Rh3BG098800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016361
Physical Location & Seq
Forward (+)
7876455 .. 7878583
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG098800.1

Sequence Viewer

Length: 1173 bp
ATGGAAAGAATGAGTTGTAGTACTCTGCGAGATCTGGGCTGTGGAGGAAGCTTCTCCTTCAGCTGCTCCGACTCCGACTTAAACTTCTCCTCTGCCCTCTCCCATTTCACCGACGATGTCGGTGATGATGTTGTTGAAGAGGACGATGATAGTGACGTCGACGATGAAGAATCATACATCGAAATAGCACTGGATCAACACCATCCTAAAGCAAGCCATGATGATGGTGATGGAGACCGGTTAGACCATGTCAATTACTTGCGCATATCGTTTTCGTCAAGCTTTCCCTTCCCAGACTTCTCCAACCACACCACCAACCCTAATACTCAAGACGACAGGAACATCGTCTCCGAGACGACGACTACTGACCCAGCTGGAGCAGTAAAGCAGGCAGCATCATCTTCATCAATGACGTCAATATCAGCGTTGTCCACCTCAATGGAAGACTTTAGAGGCTCTGATCATGATGTTAGATCCAAAAGGTCGAAATTGCCGGCAGTCAACCGCCTAGTCAATACGTTGTTCTTTAGTCTTTGGTCATCGTCGGACGCCACCGCCAAGAAAGTTAGTGGTGCTCAGGACCATTATAATATTAGTCATCCCCAATTGCACGTGGACAACGATGACTTCGTACAGAACAGGAAAGTATCAAACATAAAAACCACAGTCAATGGCGGCATCATGAAGTTGCTTTTCAAGTTTCGAGCTATGAATCTTGGAACTCTGGTAGCTTCATTTGTGAAACCCCGAAAAGTTGTTTGTCCTCCTGATCAAGAGTACTGCCATTTTAGTAACGGAGTACGCAAGAACAAGAAATCAAAAGCTCAGTCGACTCTTCAGAATCAGAAGCCCTTAGACAAATTCTTTGTACAAAAGAAGCAGCAGGGAAAGGGTGTCAAGATGGACTCTTCACGAGAGGTAGGAGGCGGTGAGAAATCAAGAGTGTTGGAGAAAAACTTGAACTCAGTTAGAGGGGTTTTAGAAGCTATAGGAAGTAGTATGAGCACAGGCGTTAACCGCAAAGAAAGAAGAACGAGGAGCTGCCCAAGTTCTATCAAGTCCTCTCCAATTCATAAAGAATTTGCAGGTGATCAGAGTAAAGTATTTGCAAGAGAAACCTCAATTCAGGCTGCAATTGCCCATTGTAAAATTTCATTTGAACAAATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

43.01

Weight (kDa)

6.67

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09310
malus_domestica MD12G1194100.v1.1
prunus_persica Prupe.6G298800_v2.0.a1
pyrus_communis pycom04g15810 pycom12g18030
rosa_chinensis RchiOBHm_Chr3g0459701
rosa_laevigata RLG00000025066
rosa_multiflora Rmu_sc0000240.1_g000023
rosa_roxburghii Rroxscaffold_6G00420070
rosa_rugosa Rorug03G0037500 Rorug03G0037600
rosa_samantha Rh3AG096100 Rh3BG098800 Rh3CG100700 Rh3DG100100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AarI CACCTGC 1 cut(s) 1076
AatII GACGTC 2 cut(s) 159, 416
Acc16I TGCGCA 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 1076
AccI GTMKAC 2 cut(s) 159, 830
AciI CCGC 5 cut(s) 505, 555, 675, 927, 1018
AclWI GGATC 2 cut(s) 201, 468
AcsI RAATTY 3 cut(s) 860, 1079, 1149
AcuI CTGAAG 2 cut(s) 43, 821
AcvI CACGTG 1 cut(s) 613
AcyI GRCGYC 3 cut(s) 156, 413, 549
AfaI GTAC 5 cut(s) 22, 633, 779, 801, 870
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 4 cut(s) 137, 697, 961, 1160
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 9 cut(s) 51, 63, 282, 374, 707, 731, 824, 986, 1041
AluI AGCT 9 cut(s) 51, 63, 282, 374, 707, 731, 824, 986, 1041
Alw21I GWGCWC 2 cut(s) 577, 1007
Alw26I GTCTC 3 cut(s) 228, 347, 352
AlwI GGATC 2 cut(s) 201, 468
ApeKI GCWGC 5 cut(s) 63, 392, 880, 1041, 1130
ApoI RAATTY 3 cut(s) 860, 1079, 1149
ArsI GACNNNNNNTTYG 4 cut(s) 812, 844, 848, 880
