FvH4_6g09310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016361
Physical Location & Seq
Forward (+)
5520064 .. 5522116
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09310.t1

Sequence Viewer

Length: 1173 bp
ATGGAAGGAATGAGTTACAGTACTCTGCGAGAACTGGGATGTGGAGGAAGCTTCTCCTTCAGCTGCTCCGACTCCGACTTGAACTTCTCCTCCGCGCTCTCCCATTTCACCGACGACGTCGGCGATGATGTTGTTGAAGCAGACGATAGTAGTGACGTCGACGATGAAGAATCATACATCGAAATAGCACTCGATCATCATCATCACCATCCTAAAGCAACTCATGAGGATTGTGATGGAGACAGGTCAGACCATGTCGATTACTTGCGCATATCTTTCTCGTCGACCTTTCCCTTCCCGGACTTCTCCAACCACACCAACCCTAATACTCAAGACGACACGAACATCGTCTCCGATACGACTACTGACCCAGCTGCAGTAGTAACGCAGGCAGCAGCATCTTCATCATCCACGCCAATATCAGCGTCGTCGTCCACCTCATTGGAAGACTTTGGGGGATCCAATCATGATGTTAGAACCAAAAGGTCGAAATTGCCGGCTGTCAACCGCATAGTCAATACTTTGTTCTTTAGTCTCTGGTCATCGTCCGACACCACCGCCAAGAAAGCTAGTGGTGCTGAGGAGCATTATAGTATTCGTCATCGCCAATCGCAAGTGGACAACGGTGACTTCGTACAGTCCAGGAAAGTATCAAACATGAAAACCACAGTCAACGGCGGCATCATGAAGTTGATTTTCAAGTTTCGAGCTATGAATCTTGGAACTTTGGTAGCTTCATTTGTGAAACCCCGAAAAGTTGTTTGTCCTCCTGATCAAGAGTACTGTCATTTTAGTTACGGAGTACGCAAGAAAAAGAAATCAAAAGCTCAGTCGACTCTTCAACATCAGAAGCCCTTGGACAAATTCTTCGTACAAAAGGAGCAGCAGAAAAAACAAGTCAAGATGGACACTTCACGAGAGGTAGGAGGAGGAGGCGAGAAATCCAGAGTGTTGGAGAAAAACTTAAATGCATTTAGAGGGGTTTTAGAAGCTATAGGAAGTAGTATGAGCACAGGCGTTAACCGCAAAGAAAGAAGAACAAGGAGCTGCCCAAGTTCTATCAAGTCCTCCCCAATTCATAAAGAATTTGCAGGAGGTGATCAGAGTAAAATATTTGCAAGAGAAACCTCAATTCAAGCTGCAATTGCCCATTGTAAATTTTCATTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

391

Amino Acids

42.99

Weight (kDa)

