RchiOBHm_Chr3g0459701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016361
Physical Location & Seq
Forward (+)
8062703 .. 8063394
692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42629

Sequence Viewer

Length: 690 bp
ATGAGTTGTAGTACTCTGCGAGATCTGGGCTGTGGAGGAAGCTTCTCCTTCAGCTGCTCCGACTCCGACTTAAACTTCTCCTCTGCCCTCTCCCATTTCACCGACGATGTCGGTGATGATGTTGTTGAAGAGGATGATGATAGTGACGTCGACGATGAAGAATCATACATCGAAATAGCACTGGATCAACACCATCCTAAAGCAAGCCATGATGATGGTGATGGAGACCGGTTAGACCATGTCAATTACTTGCGCATATCGTTTTCGTCAAGCTTTCCCTTCCCAGACTTCTCCAACCACACCACCAACCCTAATACTCAAGACGACAGGAACATCGTCTCCGAGACGACGACTACTGACCCAGCTGGAGCAGTAAAGCAGGCAGCATCATCTTCATCAATGACGTCAATATCAGCGTTGTCCACCTCAATGGAAGACTTTAGAGGCTCTGATCATGATGTTAGATCCAAAAGGTCGAAATTGCCGGCAGTCAACCGCCTAGTCAATACGTTGTTCTTTAGTCTTTGGTCATCGTCGGACGCCACCGCCAAGAAAGTTAGTGGTGCTCAGGACCATTATAATATTAGTCATCCCCAATTGCACGTGGACAACGATGACTTCGTACAGAACAGGTATGCCAAAACAAATTTCTTGATTATTTTTAGGTTAAATCATAGGAAAGTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.37

Weight (kDa)

