RchiOBHm_Chr3g0459331

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015648
Physical Location & Seq
Reverse (-)
7799819 .. 7800876
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42592

Sequence Viewer

Length: 693 bp
ATGTCGAAGATTCATCCAGCTGCAGAGAATAGATACCAATATCAAGATCGTGGGGTTCACCATCATCAGTTGGAAGATGCTCATGATGTAAACCCATCTGTGCTCACTGTATGGAAGAGATCTAGCATGAGTTTTCAGGGAACTGATGGATTTACAGTTTTCGATAACCAAGGAATATTGACTTTCCGAGTTGACAACTATTCCAGGAAGAACTGCGGCGTTCGGAAAGGGCTCGTCCTCATGGACGGAGCTGGAAGAGCCTTGCTCACTCTCAAACCCCAGGTTCTGAGTATGCAAGACCAATGGAACGCATATCCAGGAGACTATGGATGTGCAAAGAGTCCCAAGTCCAGTAGAGTATTCACCATGAGAAATACTGGGTCTGGTCTTTTTGGCCGCGGCAATAAAAGTGAAGCTACAGCCGAGGTGTTCATGGGATCCGAAACTACGAGCCCTACACCGGATTTCAGAATCGAGGGTTGTTTTCGGAGGCGAAATTGCAAAATCAGGAGCAGCAGTGGACAACTGGTGGCCAATGTAGCTAGGAAAAGAGTAAACAACACTGTCATGCTTGGGGAGGATGTGTTCAGCTTGGTGGTACAACCAGGGTTCGACCGTGATCTTATCATGGCCTTTGTAATAGTCCTGGATCGCATTTGTGGGAAGCCTTTAACCCCAATTTTATGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

230

Amino Acids

25.61

Weight (kDa)