6.76

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09310
malus_domestica MD12G1194100.v1.1
prunus_persica Prupe.6G298800_v2.0.a1
pyrus_communis pycom04g15810 pycom12g18030
rosa_chinensis RchiOBHm_Chr3g0459701
rosa_laevigata RLG00000025066
rosa_multiflora Rmu_sc0000240.1_g000023
rosa_roxburghii Rroxscaffold_6G00420070
rosa_rugosa Rorug03G0037500 Rorug03G0037600
rosa_samantha Rh3AG096100 Rh3BG098800 Rh3CG100700 Rh3DG100100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 120, 159
Acc16I TGCGCA 1 cut(s) 269
AccI GTMKAC 3 cut(s) 159, 284, 833
AccII CGCG 1 cut(s) 95
AciI CCGC 5 cut(s) 93, 508, 558, 678, 1024
AclWI GGATC 2 cut(s) 453, 466
AcsI RAATTY 3 cut(s) 863, 1085, 1157
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 2 cut(s) 117, 156
AfaI GTAC 5 cut(s) 22, 636, 782, 804, 873
AgsI TTSAA 5 cut(s) 82, 137, 700, 842, 1136
AjnI CCWGG 1 cut(s) 641
AloI GAACNNNNNNTCC 4 cut(s) 74, 106, 335, 367
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 3 cut(s) 234, 355, 539
AlwI GGATC 2 cut(s) 453, 466
ApeKI GCWGC 7 cut(s) 63, 374, 392, 395, 883, 1047, 1139
ApoI RAATTY 3 cut(s) 863, 1085, 1157
ArsI GACNNNNNNTTYG 4 cut(s) 815, 847, 851, 883
AspLEI GCGC 2 cut(s) 97, 270
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 4 cut(s) 100, 197, 638, 1109
BamHI GGATCC 1 cut(s) 458
BauI CACGAG 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 1013
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 7 cut(s) 50, 361, 404, 407, 895, 1034, 1126
BccI CCATC 3 cut(s) 216, 230, 898
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 1 cut(s) 643
BclI TGATCA 2 cut(s) 772, 1099
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 234, 355, 539
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 2 cut(s) 375, 993
BisI GCNGC 8 cut(s) 64, 375, 393, 396, 679, 884, 1048, 1140
BlsI GCNGC 8 cut(s) 65, 376, 394, 397, 680, 885, 1049, 1141
BmcAI AGTACT 2 cut(s) 22, 782
Bme1390I CCNGG 2 cut(s) 299, 643
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 2 cut(s) 299, 643
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 407, 690
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 2 cut(s) 117, 156
BsaJI CCNNGG 1 cut(s) 855
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 335, 365
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 643
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 3 cut(s) 44, 208, 407
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 2 cut(s) 570, 842
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 4 cut(s) 79, 596, 942, 945
BseXI GCAGC 7 cut(s) 50, 361, 404, 407, 895, 1034, 1126
BseYI CCCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 1013
BsiSI CCGG 2 cut(s) 299, 497
BsmAI GTCTC 3 cut(s) 234, 355, 539
BsmBI CGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 1013
Bsp143I GATC 4 cut(s) 193, 458, 772, 1099
BspACI CCGC 5 cut(s) 93, 508, 558, 678, 1024
BspCNI CTCAG 2 cut(s) 571, 841
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 3 cut(s) 223, 466, 684
BspLI GGNNCC 1 cut(s) 460
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 2 cut(s) 453, 466
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 4 cut(s) 193, 458, 772, 1099
BssNI GRCGYC 2 cut(s) 117, 156
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 1 cut(s) 855
