Prupe.6G300500_v2.0.a1

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015648
Physical Location & Seq
Forward (+)
27286916 .. 27288147
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G300500.1

Sequence Viewer

Length: 687 bp
ATGTCTAGGATACATCCGGCTGCAGTAAATAGATACCACGATCATGATCAAGATCATCCGCTGGAGCTTCAAGATGTTCATGATCATCGTGTGCCTCCCTCTGCGCTCACTGTGTGGAAGAGATCCAGCATGAGTTTCCAGGGGACTGACGGATTTACAGTGTTCGATGACCGCGGAATATTGACTTTCCGAGTGGACAACTATTCGAGAAAAAACTGTTGTGTTAGAGGAGGGCTTGTCCTAATGGACGGAGTCGGAAGGGCCTTGCTGACCCTCAAACCCCAGATGTTGAGCATGCAAGACCAATGGAATGCATATAGAGGAGAAGATGGGTGTGGAAAGAGCCCAAAATCTAGCAGGGTGTTTGCCATGAGAAGTGGGTCTGGCCTTTTTGGCAGCGGCAACAAGAGTGAAGCAGCTGAGGTGTTCATGGGAGCTCATGCAACTGGCACCCCAGATTTCAGAATTGAGGGTTGTTTTGGGAGACGAAATTGCAAAATCAGAAGCCGCAGTGGACAATTGGTGGCCAGTGTAGCTAGAAAGAGAGTAAACAATACAGTCTTGCTTGACAATGATGTGTTCAACTTGGTGGTTCAACCAGGCTTCGACCTTGACCTTATTATGGGTTTTGTAATTATCTTGGATCGGATTTGTGGGAAGCCATTTACCCCAATTTTGTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

229

Amino Acids

25.29

Weight (kDa)

