Rroxscaffold_6G00420070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016361
Physical Location & Seq
Reverse (-)
41412820 .. 41414820
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420070.1

Sequence Viewer

Length: 1170 bp
ATGGAAAGAATGAGTTGCAGTACTCTGCGAGATCTGGGCTGTGGAGGAAGCTTCTCCTTTAGATGCTCCGACTCCGACTTAAACTTCTCCTCTGCCCTCTCCCATTTCACCGACGACGTCGGTGATGATGTTGTTGAAGAAGACGATGATAGTGACGTCGATGATGAAGAATCATACATCGAAATAGCACTGGATCAACACCATCCTAAAGCAAGCCATGATGATGGTGATGGAGACCGGTTAGACCATGTCAATTACTTGCGCATATCGTTTTCGTCAAGCTTTCCCTTCCCAGACTTCTCCAACCACACCACCAACCCTAATACTCAAGACGACACGAACATCGTCTCTGAGACGACTACTGACCCATCTGGAGCAGTAAAGCAGGCAGCATCATCTTCATCAATGACGTCAATATCAGCGTCGTCCACCTCAATGGAAGACTTTAGAGGCTCTGATCATGATATTAGAACCAAAAGGTCGAAATTGCCGGCAGTCAACCGCCTAGTCAATACGTTGTTCTTTAGTCTTTGGTCATCGTCGGACACCACCGCCAAGAAAGTTAGTGGTGCTCAGGACCATTATAATATTAGTCATCCCCAATTGCACGTGGACAACGACGACTTCGTACAGAACAGGAAAGTATCAAACATAAAAACCACGGTCAATGGCGGCATCATGAAGTTGCTTTTCAAGTTTCGAGCTATGAATCTTGGAACTTTGGTAGCTTCATTTGTGAAACCCCGAAAAGTTGTTTGTCCTCCTGATCAAGAGTACTGCCATTTTAGTAACGGAGTACGCAAAAACAAGAAATCAAAAGCTCAGTCGACTCTTCAGAATCCGAAGCCCTTAGACAAATTCTTCGTACAAAAGAAGCAGCAGGGAAAGCGTGTCAAGATGGACTCTTCACGAGAGGTAGGAGGCGGTGAGAAATCAAGAGTGTTGGAGAAAAACTTGAACGCAGTTAGAGGGGTTTTAGAAGCTATAGGAAGTAGTATGAGCACAGGCGTTAACCGCAAAGAAAGAAGAACGAGGAGCTGCCCAAGTTCTATCAAGTCCTCTCCAATTCATAAAGAATTTGCAAGTGATCAGAGTAAAGTATTTGCAAGAGAAACCTCAATTCAGGCTGCAATTGCCCATTGTAAAATTTCATTTGAACAAATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

43.06

Weight (kDa)