9.45

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 217 7.3e-34 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 399
AciI CCGC 3 cut(s) 216, 397, 399
AclWI GGATC 3 cut(s) 432, 445, 657
AcoI YGGCCR 2 cut(s) 394, 531
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 460
AjnI CCWGG 5 cut(s) 203, 279, 316, 604, 645
AjuI GAANNNNNNNTTGG 1 cut(s) 670
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
AluBI AGCT 5 cut(s) 20, 251, 416, 542, 591
AluI AGCT 5 cut(s) 20, 251, 416, 542, 591
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 3 cut(s) 432, 445, 657
AlwNI CAGNNNCTG 1 cut(s) 286
AoxI GGCC 3 cut(s) 394, 531, 630
ApeKI GCWGC 2 cut(s) 20, 513
AsuHPI GGTGA 2 cut(s) 50, 355
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 437
BanII GRGCYC 2 cut(s) 234, 455
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 7, 525
BccI CCATC 3 cut(s) 69, 103, 140
BciT130I CCWGG 5 cut(s) 205, 281, 318, 606, 647
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 2 cut(s) 123, 543
BfmI CTRYAG 2 cut(s) 21, 417
BglII AGATCT 1 cut(s) 119
BisI GCNGC 5 cut(s) 21, 217, 397, 400, 514
BlsI GCNGC 5 cut(s) 22, 218, 398, 401, 515
Bme1390I CCNGG 5 cut(s) 205, 281, 318, 606, 647
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 5 cut(s) 205, 281, 318, 606, 647
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BsaJI CCNNGG 5 cut(s) 169, 279, 397, 423, 605
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 4 cut(s) 502, 532, 569, 599
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 3 cut(s) 351, 382, 531
BseBI CCWGG 5 cut(s) 205, 281, 318, 606, 647
BseDI CCNNGG 5 cut(s) 169, 279, 397, 423, 605
BseGI GGATG 3 cut(s) 13, 335, 586
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 3 cut(s) 351, 382, 531
BseXI GCAGC 2 cut(s) 7, 525
Bsh1236I CGCG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 3 cut(s) 396, 533, 632
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 3 cut(s) 396, 533, 632
Bsp1286I GDGCHC 3 cut(s) 105, 234, 455
Bsp143I GATC 5 cut(s) 46, 119, 437, 619, 649
BspACI CCGC 3 cut(s) 216, 397, 399
BspANI GGCC 3 cut(s) 396, 533, 632
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 3 cut(s) 432, 445, 657
BspQI GCTCTTC 1 cut(s) 250
BsrI ACTGG 3 cut(s) 351, 382, 531
BssECI CCNNGG 5 cut(s) 169, 279, 397, 423, 605
BssMI GATC 5 cut(s) 46, 119, 437, 619, 649
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 5 cut(s) 205, 281, 318, 606, 647
Bst4CI ACNGT 4 cut(s) 109, 157, 565, 617
Bst6I CTCTTC 2 cut(s) 110, 250
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 13, 335, 586
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 5 cut(s) 49, 122, 440, 622, 652
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 5 cut(s) 46, 119, 437, 619, 649
BstMCI CGRYCG 1 cut(s) 616
BstMWI GCNNNNNNNGC 2 cut(s) 257, 539
BstNI CCWGG 5 cut(s) 205, 281, 318, 606, 647
BstSCI CCNGG 5 cut(s) 203, 279, 316, 604, 645
BstSFI CTRYAG 2 cut(s) 21, 417
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 7, 525
BstX2I RGATCY 2 cut(s) 119, 437
BstYI RGATCY 2 cut(s) 119, 437
BsuRI GGCC 3 cut(s) 396, 533, 632
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 3 cut(s) 13, 335, 586
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 3 cut(s) 105, 523, 561
CaiI CAGNNNCTG 1 cut(s) 286
CciI TCATGA 1 cut(s) 82
Cfr42I CCGCGG 1 cut(s) 400
Csp6I GTAC 1 cut(s) 599
CviAII CATG 7 cut(s) 83, 127, 241, 367, 433, 568, 628
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 1 cut(s) 287
DpnI GATC 5 cut(s) 48, 121, 439, 621, 651
DpnII GATC 5 cut(s) 46, 119, 437, 619, 649
EaeI YGGCCR 2 cut(s) 394, 531
Eam1104I CTCTTC 2 cut(s) 110, 250
EarI CTCTTC 2 cut(s) 110, 250
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 234, 455
EcoRII CCWGG 5 cut(s) 203, 279, 316, 604, 645
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 234, 455
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 7 cut(s) 86, 130, 244, 370, 436, 571, 631
FaqI GGGAC 1 cut(s) 327
FatI CATG 7 cut(s) 82, 126, 240, 366, 432, 567, 627
Fnu4HI GCNGC 5 cut(s) 21, 217, 397, 400, 514
FokI GGATG 2 cut(s) 342, 593
FriOI GRGCYC 2 cut(s) 234, 455
Fsp4HI GCNGC 5 cut(s) 21, 217, 397, 400, 514
FspBI CTAG 2 cut(s) 123, 543
GluI GCNGC 5 cut(s) 21, 217, 397, 400, 514
HaeIII GGCC 3 cut(s) 396, 533, 632
HapII CCGG 1 cut(s) 461
Hin1II CATG 7 cut(s) 86, 130, 244, 370, 436, 571, 631
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 3 cut(s) 10, 340, 471
HpaII CCGG 1 cut(s) 461
HphI GGTGA 2 cut(s) 50, 355
Hpy166II GTNNAC 5 cut(s) 58, 91, 193, 521, 556
Hpy188I TCNGA 6 cut(s) 188, 225, 288, 442, 470, 489
Hpy188III TCNNGA 4 cut(s) 44, 83, 508, 690
Hpy8I GTNNAC 5 cut(s) 58, 91, 193, 521, 556
HpyCH4III ACNGT 4 cut(s) 109, 157, 565, 617
HpyCH4V TGCA 4 cut(s) 23, 295, 335, 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 539
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 7 cut(s) 86, 130, 244, 370, 436, 571, 631
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 5 cut(s) 46, 119, 437, 619, 649
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 248, 510
Lsp1109I GCAGC 2 cut(s) 7, 525
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 123, 543
MalI GATC 5 cut(s) 48, 121, 439, 621, 651
MboI GATC 5 cut(s) 46, 119, 437, 619, 649
MboII GAAGA 5 cut(s) 19, 86, 127, 220, 267
MflI RGATCY 2 cut(s) 119, 437
MhlI GDGCHC 3 cut(s) 105, 234, 455
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 2 cut(s) 496, 678
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 5 cut(s) 248, 418, 469, 483, 571
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 1 cut(s) 671
MslI CAYNNNNRTG 1 cut(s) 566
Msp20I TGGCCA 1 cut(s) 533
MspA1I CMGCKG 2 cut(s) 20, 399
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 5 cut(s) 205, 281, 318, 606, 647
MvaI CCWGG 5 cut(s) 205, 281, 318, 606, 647
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 257, 539
NdeII GATC 5 cut(s) 46, 119, 437, 619, 649
NlaIII CATG 7 cut(s) 86, 130, 244, 370, 436, 571, 631
NlaIV GGNNCC 1 cut(s) 439
NmeAIII GCCGAG 1 cut(s) 448
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 250
PfeI GAWTC 2 cut(s) 10, 471
PfoI TCCNGGA 3 cut(s) 203, 316, 645
PkrI GCNGC 5 cut(s) 22, 218, 398, 401, 515
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
Psp6I CCWGG 5 cut(s) 203, 279, 316, 604, 645
PspGI CCWGG 5 cut(s) 203, 279, 316, 604, 645
PspN4I GGNNCC 1 cut(s) 439
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 119, 437
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 566
SacII CCGCGG 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 671
SatI GCNGC 5 cut(s) 21, 217, 397, 400, 514
Sau3AI GATC 5 cut(s) 46, 119, 437, 619, 649
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 5 cut(s) 205, 281, 318, 606, 647
SduI GDGCHC 3 cut(s) 105, 234, 455
SetI ASST 7 cut(s) 22, 253, 285, 418, 429, 544, 593
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 2 cut(s) 21, 417
Sfr303I CCGCGG 1 cut(s) 400
SgrBI CCGCGG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 566
Sse9I AATT 2 cut(s) 496, 678
SsiI CCGC 3 cut(s) 216, 397, 399
SspI AATATT 1 cut(s) 177
SspMI CTAG 2 cut(s) 123, 543
StyD4I CCNGG 5 cut(s) 203, 279, 316, 604, 645
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 4 cut(s) 109, 157, 565, 617
TaqI TCGA 4 cut(s) 5, 162, 474, 612
TasI AATT 2 cut(s) 496, 678
TauI GCSGC 3 cut(s) 219, 399, 402
TfiI GAWTC 2 cut(s) 10, 471
Tru1I TTAA 1 cut(s) 671
Tru9I TTAA 1 cut(s) 671
TscAI CASTG 3 cut(s) 112, 523, 568
TseI GCWGC 2 cut(s) 20, 513
TspDTI ATGAA 1 cut(s) 421
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 112, 523, 568
XspI CTAG 2 cut(s) 123, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.