pycom04g15810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016361
Physical Location & Seq
Reverse (-)
18576722 .. 18578040
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15810.2

Sequence Viewer

Length: 927 bp
ATGATGATGAGGATGAAGATCGATCGTGGAGGATTAGACCATGCGGATTACTTGCGCATATCGTTTTCGTCTAGTCTTCTCCCGGAGCTCTCCACCACCACCCTTTCTCCCAATCACGTCTCTAAGCCTGCTTCTGATCACCCAATAAACCATATTCCGTCGTCACCGACAGTATCATATTCTTGCCCTCTCGATTCTTCTTCCATGGAAGGCAGTTGTAGGGGTCCGCTAGGATCGGATGAGCCTTCAAGGCTCAACAGAAGTACTAGTACAAAAGAAAGATTGCCCAGAGTCAACCGGCTAGTCAACACGCTGCTGTTTGGTCTCCGGTCATCATCGGAATCACCTACCCCTGCGGACGACGCTGACCTGGAACGGAGCAGGAAAACATCAAACAAAAGAACCTCAAGAAAAGGTGGCATCATGAAGTTGCTCTTCAAGTTCCGAGCCATGAATCTTGGAGCCCTGGTAGCTTCATTTGCAAAACCCCGCCAAGCTGCTTGCGACGATGAGGATCCTCACCAATCCCAAAACATTAATCGTCGACGCAAGAATAACAAATCGAAAGAGAGTGGCAGCAATGCTCTTCCATGGTCGGTTCAAAAGAAGCAAGGGAAAAGCAGCAGGACCAAGAACTCTTCAGAAGCAGTAGGAGGAGGTGACAAGTCCAGAGTATTATTGGAGATAAACTTGAGCGCAGTTAGAGGGATTTTAGAAGCTATAGGAAATAGCATGAGCACAGGTGGTACTGGTCGGAAACAAAGAAGAACAAGGAGCTGCCCAAGTTCTATTAAGTCCTCCCCAATTCACCAAGGATTTACAGGTGATGACCATAGTAATAAAGTGTGCTTTCATACAAGAGAAACCTCAATTCAGGCTGCAATTGCTCACTGTAAAACTTCATTTGAACAAACATCCATGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

33.63

Weight (kDa)

