MD12G1196000.v1.1

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015648
Physical Location & Seq
Forward (+)
27708807 .. 27709764
958 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1196000.v1.1.491

Sequence Viewer

Length: 666 bp
ATGTCCAGGATACATCCAGCATCGGCGTTGAAAGAAAGGGTTCATCATCAGTTGGAAGATGTTCATGCGCCACCGTCTGTGCTCACCGTGTGGAAGAGATCTAGCATGAGTTTCCAGGGAACTGATGGATTTACAGTGTTTGACGATCGCGGAATACTAAGTTTTCGAGTAGACAATTATTCGAGGAAGAACTGTTGTGTTAGAGGAGGGCTTGTCCTCATGGATGGAGCTGGAAGAGCCTTGCTAACCCTCAAACCCCAGATGTTGAGCTTGCAAGTTCAATGGAATGCATATAGAGGAGAAGATGGATATGGAAAGAACCCTAAATCCAGCAGAGTCTTCACCATGAAAAGTGGATCAAATCTTTTTGGCAGCAGAAACAAAAGTGAAGCGGCAGAGGTGTTCATGGGAGGGCCAAGTTCAAATAGTACACCAGATTTCAGAATTGAAGGTTGTTTTGGGAGAAGAAACTGCAAAATCAGAGATCGCAGTGGAGAACTTGTTGCCACTGTGTCTAGAAAAAGAGTAAATAATTCAGTCTTGCTTGAAAACGACGTGTTCAGCTTGGTGGTGCAACCTGGATTTGATCTTGAATTAATTATGGGTTTTGTAATGGTTTTGGATCGGATTTGTGGGAAGACATTTACACCAATTTTGTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

222

Amino Acids

24.56

Weight (kDa)