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 5 cut(s) 20, 626, 639, 670, 785
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 2 cut(s) 117, 156
BstC8I GCNNGC 2 cut(s) 390, 498
BstDEI CTNAG 2 cut(s) 579, 828
BstF5I GGATG 3 cut(s) 44, 208, 407
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 2 cut(s) 97, 270
BstKTI GATC 4 cut(s) 196, 461, 775, 1102
BstMAI GTCTC 3 cut(s) 234, 355, 539
BstMBI GATC 4 cut(s) 193, 458, 772, 1099
BstMWI GCNNNNNNNGC 4 cut(s) 566, 575, 1023, 1145
BstNI CCWGG 1 cut(s) 643
BstSCI CCNGG 2 cut(s) 297, 641
BstSFI CTRYAG 2 cut(s) 375, 993
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 7 cut(s) 50, 361, 404, 407, 895, 1034, 1126
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 458
BstXI CCANNNNNNTGG 2 cut(s) 442, 952
BstYI RGATCY 1 cut(s) 458
BtgZI GCGATG 2 cut(s) 138, 587
BtsCI GGATG 3 cut(s) 44, 208, 407
Cac8I GCNNGC 2 cut(s) 390, 498
CciI TCATGA 3 cut(s) 223, 466, 684
CfoI GCGC 2 cut(s) 97, 270
Cfr10I RCCGGY 1 cut(s) 496
CseI GACGC 1 cut(s) 414
Csp6I GTAC 5 cut(s) 21, 635, 781, 803, 872
CviAII CATG 5 cut(s) 224, 254, 467, 658, 685
CviQI GTAC 5 cut(s) 21, 635, 781, 803, 872
DdeI CTNAG 2 cut(s) 579, 828
DpnI GATC 4 cut(s) 195, 460, 774, 1101
DpnII GATC 4 cut(s) 193, 458, 772, 1099
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 641
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 973
ErhI CCWWGG 1 cut(s) 855
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 5 cut(s) 227, 257, 470, 661, 688
FatI CATG 5 cut(s) 223, 253, 466, 657, 684
FbaI TGATCA 2 cut(s) 772, 1099
FblI GTMKAC 3 cut(s) 159, 284, 833
Fnu4HI GCNGC 8 cut(s) 64, 375, 393, 396, 679, 884, 1048, 1140
FokI GGATG 3 cut(s) 51, 195, 394
Fsp4HI GCNGC 8 cut(s) 64, 375, 393, 396, 679, 884, 1048, 1140
FspBI CTAG 1 cut(s) 570
FspI TGCGCA 1 cut(s) 269
GlaI GCGC 2 cut(s) 96, 269
GluI GCNGC 8 cut(s) 64, 375, 393, 396, 679, 884, 1048, 1140
GsaI CCCAGC 1 cut(s) 374
HapII CCGG 2 cut(s) 299, 497
HgaI GACGC 1 cut(s) 414
HhaI GCGC 2 cut(s) 97, 270
Hin1I GRCGYC 2 cut(s) 117, 156
Hin1II CATG 5 cut(s) 227, 257, 470, 661, 688
Hin6I GCGC 2 cut(s) 95, 268
HinP1I GCGC 2 cut(s) 95, 268
HincII GTYRAC 6 cut(s) 160, 285, 505, 673, 834, 1021
HindII GTYRAC 6 cut(s) 160, 285, 505, 673, 834, 1021
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 4 cut(s) 71, 170, 715, 835
HpaI GTTAAC 1 cut(s) 1021
HpaII CCGG 2 cut(s) 299, 497
HphI GGTGA 4 cut(s) 100, 197, 638, 1109
Hpy166II GTNNAC 8 cut(s) 160, 285, 435, 505, 619, 673, 834, 1021
Hpy188I TCNGA 7 cut(s) 70, 76, 250, 355, 550, 849, 1104
Hpy188III TCNNGA 9 cut(s) 224, 332, 467, 685, 770, 776, 901, 915, 945
Hpy8I GTNNAC 8 cut(s) 160, 285, 435, 505, 619, 673, 834, 1021
Hpy99I CGWCG 8 cut(s) 116, 119, 122, 161, 164, 286, 430, 433
HpyAV CCTTC 2 cut(s) 67, 304
HpyCH4III ACNGT 5 cut(s) 20, 626, 639, 670, 785
HpyCH4IV ACGT 2 cut(s) 117, 156
HpyCH4V TGCA 5 cut(s) 377, 971, 1091, 1118, 1142
HpyF10VI GCNNNNNNNGC 4 cut(s) 566, 575, 1023, 1145
HpyF3I CTNAG 2 cut(s) 579, 828
HpySE526I ACGT 2 cut(s) 117, 156
Hsp92I GRCGYC 2 cut(s) 117, 156
Hsp92II CATG 5 cut(s) 227, 257, 470, 661, 688
HspAI GCGC 2 cut(s) 95, 268
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
Ksp22I TGATCA 2 cut(s) 772, 1099
KspAI GTTAAC 1 cut(s) 1021
Kzo9I GATC 4 cut(s) 193, 458, 772, 1099
