8 cut(s) 93, 149, 220, 282, 327, 409, 444, 471
Lsp1109I GCAGC 1 cut(s) 261
MaeI CTAG 2 cut(s) 362, 425
MaeII ACGT 1 cut(s) 435
MalI GATC 8 cut(s) 20, 24, 156, 235, 292, 468, 504, 533
MboI GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
MboII GAAGA 5 cut(s) 76, 123, 191, 357, 529
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 3 cut(s) 268, 302, 313
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 7 cut(s) 30, 52, 357, 412, 473, 477, 492
MluNI TGGCCA 1 cut(s) 386
MnlI CCTC 7 cut(s) 54, 74, 77, 137, 167, 268, 281
Mox20I TGGCCA 1 cut(s) 386
Mph1103I ATGCAT 1 cut(s) 169
MscI TGGCCA 1 cut(s) 386
MseI TTAA 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
NlaIII CATG 3 cut(s) 100, 226, 286
NlaIV GGNNCC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 106
PctI GAATGC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 251
Ple19I CGATCG 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 290
PvuI CGATCG 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 8 cut(s) 18, 22, 154, 233, 290, 466, 502, 531
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 3 cut(s) 268, 302, 313
SetI ASST 9 cut(s) 109, 149, 274, 279, 302, 334, 438, 446, 460
Sse9I AATT 7 cut(s) 30, 52, 357, 412, 473, 477, 492
SspMI CTAG 2 cut(s) 362, 425
SstI GAGCTC 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 457
TaaI ACNGT 3 cut(s) 12, 71, 391
TaiI ACGT 1 cut(s) 438
TaqI TCGA 4 cut(s) 21, 43, 59, 302
TasI AATT 7 cut(s) 30, 52, 357, 412, 473, 477, 492
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 3 cut(s) 17, 376, 394
TseI GCWGC 1 cut(s) 249
TspDTI ATGAA 3 cut(s) 239, 271, 310
TspRI CASTG 3 cut(s) 17, 376, 394
VneI GTGCAC 2 cut(s) 264, 309
VspI ATTAAT 1 cut(s) 476
XapI RAATTY 2 cut(s) 30, 357
XbaI TCTAGA 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 362, 425
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.