AsiGI ACCGGT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 5 cut(s) 100, 134, 239, 941, 1100
AvaII GGWCC 1 cut(s) 580
BauI CACGAG 1 cut(s) 912
BbrPI CACGTG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 577, 1007
BbvI GCAGC 5 cut(s) 50, 404, 892, 1028, 1117
BccI CCATC 4 cut(s) 210, 218, 224, 895
BclI TGATCA 3 cut(s) 460, 769, 1090
BcoDI GTCTC 3 cut(s) 228, 347, 352
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 987
BfuAI ACCTGC 1 cut(s) 1076
BglII AGATCT 1 cut(s) 31
BisI GCNGC 6 cut(s) 64, 393, 676, 881, 1042, 1131
BlsI GCNGC 6 cut(s) 65, 394, 677, 882, 1043, 1132
BmcAI AGTACT 2 cut(s) 22, 779
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 580
BmsI GCATC 2 cut(s) 404, 687
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 613
BsaHI GRCGYC 3 cut(s) 156, 413, 549
BsaI GGTCTC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bse118I RCCGGY 2 cut(s) 237, 493
Bse1I ACTGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 202, 598
BseMII CTCAG 3 cut(s) 590, 839, 978
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 2 cut(s) 79, 1051
BseXI GCAGC 5 cut(s) 50, 404, 892, 1028, 1117
BseYI CCCAGC 1 cut(s) 370
BshTI ACCGGT 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 577, 1007
BsiSI CCGG 2 cut(s) 238, 494
BsmAI GTCTC 3 cut(s) 228, 347, 352
BsmBI CGTCTC 2 cut(s) 347, 352
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 577, 1007
Bsp1407I TGTACA 1 cut(s) 868
Bsp143I GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
BspACI CCGC 5 cut(s) 505, 555, 675, 927, 1018
BspCNI CTCAG 3 cut(s) 589, 838, 977
BspHI TCATGA 2 cut(s) 463, 681
BspMI ACCTGC 1 cut(s) 1076
BspPI GGATC 2 cut(s) 201, 468
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 2 cut(s) 237, 493
BsrGI TGTACA 1 cut(s) 868
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 2 cut(s) 237, 493
BssMI GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
BssNI GRCGYC 3 cut(s) 156, 413, 549
BssSI CACGAG 1 cut(s) 912
Bst2BI CACGAG 1 cut(s) 912
Bst4CI ACNGT 1 cut(s) 667
Bst6I CTCTTC 3 cut(s) 132, 840, 913
BstACI GRCGYC 3 cut(s) 156, 413, 549
BstAUI TGTACA 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 3 cut(s) 214, 390, 495
BstDEI CTNAG 4 cut(s) 576, 825, 853, 964
BstF5I GGATG 2 cut(s) 202, 598
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 6 cut(s) 34, 196, 463, 476, 772, 1093
BstMAI GTCTC 3 cut(s) 228, 347, 352
BstMBI GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 1017, 1136
BstSFI CTRYAG 1 cut(s) 987
BstV1I GCAGC 5 cut(s) 50, 404, 892, 1028, 1117
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 2 cut(s) 31, 473
BstXI CCANNNNNNTGG 2 cut(s) 224, 439
BstYI RGATCY 2 cut(s) 31, 473
BtsCI GGATG 2 cut(s) 202, 598
BtsIMutI CAGTG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 1076
Cac8I GCNNGC 3 cut(s) 214, 390, 495
CciI TCATGA 2 cut(s) 463, 681