6.9

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09310
malus_domestica MD12G1194100.v1.1
prunus_persica Prupe.6G298800_v2.0.a1
pyrus_communis pycom04g15810 pycom12g18030
rosa_chinensis RchiOBHm_Chr3g0459701
rosa_laevigata RLG00000025066
rosa_multiflora Rmu_sc0000240.1_g000023
rosa_roxburghii Rroxscaffold_6G00420070
rosa_rugosa Rorug03G0037500 Rorug03G0037600
rosa_samantha Rh3AG096100 Rh3BG098800 Rh3CG100700 Rh3DG100100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AatII GACGTC 3 cut(s) 120, 159, 413
Acc16I TGCGCA 1 cut(s) 263
AccI GTMKAC 1 cut(s) 827
AciI CCGC 5 cut(s) 502, 552, 672, 924, 1015
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 3 cut(s) 857, 1076, 1146
AcuI CTGAAG 1 cut(s) 818
AcvI CACGTG 1 cut(s) 610
AcyI GRCGYC 3 cut(s) 117, 156, 410
AfaI GTAC 5 cut(s) 22, 630, 776, 798, 867
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 4 cut(s) 137, 694, 958, 1157
AluBI AGCT 7 cut(s) 51, 282, 704, 728, 821, 983, 1038
AluI AGCT 7 cut(s) 51, 282, 704, 728, 821, 983, 1038
Alw21I GWGCWC 2 cut(s) 574, 1004
Alw26I GTCTC 3 cut(s) 228, 347, 352
AlwI GGATC 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 389, 877, 1038, 1127
ApoI RAATTY 3 cut(s) 857, 1076, 1146
ArsI GACNNNNNNTTYG 4 cut(s) 809, 841, 845, 877
AsiGI ACCGGT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 577
AsuHPI GGTGA 4 cut(s) 100, 134, 239, 938
AvaII GGWCC 1 cut(s) 577
BauI CACGAG 1 cut(s) 909
BbrPI CACGTG 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 147, 447
Bbv12I GWGCWC 2 cut(s) 574, 1004
BbvI GCAGC 4 cut(s) 401, 889, 1025, 1114
BccI CCATC 5 cut(s) 210, 218, 224, 376, 892
BclI TGATCA 3 cut(s) 457, 766, 1087
BcoDI GTCTC 3 cut(s) 228, 347, 352
BfaI CTAG 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 984
BglII AGATCT 1 cut(s) 31
BisI GCNGC 5 cut(s) 390, 673, 878, 1039, 1128
BlsI GCNGC 5 cut(s) 391, 674, 879, 1040, 1129
BmcAI AGTACT 2 cut(s) 22, 776
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmsI GCATC 3 cut(s) 53, 401, 684
BpiI GAAGAC 2 cut(s) 147, 447
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 610
BsaHI GRCGYC 3 cut(s) 117, 156, 410
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 237
Bse118I RCCGGY 2 cut(s) 237, 490
Bse1I ACTGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 2 cut(s) 202, 595
BseMII CTCAG 3 cut(s) 342, 587, 836
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 2 cut(s) 79, 1048
BseXI GCAGC 4 cut(s) 401, 889, 1025, 1114
BshTI ACCGGT 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 574, 1004
BsiSI CCGG 2 cut(s) 238, 491
BsmAI GTCTC 3 cut(s) 228, 347, 352
BsmBI CGTCTC 2 cut(s) 347, 352
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 574, 1004
Bsp143I GATC 5 cut(s) 31, 193, 457, 766, 1087
BspACI CCGC 5 cut(s) 502, 552, 672, 924, 1015
BspCNI CTCAG 3 cut(s) 343, 586, 835
BspHI TCATGA 2 cut(s) 460, 678
BspPI GGATC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 228
BsrFI RCCGGY 2 cut(s) 237, 490
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 2 cut(s) 237, 490
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 5 cut(s) 31, 193, 457, 766, 1087
BssNI GRCGYC 3 cut(s) 117, 156, 410
BssSI CACGAG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 909
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 837, 910
BstACI GRCGYC 3 cut(s) 117, 156, 410
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 3 cut(s) 214, 387, 492
BstDEI CTNAG 4 cut(s) 351, 573, 822, 850
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 202, 595
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 5 cut(s) 34, 196, 460, 769, 1090
BstMAI GTCTC 3 cut(s) 228, 347, 352
BstMBI GATC 5 cut(s) 31, 193, 457, 766, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 886, 1014, 1133
BstSFI CTRYAG 1 cut(s) 984
BstV1I GCAGC 4 cut(s) 401, 889, 1025, 1114
BstV2I GAAGAC 2 cut(s) 147, 447
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 2 cut(s) 224, 436
BstYI RGATCY 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 2 cut(s) 202, 595
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 3 cut(s) 214, 387, 492
CciI TCATGA 2 cut(s) 460, 678
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 2 cut(s) 237, 490
Cfr13I GGNCC 1 cut(s) 577
CseI GACGC 1 cut(s) 411
Csp6I GTAC 5 cut(s) 21, 629, 775, 797, 866
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 4 cut(s) 218, 248, 461, 679
CviQI GTAC 5 cut(s) 21, 629, 775, 797, 866
DdeI CTNAG 4 cut(s) 351, 573, 822, 850
DpnI GATC 5 cut(s) 33, 195, 459, 768, 1089
DpnII GATC 5 cut(s) 31, 193, 457, 766, 1087
Eam1104I CTCTTC 2 cut(s) 837, 910
EarI CTCTTC 2 cut(s) 837, 910
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 818
Eco72I CACGTG 1 cut(s) 610
Esp3I CGTCTC 2 cut(s) 347, 352
FaeI CATG 4 cut(s) 221, 251, 464, 682
FatI CATG 4 cut(s) 217, 247, 460, 678