9.5

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 27 - 208 3.6e-33 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 150
AciI CCGC 2 cut(s) 150, 392
AclWI GGATC 2 cut(s) 364, 630
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 6 cut(s) 31, 281, 423, 449, 548, 593
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 3 cut(s) 5, 114, 577
AjuI GAANNNNNNNTTGG 3 cut(s) 441, 473, 643
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 230, 270, 564
AluI AGCT 3 cut(s) 230, 270, 564
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 2 cut(s) 364, 630
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 1 cut(s) 372
AseI ATTAAT 1 cut(s) 596
Asp700I GAANNNNTTC 2 cut(s) 39, 60
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 76, 334
BbsI GAAGAC 2 cut(s) 331, 644
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 384
BccI CCATC 3 cut(s) 119, 218, 299
BciT130I CCWGG 3 cut(s) 7, 116, 579
BciVI GTATCC 1 cut(s) 3
BfaI CTAG 2 cut(s) 102, 516
BfuI GTATCC 1 cut(s) 3
BglII AGATCT 1 cut(s) 98
BisI GCNGC 2 cut(s) 373, 393
BlsI GCNGC 2 cut(s) 374, 394
Bme1390I CCNGG 3 cut(s) 7, 116, 579
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 413
BmrFI CCNGG 3 cut(s) 7, 116, 579
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 2 cut(s) 331, 644
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 4 cut(s) 198, 228, 486, 516
BseBI CCWGG 3 cut(s) 7, 116, 579
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 13, 229
BseRI GAGGAG 2 cut(s) 219, 312
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 6 cut(s) 98, 145, 356, 484, 586, 622
BspACI CCGC 2 cut(s) 150, 392
BspANI GGCC 1 cut(s) 415
BspFNI CGCG 1 cut(s) 150
BspPI GGATC 2 cut(s) 364, 630
BspQI GCTCTTC 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 6 cut(s) 98, 145, 356, 484, 586, 622
Bst2UI CCWGG 3 cut(s) 7, 116, 579
Bst4CI ACNGT 5 cut(s) 75, 88, 136, 194, 511
Bst6I CTCTTC 2 cut(s) 89, 229
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 13, 229
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 6 cut(s) 101, 148, 359, 487, 589, 625
BstMBI GATC 6 cut(s) 98, 145, 356, 484, 586, 622
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 3 cut(s) 7, 116, 579
BstSCI CCNGG 3 cut(s) 5, 114, 577
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 2 cut(s) 331, 644
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 415
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 2 cut(s) 13, 229
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 3 cut(s) 141, 496, 507
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 429
CviAII CATG 5 cut(s) 65, 106, 220, 346, 406
CviJI RGCY 6 cut(s) 211, 230, 239, 270, 415, 564
CviKI_1 RGCY 6 cut(s) 211, 230, 239, 270, 415, 564
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 1 cut(s) 158
DpnI GATC 6 cut(s) 100, 147, 358, 486, 588, 624
DpnII GATC 6 cut(s) 98, 145, 356, 484, 586, 622
DraIII CACNNNGTG 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 89, 229
EarI CTCTTC 2 cut(s) 89, 229
EcoRII CCWGG 3 cut(s) 5, 114, 577
EcoT22I ATGCAT 1 cut(s) 292
FaeI CATG 5 cut(s) 68, 109, 223, 349, 409
FaiI YATR 9 cut(s) 66, 107, 221, 292, 294, 312, 347, 407, 602
FatI CATG 5 cut(s) 64, 105, 219, 345, 405
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 373, 393
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 373, 393
FspBI CTAG 2 cut(s) 102, 516
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 373, 393
HaeIII GGCC 1 cut(s) 415
HhaI GCGC 1 cut(s) 70
Hin1II CATG 5 cut(s) 68, 109, 223, 349, 409
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 1 cut(s) 336
HphI GGTGA 2 cut(s) 76, 334
Hpy166II GTNNAC 2 cut(s) 172, 431
Hpy188I TCNGA 3 cut(s) 443, 482, 627
Hpy188III TCNNGA 3 cut(s) 516, 590, 663
Hpy8I GTNNAC 2 cut(s) 172, 431
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 5 cut(s) 75, 88, 136, 194, 511
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 274, 290, 474, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 5 cut(s) 68, 109, 223, 349, 409
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 6 cut(s) 98, 145, 356, 484, 586, 622
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 29
MaeI CTAG 2 cut(s) 102, 516
MaeII ACGT 1 cut(s) 555
MalI GATC 6 cut(s) 100, 147, 358, 486, 588, 624
MboI GATC 6 cut(s) 98, 145, 356, 484, 586, 622
MboII GAAGA 8 cut(s) 68, 106, 199, 246, 314, 331, 477, 649
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 6 cut(s) 175, 444, 532, 593, 597, 651
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 8 cut(s) 177, 197, 200, 227, 260, 290, 391, 404
Mph1103I ATGCAT 1 cut(s) 292
MroXI GAANNNNTTC 2 cut(s) 39, 60
MseI TTAA 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 7, 116, 579
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 3 cut(s) 7, 116, 579
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 6 cut(s) 98, 145, 356, 484, 586, 622
NlaIII CATG 5 cut(s) 68, 109, 223, 349, 409
NsiI ATGCAT 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 229
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 39, 60
PfoI TCCNGGA 1 cut(s) 5
PkrI GCNGC 2 cut(s) 374, 394
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 596
Psp6I CCWGG 3 cut(s) 5, 114, 577
PspGI CCWGG 3 cut(s) 5, 114, 577
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 98
PvuI CGATCG 1 cut(s) 148
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 2 cut(s) 373, 393
Sau3AI GATC 6 cut(s) 98, 145, 356, 484, 586, 622
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 3 cut(s) 7, 116, 579
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 232, 272, 402, 454, 558, 566, 580
SfaNI GCATC 1 cut(s) 29
Sse9I AATT 6 cut(s) 175, 444, 532, 593, 597, 651
SsiI CCGC 2 cut(s) 150, 392
SspMI CTAG 2 cut(s) 102, 516
StyD4I CCNGG 3 cut(s) 5, 114, 577
TaaI ACNGT 5 cut(s) 75, 88, 136, 194, 511
TaiI ACGT 1 cut(s) 558
TaqI TCGA 2 cut(s) 166, 182
TasI AATT 6 cut(s) 175, 444, 532, 593, 597, 651
TatI WGTACW 1 cut(s) 428
TauI GCSGC 1 cut(s) 395
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 3 cut(s) 141, 496, 514
TseI GCWGC 1 cut(s) 372
TspDTI ATGAA 4 cut(s) 32, 53, 362, 394
TspRI CASTG 3 cut(s) 141, 496, 514
VspI ATTAAT 1 cut(s) 596
XbaI TCTAGA 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 2 cut(s) 39, 60
XspI CTAG 2 cut(s) 102, 516
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.