MD04G1180700.v1.1

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015648
Physical Location & Seq
Forward (+)
27151629 .. 27152623
995 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1180700.v1.1.491

Sequence Viewer

Length: 669 bp
ATGTCGAGGATACATCCGGCCGCGTCGTTGAAAGAAAGGTTTCATCATCAGGTGGAAGATGTTCATGTGCCTCCGTCTGTGCTCACCGTGTGGAAGAGATCCAGCATGAGTTTCCAGGGAACTGATGGATTTACAGTGTTTGACAATCGCGGAATTCTAACTTTTCGAGTAGACAATTATTCGAGGAAGAACTGTTGCGTTAGAGGAGGACTTGGACTCATGGATGGAGCTGGAAGAGCCTTGCTGACCCTCAAACCCCAGATGTTGAGCTTGCAAGACCAATGGAATGCATATAGAGGAGAAGATGGATGTGGAAAGAACCCTAAATCCAGCAGAGTGTTCACCATGAAAAGTGGATCAAATCTTTTTGGCAGCAGAAATAAAAGTGCACCAGCTGAGGTGTTCATGGGAGGATCCACGAGCTCGAATAGTGCACCAGATTTCATAGTTAAAGGTTGTTTTGGGAGAAGAAACTGCAAAATTAGAGATTGCAGTGGAGAACTTGTGGCCACTGTGTCCAGAAAACGAGTAAATAATTCAGTCTTGCTTGAAAACGACGTGTTCAGCTTGGTGGTGCAACCTGGATTTGATCTTGAATTAATTATGGGTTTTGTAATTGTTTTGGATCGGATTTGTGGGAAGACATTTACCCCGATCTTGTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

223

Amino Acids

24.45

Weight (kDa)

