Rh3AG093400

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015648
Physical Location & Seq
Reverse (-)
7651452 .. 7651853
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG093400.1

Sequence Viewer

Length: 402 bp
ATGCAAGACCAATGGAACGCATATCGAGGAGACTATGGATGTGCAAAGAGTCCCAAGTCCAGTAGAGTATTCACCATGAGAAATACTGGGTCTGGTGTTTTTGGCCGCGGCAATAAAAGTGAAGCTACAGCCGAGGTGTTCATGGGATCCGAAACTACGAGCCCTACACCGGATTTCAGAATCGAGGGTTGTTTTCGGAGGCGAAATTGCAAAATCAGGAGCAGCAGTGGACAACTGGTGGCCAATGTAGCTAGGAAAAGAGTAAACAACACAGTCATGCTTGGGGAGGATGTGTTCAGCTTGGTGGTACAACCAGGGTTCGACCGTGATCTTATCATGGCCTTTGTAATAGTCTTGGATCGCATTTGTGGGAAGCCTTTAACCCCAATTTTATGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

133

Amino Acids

14.72

Weight (kDa)

9.54

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 3 - 120 2.6e-20 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 106, 108
AclWI GGATC 3 cut(s) 141, 154, 366
AcoI YGGCCR 2 cut(s) 103, 240
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 169
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 125, 251, 300
AluI AGCT 3 cut(s) 125, 251, 300
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 3 cut(s) 141, 154, 366
AoxI GGCC 3 cut(s) 103, 240, 339
ApeKI GCWGC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 64
BalI TGGCCA 1 cut(s) 242
BamHI GGATCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 3 cut(s) 106, 109, 223
BlsI GCNGC 3 cut(s) 107, 110, 224
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 315
BmrI ACTGGG 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 106, 132, 314
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 60, 91, 240
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 106, 132, 314
BseGI GGATG 2 cut(s) 44, 295
BseLI CCNNNNNNNGG 1 cut(s) 169
BseNI ACTGG 3 cut(s) 60, 91, 240
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 105, 242, 341
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 3 cut(s) 105, 242, 341
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 146, 328, 358
BspACI CCGC 2 cut(s) 106, 108
BspANI GGCC 3 cut(s) 105, 242, 341
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 3 cut(s) 141, 154, 366
BsrI ACTGG 3 cut(s) 60, 91, 240
BssECI CCNNGG 3 cut(s) 106, 132, 314
BssMI GATC 3 cut(s) 146, 328, 358
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 274, 326
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 44, 295
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 149, 331, 361
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 146, 328, 358
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 3 cut(s) 105, 242, 341
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 44, 295
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cfr42I CCGCGG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 308
CviAII CATG 4 cut(s) 76, 142, 277, 337
CviJI RGCY 9 cut(s) 105, 125, 131, 162, 242, 251, 300, 341, 376
CviKI_1 RGCY 9 cut(s) 105, 125, 131, 162, 242, 251, 300, 341, 376
CviQI GTAC 1 cut(s) 308
DpnI GATC 3 cut(s) 148, 330, 360
DpnII GATC 3 cut(s) 146, 328, 358
EaeI YGGCCR 2 cut(s) 103, 240
Eco24I GRGCYC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 4 cut(s) 79, 145, 280, 340
FaiI YATR 7 cut(s) 22, 36, 77, 143, 278, 338, 394
FaqI GGGAC 1 cut(s) 36
FatI CATG 4 cut(s) 75, 141, 276, 336
Fnu4HI GCNGC 3 cut(s) 106, 109, 223
FokI GGATG 2 cut(s) 51, 302
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 106, 109, 223
FspBI CTAG 1 cut(s) 252
GluI GCNGC 3 cut(s) 106, 109, 223
HaeIII GGCC 3 cut(s) 105, 242, 341
HapII CCGG 1 cut(s) 170
Hin1II CATG 4 cut(s) 79, 145, 280, 340
HinfI GANTC 2 cut(s) 49, 180
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 230, 265
Hpy188I TCNGA 3 cut(s) 151, 179, 198
Hpy188III TCNNGA 2 cut(s) 217, 399
Hpy8I GTNNAC 2 cut(s) 230, 265
HpyCH4III ACNGT 2 cut(s) 274, 326
HpyCH4V TGCA 3 cut(s) 4, 44, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92II CATG 4 cut(s) 79, 145, 280, 340
KspI CCGCGG 1 cut(s) 109
Kzo9I GATC 3 cut(s) 146, 328, 358
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 8 cut(s) 72, 73, 78, 183, 202, 221, 300, 327
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 1 cut(s) 252
MalI GATC 3 cut(s) 148, 330, 360
MboI GATC 3 cut(s) 146, 328, 358
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 2 cut(s) 205, 387
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 5 cut(s) 20, 127, 178, 192, 280
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 3 cut(s) 146, 328, 358
NlaIII CATG 4 cut(s) 79, 145, 280, 340
NlaIV GGNNCC 1 cut(s) 148
NmeAIII GCCGAG 1 cut(s) 157
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 3 cut(s) 107, 110, 224
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 148
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 275
SacII CCGCGG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 3 cut(s) 106, 109, 223
Sau3AI GATC 3 cut(s) 146, 328, 358
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 127, 138, 253, 302
SfcI CTRYAG 1 cut(s) 126
Sfr303I CCGCGG 1 cut(s) 109
SgrBI CCGCGG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 2 cut(s) 205, 387
SsiI CCGC 2 cut(s) 106, 108
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 274, 326
TaqI TCGA 3 cut(s) 25, 183, 321
TasI AATT 2 cut(s) 205, 387
TauI GCSGC 2 cut(s) 108, 111
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.