LmnI GCTCC 4 cut(s) 71, 583, 880, 1044
Lsp1109I GCAGC 7 cut(s) 50, 361, 404, 407, 895, 1034, 1126
LweI GCATC 2 cut(s) 407, 690
MaeI CTAG 1 cut(s) 570
MaeII ACGT 2 cut(s) 117, 156
MaeIII GTNAC 5 cut(s) 14, 152, 382, 626, 794
MalI GATC 4 cut(s) 195, 460, 774, 1101
MboI GATC 4 cut(s) 193, 458, 772, 1099
MboII GAAGA 6 cut(s) 179, 393, 458, 830, 859, 1047
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 1013
MluCI AATT 7 cut(s) 491, 863, 1074, 1085, 1131, 1143, 1157
MlyI GAGTC 2 cut(s) 65, 829
MmeI TCCRAC 5 cut(s) 93, 99, 333, 573, 933
Mph1103I ATGCAT 1 cut(s) 973
MroNI GCCGGC 1 cut(s) 496
MseI TTAA 2 cut(s) 965, 1020
MspA1I CMGCKG 2 cut(s) 63, 374
MspI CCGG 2 cut(s) 299, 497
MspR9I CCNGG 2 cut(s) 299, 643
MunI CAATTG 1 cut(s) 1143
MvaI CCWGG 1 cut(s) 643
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 566, 575, 1023, 1145
NaeI GCCGGC 1 cut(s) 498
NciI CCSGG 1 cut(s) 299
NdeII GATC 4 cut(s) 193, 458, 772, 1099
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 5 cut(s) 227, 257, 470, 661, 688
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 152, 626
NsbI TGCGCA 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 973
PagI TCATGA 3 cut(s) 223, 466, 684
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 630
PdiI GCCGGC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 170, 715
PflFI GACNNNGTC 2 cut(s) 116, 254
PfoI TCCNGGA 2 cut(s) 297, 641
PkrI GCNGC 8 cut(s) 65, 376, 394, 397, 680, 885, 1049, 1141
PleI GAGTC 2 cut(s) 65, 829
PpsI GAGTC 2 cut(s) 65, 829
Psp6I CCWGG 1 cut(s) 641
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 460
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 458
PsyI GACNNNGTC 2 cut(s) 116, 254
PvuII CAGCTG 2 cut(s) 63, 374
RsaI GTAC 5 cut(s) 22, 636, 782, 804, 873
RsaNI GTAC 5 cut(s) 21, 635, 781, 803, 872
SalI GTCGAC 3 cut(s) 158, 283, 832
SaqAI TTAA 2 cut(s) 965, 1020
SatI GCNGC 8 cut(s) 64, 375, 393, 396, 679, 884, 1048, 1140
Sau3AI GATC 4 cut(s) 193, 458, 772, 1099
ScaI AGTACT 2 cut(s) 22, 782
SchI GAGTC 2 cut(s) 65, 829
ScrFI CCNGG 2 cut(s) 299, 643
SduI GDGCHC 1 cut(s) 1013
SfaNI GCATC 2 cut(s) 407, 690
SfcI CTRYAG 2 cut(s) 375, 993
SgrDI CGTCGACG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 7 cut(s) 491, 863, 1074, 1085, 1131, 1143, 1157
SsiI CCGC 5 cut(s) 93, 508, 558, 678, 1024
SspI AATATT 1 cut(s) 1113
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 297, 641
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 5 cut(s) 20, 626, 639, 670, 785
TaiI ACGT 2 cut(s) 120, 159
TaqI TCGA 8 cut(s) 159, 180, 192, 258, 284, 488, 706, 833
TasI AATT 7 cut(s) 491, 863, 1074, 1085, 1131, 1143, 1157
TatI WGTACW 2 cut(s) 20, 780
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 2 cut(s) 170, 715
Tru1I TTAA 2 cut(s) 965, 1020
Tru9I TTAA 2 cut(s) 965, 1020
TseFI GTSAC 2 cut(s) 152, 626
TseI GCWGC 7 cut(s) 63, 374, 392, 395, 883, 1047, 1139
Tsp45I GTSAC 2 cut(s) 152, 626
TspDTI ATGAA 8 cut(s) 180, 393, 674, 701, 726, 728, 1067, 1152
TspGWI ACGGA 1 cut(s) 813
Tth111I GACNNNGTC 2 cut(s) 116, 254
XapI RAATTY 3 cut(s) 863, 1085, 1157
XmiI GTMKAC 3 cut(s) 159, 284, 833
XspI CTAG 1 cut(s) 570
ZraI GACGTC 2 cut(s) 118, 157
ZrmI AGTACT 2 cut(s) 22, 782
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.