9.45

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 27 - 209 2.2e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09120
malus_domestica MD04G1180600.v1.1 MD04G1180700.v1.1 MD12G1196000.v1.1
prunus_persica Prupe.6G300500_v2.0.a1
pyrus_communis pycom04g15980
rosa_chinensis RchiOBHm_Chr3g0459331
rosa_laevigata RLG00000025090
rosa_multiflora Rmu_sc0006944.1_g000004
rosa_roxburghii Rroxscaffold_6G00420260
rosa_rugosa Rorug03G0035400
rosa_samantha Rh3AG093400 Rh3BG096400 Rh3CG097600 Rh3DG097000
rosa_wichuraiana Rw3G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AccII CGCG 2 cut(s) 23, 150
AciI CCGC 2 cut(s) 21, 150
AclWI GGATC 5 cut(s) 93, 364, 408, 421, 633
AcoI YGGCCR 2 cut(s) 18, 507
AcsI RAATTY 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 31, 551, 596
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 2 cut(s) 114, 580
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 230, 270, 395, 423, 567
AluI AGCT 5 cut(s) 230, 270, 395, 423, 567
Alw21I GWGCWC 4 cut(s) 84, 391, 425, 436
Alw44I GTGCAC 2 cut(s) 387, 432
AlwI GGATC 5 cut(s) 93, 364, 408, 421, 633
AoxI GGCC 2 cut(s) 18, 507
ApaLI GTGCAC 2 cut(s) 387, 432
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 153
AseI ATTAAT 1 cut(s) 599
Asp700I GAANNNNTTC 2 cut(s) 39, 60
AsuHPI GGTGA 2 cut(s) 76, 334
BaeGI GKGCMC 2 cut(s) 391, 436
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 425
BauI CACGAG 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 4 cut(s) 84, 391, 425, 436
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 384
BccI CCATC 3 cut(s) 119, 218, 299
BciT130I CCWGG 2 cut(s) 116, 582
BciVI GTATCC 1 cut(s) 3
BfuI GTATCC 1 cut(s) 3
BisI GCNGC 2 cut(s) 21, 373
BlsI GCNGC 2 cut(s) 22, 374
Bme1390I CCNGG 2 cut(s) 116, 582
BmgBI CACGTC 1 cut(s) 559
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 2 cut(s) 116, 582
BpiI GAAGAC 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
BseBI CCWGG 2 cut(s) 116, 582
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 3 cut(s) 13, 229, 314
BseMII CTCAG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 219, 312
BseSI GKGCMC 2 cut(s) 391, 436
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 384
Bsh1236I CGCG 2 cut(s) 23, 150
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 20, 509
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 4 cut(s) 84, 391, 425, 436
BsiSI CCGG 1 cut(s) 17
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 2 cut(s) 20, 509
Bsp1286I GDGCHC 4 cut(s) 84, 391, 425, 436
Bsp143I GATC 6 cut(s) 98, 356, 413, 589, 625, 654
BspACI CCGC 2 cut(s) 21, 150
BspANI GGCC 2 cut(s) 20, 509
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 2 cut(s) 23, 150
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 5 cut(s) 93, 364, 408, 421, 633
BspQI GCTCTTC 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 6 cut(s) 98, 356, 413, 589, 625, 654
BssSI CACGAG 1 cut(s) 418
Bst2BI CACGAG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 116, 582
Bst4CI ACNGT 4 cut(s) 88, 136, 194, 514
Bst6I CTCTTC 2 cut(s) 89, 229
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 13, 229, 314
BstFNI CGCG 2 cut(s) 23, 150
BstKTI GATC 6 cut(s) 101, 359, 416, 592, 628, 657
BstMBI GATC 6 cut(s) 98, 356, 413, 589, 625, 654
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 116, 582
BstSCI CCNGG 2 cut(s) 114, 580
BstSLI GKGCMC 2 cut(s) 391, 436
BstUI CGCG 2 cut(s) 23, 150
BstV1I GCAGC 1 cut(s) 384
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 2 cut(s) 98, 413
BstYI RGATCY 2 cut(s) 98, 413
BstZI CGGCCG 1 cut(s) 18
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 2 cut(s) 20, 509
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 3 cut(s) 13, 229, 314
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 3 cut(s) 141, 499, 510
Cac8I GCNNGC 1 cut(s) 272
CseI GACGC 1 cut(s) 12
CviAII CATG 5 cut(s) 65, 106, 220, 346, 406
CviJI RGCY 8 cut(s) 20, 230, 239, 270, 395, 423, 509, 567
CviKI_1 RGCY 8 cut(s) 20, 230, 239, 270, 395, 423, 509, 567
DdeI CTNAG 1 cut(s) 396
DpnI GATC 6 cut(s) 100, 358, 415, 591, 627, 656
DpnII GATC 6 cut(s) 98, 356, 413, 589, 625, 654
DraIII CACNNNGTG 1 cut(s) 90
EaeI YGGCCR 2 cut(s) 18, 507
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 89, 229
EarI CTCTTC 2 cut(s) 89, 229
Ecl136II GAGCTC 1 cut(s) 423
EclXI CGGCCG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 425
Eco52I CGGCCG 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 114, 580
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 5 cut(s) 68, 109, 223, 349, 409
FaiI YATR 9 cut(s) 66, 107, 221, 292, 294, 347, 407, 446, 605
FatI CATG 5 cut(s) 64, 105, 219, 345, 405
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 21, 373
FokI GGATG 2 cut(s) 236, 321
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 21, 373
GluI GCNGC 2 cut(s) 21, 373
HaeIII GGCC 2 cut(s) 20, 509
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 12
Hin1II CATG 5 cut(s) 68, 109, 223, 349, 409
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 17
HphI GGTGA 2 cut(s) 76, 334
Hpy166II GTNNAC 4 cut(s) 172, 342, 389, 434
Hpy188I TCNGA 1 cut(s) 630
Hpy188III TCNNGA 3 cut(s) 519, 593, 666
Hpy8I GTNNAC 4 cut(s) 172, 342, 389, 434
Hpy99I CGWCG 2 cut(s) 28, 560
HpyCH4III ACNGT 4 cut(s) 88, 136, 194, 514
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 7 cut(s) 274, 290, 389, 434, 477, 492, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 5 cut(s) 68, 109, 223, 349, 409
Kzo9I GATC 6 cut(s) 98, 356, 413, 589, 625, 654
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 1 cut(s) 384
MaeII ACGT 1 cut(s) 558
MalI GATC 6 cut(s) 100, 358, 415, 591, 627, 656
MboI GATC 6 cut(s) 98, 356, 413, 589, 625, 654
MboII GAAGA 7 cut(s) 68, 106, 199, 246, 314, 480, 652
MflI RGATCY 2 cut(s) 98, 413
MhlI GDGCHC 4 cut(s) 84, 391, 425, 436
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 7 cut(s) 153, 175, 480, 535, 596, 600, 615
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 8 cut(s) 81, 177, 197, 200, 260, 290, 391, 404
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 1 cut(s) 292
MroXI GAANNNNTTC 2 cut(s) 39, 60
MscI TGGCCA 1 cut(s) 509
MseI TTAA 2 cut(s) 450, 599
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 116, 582
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 116, 582
MvnI CGCG 2 cut(s) 23, 150
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 6 cut(s) 98, 356, 413, 589, 625, 654
NlaIII CATG 5 cut(s) 68, 109, 223, 349, 409
NlaIV GGNNCC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 229
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 39, 60
PkrI GCNGC 2 cut(s) 22, 374
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PshBI ATTAAT 1 cut(s) 599
Psp124BI GAGCTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 114, 580
PspGI CCWGG 2 cut(s) 114, 580
PspN4I GGNNCC 1 cut(s) 415
PsuI RGATCY 2 cut(s) 98, 413
PvuII CAGCTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 425
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 450, 599
SatI GCNGC 2 cut(s) 21, 373
Sau3AI GATC 6 cut(s) 98, 356, 413, 589, 625, 654
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 116, 582
SduI GDGCHC 4 cut(s) 84, 391, 425, 436
Sse9I AATT 7 cut(s) 153, 175, 480, 535, 596, 600, 615
SsiI CCGC 2 cut(s) 21, 150
SstI GAGCTC 1 cut(s) 425
StyD4I CCNGG 2 cut(s) 114, 580
TaaI ACNGT 4 cut(s) 88, 136, 194, 514
TaiI ACGT 1 cut(s) 561
TaqI TCGA 4 cut(s) 5, 166, 182, 425
TasI AATT 7 cut(s) 153, 175, 480, 535, 596, 600, 615
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 450, 599
Tru9I TTAA 2 cut(s) 450, 599
TscAI CASTG 3 cut(s) 141, 499, 517
TseI GCWGC 1 cut(s) 372
TspDTI ATGAA 5 cut(s) 32, 53, 362, 394, 433
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 3 cut(s) 141, 499, 517
VneI GTGCAC 2 cut(s) 387, 432
VspI ATTAAT 1 cut(s) 599
XapI RAATTY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 2 cut(s) 39, 60
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.