9.06

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 1 cut(s) 174
AciI CCGC 5 cut(s) 59, 172, 174, 399, 508
AclWI GGATC 2 cut(s) 117, 651
AcoI YGGCCR 1 cut(s) 525
AdeI CACNNNGTG 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 622
AgsI TTSAA 3 cut(s) 71, 583, 596
AjnI CCWGG 2 cut(s) 138, 598
AjuI GAANNNNNNNTTGG 1 cut(s) 664
AluBI AGCT 4 cut(s) 67, 419, 437, 536
AluI AGCT 4 cut(s) 67, 419, 437, 536
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 478
AlwI GGATC 2 cut(s) 117, 651
AoxI GGCC 3 cut(s) 261, 385, 525
ApeKI GCWGC 3 cut(s) 20, 396, 416
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 261
BalI TGGCCA 1 cut(s) 527
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 347, 439
Bbv12I GWGCWC 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 7, 408, 428
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 140, 600
BciVI GTATCC 1 cut(s) 3
BclI TGATCA 2 cut(s) 46, 82
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 3 cut(s) 6, 354, 537
BfmI CTRYAG 1 cut(s) 21
BfuI GTATCC 1 cut(s) 3
BglI GCCNNNNNGGC 1 cut(s) 393
BisI GCNGC 5 cut(s) 21, 397, 400, 417, 508
BlsI GCNGC 5 cut(s) 22, 398, 401, 418, 509
Bme1390I CCNGG 2 cut(s) 140, 600
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 2 cut(s) 140, 600
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 420
BsaBI GATNNNNATC 2 cut(s) 45, 51
BsaJI CCNNGG 2 cut(s) 139, 172
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse1I ACTGG 2 cut(s) 451, 528
Bse8I GATNNNNATC 2 cut(s) 45, 51
BseBI CCWGG 2 cut(s) 140, 600
BseDI CCNNGG 2 cut(s) 139, 172
BseGI GGATG 2 cut(s) 13, 55
BseJI GATNNNNATC 2 cut(s) 45, 51
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 451, 528
BseRI GAGGAG 2 cut(s) 243, 336
BseXI GCAGC 3 cut(s) 7, 408, 428
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 263, 387, 527
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 1 cut(s) 478
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 3 cut(s) 263, 387, 527
Bsp1286I GDGCHC 2 cut(s) 347, 439
Bsp143I GATC 6 cut(s) 40, 46, 52, 82, 122, 643
BspACI CCGC 5 cut(s) 59, 172, 174, 399, 508
BspANI GGCC 3 cut(s) 263, 387, 527
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 2 cut(s) 43, 79
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 2 cut(s) 117, 651
BspT107I GGYRCC 1 cut(s) 449
BsrI ACTGG 2 cut(s) 451, 528
BssECI CCNNGG 2 cut(s) 139, 172
BssMI GATC 6 cut(s) 40, 46, 52, 82, 122, 643
Bst2UI CCWGG 2 cut(s) 140, 600
Bst4CI ACNGT 4 cut(s) 112, 160, 218, 559
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 13, 55
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 6 cut(s) 43, 49, 55, 85, 125, 646
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 6 cut(s) 40, 46, 52, 82, 122, 643
BstMWI GCNNNNNNNGC 2 cut(s) 393, 533
BstNI CCWGG 2 cut(s) 140, 600
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 138, 598
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 7, 408, 428
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 3 cut(s) 263, 387, 527
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 13, 55
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 4 cut(s) 108, 165, 517, 535
Cac8I GCNNGC 1 cut(s) 296
CciI TCATGA 2 cut(s) 43, 79
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 261
Cfr42I CCGCGG 1 cut(s) 175
CviAII CATG 7 cut(s) 44, 80, 130, 295, 370, 430, 440
DdeI CTNAG 1 cut(s) 420
DpnI GATC 6 cut(s) 42, 48, 54, 84, 124, 645
DpnII GATC 6 cut(s) 40, 46, 52, 82, 122, 643
DraIII CACNNNGTG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 437
Eco24I GRGCYC 2 cut(s) 347, 439
Eco53kI GAGCTC 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 138, 598
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 347, 439
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 7 cut(s) 47, 83, 133, 298, 373, 433, 443
FaqI GGGAC 1 cut(s) 157
FatI CATG 7 cut(s) 43, 79, 129, 294, 369, 429, 439
FbaI TGATCA 2 cut(s) 46, 82
Fnu4HI GCNGC 5 cut(s) 21, 397, 400, 417, 508
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 2 cut(s) 347, 439
Fsp4HI GCNGC 5 cut(s) 21, 397, 400, 417, 508
FspBI CTAG 3 cut(s) 6, 354, 537
GlaI GCGC 1 cut(s) 105
GluI GCNGC 5 cut(s) 21, 397, 400, 417, 508
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 3 cut(s) 263, 387, 527
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 106
Hin1II CATG 7 cut(s) 47, 83, 133, 298, 373, 433, 443
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 252
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 196, 515, 550
Hpy188I TCNGA 5 cut(s) 191, 257, 464, 503, 648
Hpy188III TCNNGA 5 cut(s) 44, 50, 71, 80, 207
Hpy8I GTNNAC 3 cut(s) 196, 515, 550
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 4 cut(s) 112, 160, 218, 559
HpyCH4V TGCA 5 cut(s) 23, 298, 314, 443, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 533
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 7 cut(s) 47, 83, 133, 298, 373, 433, 443
HspAI GCGC 1 cut(s) 104
Ksp22I TGATCA 2 cut(s) 46, 82
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 6 cut(s) 40, 46, 52, 82, 122, 643
LmnI GCTCC 2 cut(s) 64, 434
Lsp1109I GCAGC 3 cut(s) 7, 408, 428
MaeI CTAG 3 cut(s) 6, 354, 537
MalI GATC 6 cut(s) 42, 48, 54, 84, 124, 645
MboI GATC 6 cut(s) 40, 46, 52, 82, 122, 643
MboII GAAGA 2 cut(s) 130, 338
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 347, 439
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 5 cut(s) 465, 490, 518, 633, 672
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 8 cut(s) 105, 109, 221, 224, 284, 314, 415, 463
Mox20I TGGCCA 1 cut(s) 527
Mph1103I ATGCAT 1 cut(s) 316
MscI TGGCCA 1 cut(s) 527
MseI TTAA 1 cut(s) 685
MslI CAYNNNNRTG 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 4 cut(s) 61, 174, 399, 419
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 140, 600
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 2 cut(s) 140, 600
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 393, 533
NdeII GATC 6 cut(s) 40, 46, 52, 82, 122, 643
NlaIII CATG 7 cut(s) 47, 83, 133, 298, 373, 433, 443
NlaIV GGNNCC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PagI TCATGA 2 cut(s) 43, 79
PctI GAATGC 1 cut(s) 316
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 5 cut(s) 22, 398, 401, 418, 509
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 138, 598
PspGI CCWGG 2 cut(s) 138, 598
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 42
SacI GAGCTC 1 cut(s) 439
SacII CCGCGG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 685
SatI GCNGC 5 cut(s) 21, 397, 400, 417, 508
Sau3AI GATC 6 cut(s) 40, 46, 52, 82, 122, 643
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 140, 600
SduI GDGCHC 2 cut(s) 347, 439
SetI ASST 7 cut(s) 69, 421, 426, 439, 538, 612, 618
SfcI CTRYAG 1 cut(s) 21
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 42
SphI GCATGC 1 cut(s) 298
Sse9I AATT 5 cut(s) 465, 490, 518, 633, 672
SsiI CCGC 5 cut(s) 59, 172, 174, 399, 508
SspI AATATT 1 cut(s) 180
SspMI CTAG 3 cut(s) 6, 354, 537
SstI GAGCTC 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 138, 598
TaaI ACNGT 4 cut(s) 112, 160, 218, 559
TaqI TCGA 3 cut(s) 165, 206, 606
TasI AATT 5 cut(s) 465, 490, 518, 633, 672
TauI GCSGC 2 cut(s) 402, 510
Tru1I TTAA 1 cut(s) 685
Tru9I TTAA 1 cut(s) 685
TscAI CASTG 4 cut(s) 115, 165, 517, 535
TseI GCWGC 3 cut(s) 20, 396, 416
TspDTI ATGAA 2 cut(s) 68, 418
TspGWI ACGGA 2 cut(s) 165, 264
TspRI CASTG 4 cut(s) 115, 165, 517, 535
Tth111I GACNNNGTC 1 cut(s) 251
XceI RCATGY 1 cut(s) 298
XspI CTAG 3 cut(s) 6, 354, 537
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.