10.12

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09310
malus_domestica MD12G1194100.v1.1
prunus_persica Prupe.6G298800_v2.0.a1
pyrus_communis pycom04g15810 pycom12g18030
rosa_chinensis RchiOBHm_Chr3g0459701
rosa_laevigata RLG00000025066
rosa_multiflora Rmu_sc0000240.1_g000023
rosa_roxburghii Rroxscaffold_6G00420070
rosa_rugosa Rorug03G0037500 Rorug03G0037600
rosa_samantha Rh3AG096100 Rh3BG098800 Rh3CG100700 Rh3DG100100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 56
AccI GTMKAC 1 cut(s) 544
AciI CCGC 4 cut(s) 44, 227, 356, 490
AclWI GGATC 3 cut(s) 241, 509, 522
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 3 cut(s) 265, 271, 748
AgsI TTSAA 4 cut(s) 249, 439, 602, 908
AhlI ACTAGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 2 cut(s) 369, 465
AluBI AGCT 5 cut(s) 88, 473, 497, 719, 777
AluI AGCT 5 cut(s) 88, 473, 497, 719, 777
Alw21I GWGCWC 2 cut(s) 90, 740
Alw26I GTCTC 2 cut(s) 124, 329
AlwI GGATC 3 cut(s) 241, 509, 522
ApeKI GCWGC 6 cut(s) 313, 497, 576, 621, 777, 878
AseI ATTAAT 1 cut(s) 537
AspLEI GCGC 2 cut(s) 57, 698
AspS9I GGNCC 2 cut(s) 224, 627
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 7 cut(s) 131, 156, 336, 512, 671, 800, 836
AvaII GGWCC 2 cut(s) 224, 627
BamHI GGATCC 1 cut(s) 514
BanII GRGCYC 2 cut(s) 90, 466
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 2 cut(s) 90, 740
BbvI GCAGC 6 cut(s) 300, 484, 588, 633, 764, 865
BciT130I CCWGG 2 cut(s) 371, 467
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 124, 329
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 4 cut(s) 72, 230, 267, 302
BfmI CTRYAG 1 cut(s) 720
BglI GCCNNNNNGGC 1 cut(s) 250
BisI GCNGC 6 cut(s) 314, 498, 577, 622, 778, 879
BlsI GCNGC 6 cut(s) 315, 499, 578, 623, 779, 880
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 3 cut(s) 83, 371, 467
Bme18I GGWCC 2 cut(s) 224, 627
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 224, 627
BmiI GGNNCC 3 cut(s) 225, 463, 516
BmrFI CCNGG 3 cut(s) 83, 371, 467
BmsI GCATC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 391, 712
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 21
BsaBI GATNNNNATC 2 cut(s) 17, 513
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 204, 465, 590, 811
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 453, 483
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 754
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 2 cut(s) 17, 513
BseBI CCWGG 2 cut(s) 371, 467
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 204, 465, 590, 811
BseGI GGATG 3 cut(s) 18, 244, 914
BseJI GATNNNNATC 2 cut(s) 17, 513
BseMI GCAATG 1 cut(s) 586
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 1 cut(s) 669
BseXI GCAGC 6 cut(s) 300, 484, 588, 633, 764, 865
Bsh1285I CGRYCG 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 90, 740
BsiSI CCGG 3 cut(s) 83, 298, 328
BsmAI GTCTC 2 cut(s) 124, 329
BsmBI CGTCTC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 329
Bsp1286I GDGCHC 3 cut(s) 90, 466, 740
Bsp143I GATC 5 cut(s) 18, 22, 136, 233, 514
Bsp19I CCATGG 2 cut(s) 204, 590
BspACI CCGC 4 cut(s) 44, 227, 356, 490
BspDI ATCGAT 1 cut(s) 21
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 3 cut(s) 225, 463, 516
BspPI GGATC 3 cut(s) 241, 509, 522
BspQI GCTCTTC 2 cut(s) 440, 591
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 754
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 4 cut(s) 204, 465, 590, 811
BssMI GATC 5 cut(s) 18, 22, 136, 233, 514
BssT1I CCWWGG 3 cut(s) 204, 590, 811
Bst2UI CCWGG 2 cut(s) 371, 467
Bst4CI ACNGT 2 cut(s) 172, 893
Bst6I CTCTTC 3 cut(s) 440, 591, 643
BstC8I GCNNGC 2 cut(s) 129, 502
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 2 cut(s) 204, 590
BstF5I GGATG 3 cut(s) 18, 244, 914
BstHHI GCGC 2 cut(s) 57, 698
BstKTI GATC 5 cut(s) 21, 25, 139, 236, 517
BstMAI GTCTC 2 cut(s) 124, 329
BstMBI GATC 5 cut(s) 18, 22, 136, 233, 514
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 5 cut(s) 250, 362, 470, 479, 884
BstNI CCWGG 2 cut(s) 371, 467
BstSCI CCNGG 3 cut(s) 81, 369, 465
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 6 cut(s) 300, 484, 588, 633, 764, 865
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 2 cut(s) 204, 590
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 18, 244, 914
BtsIMutI CAGTG 1 cut(s) 889
Cac8I GCNNGC 2 cut(s) 129, 502
CciI TCATGA 1 cut(s) 423
CfoI GCGC 2 cut(s) 57, 698
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 224, 627
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 2 cut(s) 371, 555
Csp6I GTAC 3 cut(s) 264, 270, 747
CviAII CATG 7 cut(s) 41, 205, 424, 451, 591, 733, 919
CviQI GTAC 3 cut(s) 264, 270, 747
DdeI CTNAG 1 cut(s) 123
DpnI GATC 5 cut(s) 20, 24, 138, 235, 516
DpnII GATC 5 cut(s) 18, 22, 136, 233, 514
Eam1104I CTCTTC 3 cut(s) 440, 591, 643
EarI CTCTTC 3 cut(s) 440, 591, 643
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 3 cut(s) 204, 590, 811