FbaI TGATCA 3 cut(s) 457, 766, 1087
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 5 cut(s) 390, 673, 878, 1039, 1128
FokI GGATG 2 cut(s) 189, 582
Fsp4HI GCNGC 5 cut(s) 390, 673, 878, 1039, 1128
FspBI CTAG 1 cut(s) 506
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 1 cut(s) 263
GluI GCNGC 5 cut(s) 390, 673, 878, 1039, 1128
GsuI CTGGAG 1 cut(s) 393
HapII CCGG 2 cut(s) 238, 491
HgaI GACGC 1 cut(s) 411
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 3 cut(s) 117, 156, 410
Hin1II CATG 4 cut(s) 221, 251, 464, 682
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 3 cut(s) 499, 828, 1012
HindII GTYRAC 3 cut(s) 499, 828, 1012
HindIII AAGCTT 2 cut(s) 49, 280
HinfI GANTC 6 cut(s) 71, 170, 709, 829, 838, 902
HpaI GTTAAC 1 cut(s) 1012
HpaII CCGG 2 cut(s) 238, 491
HphI GGTGA 4 cut(s) 100, 134, 239, 938
Hpy166II GTNNAC 5 cut(s) 429, 499, 613, 828, 1012
Hpy188I TCNGA 8 cut(s) 70, 76, 352, 457, 544, 837, 843, 1092
Hpy8I GTNNAC 5 cut(s) 429, 499, 613, 828, 1012
Hpy99I CGWCG 7 cut(s) 116, 119, 122, 161, 427, 544, 623
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 5 cut(s) 117, 156, 410, 515, 609
HpyCH4V TGCA 5 cut(s) 18, 607, 1082, 1106, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 886, 1014, 1133
HpyF3I CTNAG 4 cut(s) 351, 573, 822, 850
HpySE526I ACGT 5 cut(s) 117, 156, 410, 515, 609
Hsp92I GRCGYC 3 cut(s) 117, 156, 410
Hsp92II CATG 4 cut(s) 221, 251, 464, 682
HspAI GCGC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Ksp22I TGATCA 3 cut(s) 457, 766, 1087
KspAI GTTAAC 1 cut(s) 1012
Kzo9I GATC 5 cut(s) 31, 193, 457, 766, 1087
LmnI GCTCC 3 cut(s) 71, 374, 1035
Lsp1109I GCAGC 4 cut(s) 401, 889, 1025, 1114
LweI GCATC 3 cut(s) 53, 401, 684
MaeI CTAG 1 cut(s) 506
MaeII ACGT 5 cut(s) 117, 156, 410, 515, 609
MaeIII GTNAC 2 cut(s) 152, 788
MalI GATC 5 cut(s) 33, 195, 459, 768, 1089
MboI GATC 5 cut(s) 31, 193, 457, 766, 1087
MboII GAAGA 9 cut(s) 149, 152, 179, 390, 452, 824, 853, 897, 1038
MfeI CAATTG 2 cut(s) 602, 1131
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 574, 1004
MluCI AATT 9 cut(s) 253, 485, 602, 857, 1065, 1076, 1119, 1131, 1146
MlyI GAGTC 3 cut(s) 65, 823, 896
MmeI TCCRAC 5 cut(s) 93, 99, 327, 522, 924
MroNI GCCGGC 1 cut(s) 490
MseI TTAA 2 cut(s) 80, 1011
MslI CAYNNNNRTG 2 cut(s) 222, 434
MspI CCGG 2 cut(s) 238, 491
MunI CAATTG 2 cut(s) 602, 1131
MwoI GCNNNNNNNGC 3 cut(s) 886, 1014, 1133
NaeI GCCGGC 1 cut(s) 492
NdeII GATC 5 cut(s) 31, 193, 457, 766, 1087
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 4 cut(s) 221, 251, 464, 682
NmuCI GTSAC 1 cut(s) 152
NsbI TGCGCA 1 cut(s) 263
PagI TCATGA 2 cut(s) 460, 678
PcsI WCGNNNNNNNCGW 2 cut(s) 615, 624
PdiI GCCGGC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 170, 709, 838
PflFI GACNNNGTC 2 cut(s) 116, 248
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 5 cut(s) 391, 674, 879, 1040, 1129
PleI GAGTC 3 cut(s) 65, 823, 896
PmaCI CACGTG 1 cut(s) 610
PmlI CACGTG 1 cut(s) 610
PpsI GAGTC 3 cut(s) 65, 823, 896
Ppu21I YACGTR 1 cut(s) 610
PsiI TTATAA 1 cut(s) 585
PspCI CACGTG 1 cut(s) 610
PspPI GGNCC 1 cut(s) 577
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 2 cut(s) 116, 248
RsaI GTAC 5 cut(s) 22, 630, 776, 798, 867
RsaNI GTAC 5 cut(s) 21, 629, 775, 797, 866
RseI CAYNNNNRTG 2 cut(s) 222, 434
SalI GTCGAC 1 cut(s) 826
SaqAI TTAA 2 cut(s) 80, 1011
SatI GCNGC 5 cut(s) 390, 673, 878, 1039, 1128
Sau3AI GATC 5 cut(s) 31, 193, 457, 766, 1087
Sau96I GGNCC 1 cut(s) 577
ScaI AGTACT 2 cut(s) 22, 776
SchI GAGTC 3 cut(s) 65, 823, 896
SduI GDGCHC 2 cut(s) 574, 1004
SfaNI GCATC 3 cut(s) 53, 401, 684
SfcI CTRYAG 1 cut(s) 984
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 222, 434
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 9 cut(s) 253, 485, 602, 857, 1065, 1076, 1119, 1131, 1146
SsiI CCGC 5 cut(s) 502, 552, 672, 924, 1015
SspI AATATT 1 cut(s) 589
SspMI CTAG 1 cut(s) 506
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 5 cut(s) 120, 159, 413, 518, 612
TaqI TCGA 5 cut(s) 159, 180, 482, 700, 827
TasI AATT 9 cut(s) 253, 485, 602, 857, 1065, 1076, 1119, 1131, 1146
TatI WGTACW 2 cut(s) 20, 774
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 3 cut(s) 170, 709, 838
Tru1I TTAA 2 cut(s) 80, 1011
Tru9I TTAA 2 cut(s) 80, 1011
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 4 cut(s) 389, 877, 1038, 1127
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 180, 390, 695, 720, 722, 1058, 1140
TspGWI ACGGA 1 cut(s) 807
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 2 cut(s) 116, 248
VpaK11BI GGWCC 1 cut(s) 577
XapI RAATTY 3 cut(s) 857, 1076, 1146
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 1 cut(s) 506
ZraI GACGTC 3 cut(s) 118, 157, 411
ZrmI AGTACT 2 cut(s) 22, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.