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 2 cut(s) 237, 493
Cfr13I GGNCC 1 cut(s) 580
CseI GACGC 1 cut(s) 557
Csp6I GTAC 5 cut(s) 21, 632, 778, 800, 869
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 4 cut(s) 218, 248, 464, 682
CviQI GTAC 5 cut(s) 21, 632, 778, 800, 869
DdeI CTNAG 4 cut(s) 576, 825, 853, 964
DpnI GATC 6 cut(s) 33, 195, 462, 475, 771, 1092
DpnII GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
Eam1104I CTCTTC 3 cut(s) 132, 840, 913
EarI CTCTTC 3 cut(s) 132, 840, 913
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 43, 821
Eco72I CACGTG 1 cut(s) 613
Esp3I CGTCTC 2 cut(s) 347, 352
FaeI CATG 4 cut(s) 221, 251, 467, 685
FatI CATG 4 cut(s) 217, 247, 463, 681
FbaI TGATCA 3 cut(s) 460, 769, 1090
FblI GTMKAC 2 cut(s) 159, 830
Fnu4HI GCNGC 6 cut(s) 64, 393, 676, 881, 1042, 1131
FokI GGATG 2 cut(s) 189, 585
Fsp4HI GCNGC 6 cut(s) 64, 393, 676, 881, 1042, 1131
FspBI CTAG 1 cut(s) 509
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 1 cut(s) 263
GluI GCNGC 6 cut(s) 64, 393, 676, 881, 1042, 1131
GsaI CCCAGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 2 cut(s) 238, 494
HgaI GACGC 1 cut(s) 557
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 3 cut(s) 156, 413, 549
Hin1II CATG 4 cut(s) 221, 251, 467, 685
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 4 cut(s) 160, 502, 831, 1015
HindII GTYRAC 4 cut(s) 160, 502, 831, 1015
HindIII AAGCTT 2 cut(s) 49, 280
HinfI GANTC 6 cut(s) 71, 170, 712, 832, 841, 905
HpaI GTTAAC 1 cut(s) 1015
HpaII CCGG 2 cut(s) 238, 494
HphI GGTGA 5 cut(s) 100, 134, 239, 941, 1100
Hpy166II GTNNAC 6 cut(s) 160, 432, 502, 616, 831, 1015
Hpy188I TCNGA 8 cut(s) 70, 76, 352, 460, 547, 840, 846, 1095
Hpy8I GTNNAC 6 cut(s) 160, 432, 502, 616, 831, 1015
Hpy99I CGWCG 5 cut(s) 116, 161, 164, 361, 547
HpyAV CCTTC 2 cut(s) 67, 298
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 4 cut(s) 156, 413, 518, 612
HpyCH4V TGCA 4 cut(s) 610, 1085, 1109, 1133
HpyF10VI GCNNNNNNNGC 2 cut(s) 1017, 1136
HpyF3I CTNAG 4 cut(s) 576, 825, 853, 964
HpySE526I ACGT 4 cut(s) 156, 413, 518, 612
Hsp92I GRCGYC 3 cut(s) 156, 413, 549
Hsp92II CATG 4 cut(s) 221, 251, 467, 685
HspAI GCGC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 493
KroNI GCCGGC 1 cut(s) 495
Ksp22I TGATCA 3 cut(s) 460, 769, 1090
KspAI GTTAAC 1 cut(s) 1015
Kzo9I GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
LmnI GCTCC 3 cut(s) 71, 377, 1038
Lsp1109I GCAGC 5 cut(s) 50, 404, 892, 1028, 1117
LweI GCATC 2 cut(s) 404, 687
MaeI CTAG 1 cut(s) 509
MaeII ACGT 4 cut(s) 156, 413, 518, 612
MaeIII GTNAC 2 cut(s) 152, 791
MalI GATC 6 cut(s) 33, 195, 462, 475, 771, 1092
MboI GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
MboII GAAGA 7 cut(s) 149, 179, 393, 455, 827, 900, 1041
MfeI CAATTG 2 cut(s) 605, 1134
MflI RGATCY 2 cut(s) 31, 473
MhlI GDGCHC 2 cut(s) 577, 1007