Eco24I GRGCYC 2 cut(s) 90, 466
Eco31I GGTCTC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 224, 627
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 369, 465
EcoT14I CCWWGG 3 cut(s) 204, 590, 811
EcoT38I GRGCYC 2 cut(s) 90, 466
ErhI CCWWGG 3 cut(s) 204, 590, 811
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 7 cut(s) 44, 208, 427, 454, 594, 736, 922
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 7 cut(s) 40, 204, 423, 450, 590, 732, 918
FauI CCCGC 1 cut(s) 497
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 544
Fnu4HI GCNGC 6 cut(s) 314, 498, 577, 622, 778, 879
FokI GGATG 3 cut(s) 25, 251, 901
FriOI GRGCYC 2 cut(s) 90, 466
Fsp4HI GCNGC 6 cut(s) 314, 498, 577, 622, 778, 879
FspBI CTAG 4 cut(s) 72, 230, 267, 302
FspI TGCGCA 1 cut(s) 56
GlaI GCGC 2 cut(s) 56, 697
GluI GCNGC 6 cut(s) 314, 498, 577, 622, 778, 879
HapII CCGG 3 cut(s) 83, 298, 328
HgaI GACGC 2 cut(s) 371, 555
HhaI GCGC 2 cut(s) 57, 698
Hin1II CATG 7 cut(s) 44, 208, 427, 454, 594, 736, 922
Hin6I GCGC 2 cut(s) 55, 696
HinP1I GCGC 2 cut(s) 55, 696
HincII GTYRAC 3 cut(s) 295, 307, 545
HindII GTYRAC 3 cut(s) 295, 307, 545
HinfI GANTC 4 cut(s) 194, 291, 341, 454
HpaII CCGG 3 cut(s) 83, 298, 328
HphI GGTGA 7 cut(s) 131, 156, 336, 512, 671, 800, 836
Hpy166II GTNNAC 3 cut(s) 295, 307, 545
Hpy188I TCNGA 6 cut(s) 136, 238, 340, 446, 643, 756
Hpy188III TCNNGA 5 cut(s) 191, 408, 424, 669, 924
Hpy8I GTNNAC 3 cut(s) 295, 307, 545
Hpy99I CGWCG 5 cut(s) 163, 365, 509, 546, 549
HpyAV CCTTC 2 cut(s) 203, 255
HpyCH4III ACNGT 2 cut(s) 172, 893
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 482, 881
HpyF10VI GCNNNNNNNGC 5 cut(s) 250, 362, 470, 479, 884
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 7 cut(s) 44, 208, 427, 454, 594, 736, 922
HspAI GCGC 2 cut(s) 55, 696
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 5 cut(s) 18, 22, 136, 233, 514
LguI GCTCTTC 2 cut(s) 440, 591
LmnI GCTCC 4 cut(s) 85, 378, 461, 774
Lsp1109I GCAGC 6 cut(s) 300, 484, 588, 633, 764, 865
LweI GCATC 1 cut(s) 429
MaeI CTAG 4 cut(s) 72, 230, 267, 302
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 162, 659
MalI GATC 5 cut(s) 20, 24, 138, 235, 516
MboI GATC 5 cut(s) 18, 22, 136, 233, 514
MboII GAAGA 8 cut(s) 28, 68, 189, 192, 427, 578, 630, 777
MfeI CAATTG 1 cut(s) 882
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 3 cut(s) 90, 466, 740
MluCI AATT 3 cut(s) 804, 870, 882
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 734
MseI TTAA 2 cut(s) 537, 792
MspI CCGG 3 cut(s) 83, 298, 328
MspR9I CCNGG 3 cut(s) 83, 371, 467
MunI CAATTG 1 cut(s) 882
MvaI CCWGG 2 cut(s) 371, 467
MwoI GCNNNNNNNGC 5 cut(s) 250, 362, 470, 479, 884
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 2 cut(s) 204, 590
NdeII GATC 5 cut(s) 18, 22, 136, 233, 514
NlaIII CATG 7 cut(s) 44, 208, 427, 454, 594, 736, 922
NlaIV GGNNCC 3 cut(s) 225, 463, 516
NmuCI GTSAC 2 cut(s) 162, 659
NsbI TGCGCA 1 cut(s) 56
PagI TCATGA 1 cut(s) 423
PciSI GCTCTTC 2 cut(s) 440, 591
PfeI GAWTC 3 cut(s) 194, 341, 454
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 6 cut(s) 315, 499, 578, 623, 779, 880
Ple19I CGATCG 1 cut(s) 25
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 369, 465
PspGI CCWGG 2 cut(s) 369, 465
PspN4I GGNNCC 3 cut(s) 225, 463, 516
PspPI GGNCC 2 cut(s) 224, 627
PsuI RGATCY 1 cut(s) 514
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 3 cut(s) 265, 271, 748
RsaNI GTAC 3 cut(s) 264, 270, 747
SacI GAGCTC 1 cut(s) 90
SalI GTCGAC 1 cut(s) 543
SapI GCTCTTC 2 cut(s) 440, 591
SaqAI TTAA 2 cut(s) 537, 792
SatI GCNGC 6 cut(s) 314, 498, 577, 622, 778, 879
Sau3AI GATC 5 cut(s) 18, 22, 136, 233, 514
Sau96I GGNCC 2 cut(s) 224, 627
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 3 cut(s) 83, 371, 467
SduI GDGCHC 3 cut(s) 90, 466, 740
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 720
SgrDI CGTCGACG 1 cut(s) 543
SinI GGWCC 2 cut(s) 224, 627
SmlI CTYRAG 2 cut(s) 406, 691
SmoI CTYRAG 2 cut(s) 406, 691
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 3 cut(s) 804, 870, 882
SsiI CCGC 4 cut(s) 44, 227, 356, 490
SspMI CTAG 4 cut(s) 72, 230, 267, 302
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 81, 369, 465
StyI CCWWGG 3 cut(s) 204, 590, 811
TaaI ACNGT 2 cut(s) 172, 893
TaiI ACGT 1 cut(s) 120
TaqI TCGA 4 cut(s) 21, 192, 544, 563
TasI AATT 3 cut(s) 804, 870, 882
TatI WGTACW 2 cut(s) 263, 269
TfiI GAWTC 3 cut(s) 194, 341, 454
Tru1I TTAA 2 cut(s) 537, 792
Tru9I TTAA 2 cut(s) 537, 792
TscAI CASTG 1 cut(s) 896
TseFI GTSAC 2 cut(s) 162, 659
TseI GCWGC 6 cut(s) 313, 497, 576, 621, 777, 878
Tsp45I GTSAC 2 cut(s) 162, 659
TspDTI ATGAA 6 cut(s) 29, 440, 465, 467, 842, 891
TspGWI ACGGA 2 cut(s) 147, 391
TspRI CASTG 1 cut(s) 896
VpaK11BI GGWCC 2 cut(s) 224, 627
VspI ATTAAT 1 cut(s) 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 544
XspI CTAG 4 cut(s) 72, 230, 267, 302
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.