MluCI AATT 9 cut(s) 253, 488, 605, 860, 1068, 1079, 1122, 1134, 1149
MlyI GAGTC 3 cut(s) 65, 826, 899
MmeI TCCRAC 5 cut(s) 93, 99, 327, 525, 927
MroNI GCCGGC 1 cut(s) 493
MseI TTAA 2 cut(s) 80, 1014
MslI CAYNNNNRTG 2 cut(s) 222, 437
MspA1I CMGCKG 2 cut(s) 63, 374
MspI CCGG 2 cut(s) 238, 494
MunI CAATTG 2 cut(s) 605, 1134
MwoI GCNNNNNNNGC 2 cut(s) 1017, 1136
NaeI GCCGGC 1 cut(s) 495
NdeII GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
NgoMIV GCCGGC 1 cut(s) 493
NlaIII CATG 4 cut(s) 221, 251, 467, 685
NmuCI GTSAC 1 cut(s) 152
NsbI TGCGCA 1 cut(s) 263
PagI TCATGA 2 cut(s) 463, 681
PaqCI CACCTGC 1 cut(s) 1076
PcsI WCGNNNNNNNCGW 2 cut(s) 618, 627
PdiI GCCGGC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 170, 712, 841
PflFI GACNNNGTC 2 cut(s) 116, 248
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 6 cut(s) 65, 394, 677, 882, 1043, 1132
PleI GAGTC 3 cut(s) 65, 826, 899
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 3 cut(s) 65, 826, 899
Ppu21I YACGTR 1 cut(s) 613
PsiI TTATAA 1 cut(s) 588
PspCI CACGTG 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 580
PsuI RGATCY 2 cut(s) 31, 473
PsyI GACNNNGTC 2 cut(s) 116, 248
PvuII CAGCTG 2 cut(s) 63, 374
RsaI GTAC 5 cut(s) 22, 633, 779, 801, 870
RsaNI GTAC 5 cut(s) 21, 632, 778, 800, 869
RseI CAYNNNNRTG 2 cut(s) 222, 437
SalI GTCGAC 2 cut(s) 158, 829
SaqAI TTAA 2 cut(s) 80, 1014
SatI GCNGC 6 cut(s) 64, 393, 676, 881, 1042, 1131
Sau3AI GATC 6 cut(s) 31, 193, 460, 473, 769, 1090
Sau96I GGNCC 1 cut(s) 580
ScaI AGTACT 2 cut(s) 22, 779
SchI GAGTC 3 cut(s) 65, 826, 899
SduI GDGCHC 2 cut(s) 577, 1007
SfaNI GCATC 2 cut(s) 404, 687
SfcI CTRYAG 1 cut(s) 987
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 1 cut(s) 580
SmiMI CAYNNNNRTG 2 cut(s) 222, 437
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 9 cut(s) 253, 488, 605, 860, 1068, 1079, 1122, 1134, 1149
SsiI CCGC 5 cut(s) 505, 555, 675, 927, 1018
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 509
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 4 cut(s) 159, 416, 521, 615
TaqI TCGA 5 cut(s) 159, 180, 485, 703, 830
TasI AATT 9 cut(s) 253, 488, 605, 860, 1068, 1079, 1122, 1134, 1149
TatI WGTACW 3 cut(s) 20, 777, 868
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 3 cut(s) 170, 712, 841
Tru1I TTAA 2 cut(s) 80, 1014
Tru9I TTAA 2 cut(s) 80, 1014
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 5 cut(s) 63, 392, 880, 1041, 1130
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 180, 393, 698, 723, 725, 1061, 1143
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 2 cut(s) 116, 248
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 3 cut(s) 860, 1079, 1149
XmiI GTMKAC 2 cut(s) 159, 830
XspI CTAG 1 cut(s) 509
ZraI GACGTC 2 cut(s) 157, 414
ZrmI AGTACT 2 cut(s) 22, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.