4.68

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09310
malus_domestica MD12G1194100.v1.1
prunus_persica Prupe.6G298800_v2.0.a1
pyrus_communis pycom04g15810 pycom12g18030
rosa_chinensis RchiOBHm_Chr3g0459701
rosa_laevigata RLG00000025066
rosa_multiflora Rmu_sc0000240.1_g000023
rosa_roxburghii Rroxscaffold_6G00420070
rosa_rugosa Rorug03G0037500 Rorug03G0037600
rosa_samantha Rh3AG096100 Rh3BG098800 Rh3CG100700 Rh3DG100100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AatII GACGTC 2 cut(s) 150, 407
Acc16I TGCGCA 1 cut(s) 254
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 496, 546
AclWI GGATC 2 cut(s) 192, 459
AcsI RAATTY 1 cut(s) 646
AcuI CTGAAG 1 cut(s) 34
AcvI CACGTG 1 cut(s) 604
AcyI GRCGYC 3 cut(s) 147, 404, 540
AfaI GTAC 2 cut(s) 13, 624
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 4 cut(s) 42, 54, 273, 365
AluI AGCT 4 cut(s) 42, 54, 273, 365
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 3 cut(s) 219, 338, 343
AlwI GGATC 2 cut(s) 192, 459
ApeKI GCWGC 2 cut(s) 54, 383
ApoI RAATTY 1 cut(s) 646
AsiGI ACCGGT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 3 cut(s) 91, 125, 230
AvaII GGWCC 1 cut(s) 571
BbrPI CACGTG 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 2 cut(s) 41, 395
BccI CCATC 3 cut(s) 201, 209, 215
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 3 cut(s) 219, 338, 343
BfaI CTAG 1 cut(s) 500
BglII AGATCT 1 cut(s) 22
BisI GCNGC 2 cut(s) 55, 384
BlsI GCNGC 2 cut(s) 56, 385
BmcAI AGTACT 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmsI GCATC 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 3 cut(s) 147, 404, 540
BsaI GGTCTC 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bse118I RCCGGY 2 cut(s) 228, 484
Bse1I ACTGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 139, 193, 589
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 41, 395
BseYI CCCAGC 1 cut(s) 361
BshTI ACCGGT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 229, 485
BsmAI GTCTC 3 cut(s) 219, 338, 343
BsmBI CGTCTC 2 cut(s) 338, 343
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 4 cut(s) 22, 184, 451, 464
BspACI CCGC 2 cut(s) 496, 546
BspCNI CTCAG 1 cut(s) 580
BspHI TCATGA 1 cut(s) 454
BspPI GGATC 2 cut(s) 192, 459
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 2 cut(s) 228, 484
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 2 cut(s) 228, 484
BssMI GATC 4 cut(s) 22, 184, 451, 464
BssNI GRCGYC 3 cut(s) 147, 404, 540
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 3 cut(s) 147, 404, 540
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 205, 381, 486
BstDEI CTNAG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 139, 193, 589
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 4 cut(s) 25, 187, 454, 467
BstMAI GTCTC 3 cut(s) 219, 338, 343
BstMBI GATC 4 cut(s) 22, 184, 451, 464
BstV1I GCAGC 2 cut(s) 41, 395
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 22, 464
BstXI CCANNNNNNTGG 2 cut(s) 215, 430
BstYI RGATCY 2 cut(s) 22, 464
BtsCI GGATG 3 cut(s) 139, 193, 589
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 3 cut(s) 205, 381, 486
CciI TCATGA 1 cut(s) 454
CfoI GCGC 1 cut(s) 255
Cfr10I RCCGGY 2 cut(s) 228, 484
Cfr13I GGNCC 1 cut(s) 571
CseI GACGC 1 cut(s) 548
Csp6I GTAC 2 cut(s) 12, 623
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 3 cut(s) 209, 239, 455
CviJI RGCY 7 cut(s) 30, 42, 54, 207, 273, 365, 447
CviKI_1 RGCY 7 cut(s) 30, 42, 54, 207, 273, 365, 447
CviQI GTAC 2 cut(s) 12, 623
DdeI CTNAG 1 cut(s) 567
DpnI GATC 4 cut(s) 24, 186, 453, 466
DpnII GATC 4 cut(s) 22, 184, 451, 464
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 34
Eco72I CACGTG 1 cut(s) 604
Esp3I CGTCTC 2 cut(s) 338, 343
FaeI CATG 3 cut(s) 212, 242, 458
FaiI YATR 9 cut(s) 166, 210, 240, 257, 456, 579, 636, 675, 688
FatI CATG 3 cut(s) 208, 238, 454
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 55, 384
FokI GGATG 3 cut(s) 146, 180, 576
Fsp4HI GCNGC 2 cut(s) 55, 384
FspBI CTAG 1 cut(s) 500
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 1 cut(s) 254
GluI GCNGC 2 cut(s) 55, 384
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 387
HapII CCGG 2 cut(s) 229, 485
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 3 cut(s) 147, 404, 540
Hin1II CATG 3 cut(s) 212, 242, 458
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HincII GTYRAC 2 cut(s) 151, 493
HindII GTYRAC 2 cut(s) 151, 493
HindIII AAGCTT 2 cut(s) 40, 271
HinfI GANTC 2 cut(s) 62, 161
HpaII CCGG 2 cut(s) 229, 485
HphI GGTGA 3 cut(s) 91, 125, 230
Hpy166II GTNNAC 4 cut(s) 151, 423, 493, 607
Hpy188I TCNGA 5 cut(s) 61, 67, 343, 451, 538
Hpy188III TCNNGA 4 cut(s) 320, 455, 569, 652
Hpy8I GTNNAC 4 cut(s) 151, 423, 493, 607
Hpy99I CGWCG 5 cut(s) 107, 152, 155, 352, 538
HpyAV CCTTC 2 cut(s) 58, 289
HpyCH4IV ACGT 4 cut(s) 147, 404, 509, 603
HpyCH4V TGCA 1 cut(s) 601
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 4 cut(s) 147, 404, 509, 603
Hsp92I GRCGYC 3 cut(s) 147, 404, 540
Hsp92II CATG 3 cut(s) 212, 242, 458
HspAI GCGC 1 cut(s) 253
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 22, 184, 451, 464
LmnI GCTCC 2 cut(s) 62, 368
Lsp1109I GCAGC 2 cut(s) 41, 395
LweI GCATC 1 cut(s) 395
MaeI CTAG 1 cut(s) 500
MaeII ACGT 4 cut(s) 147, 404, 509, 603
MaeIII GTNAC 1 cut(s) 143
MalI GATC 4 cut(s) 24, 186, 453, 466
MboI GATC 4 cut(s) 22, 184, 451, 464
MboII GAAGA 4 cut(s) 140, 170, 384, 446
MfeI CAATTG 1 cut(s) 596
MflI RGATCY 2 cut(s) 22, 464
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 4 cut(s) 244, 479, 596, 646
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 4 cut(s) 84, 90, 318, 516
MnlI CCTC 6 cut(s) 29, 91, 98, 124, 436, 437
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 2 cut(s) 71, 668
MslI CAYNNNNRTG 2 cut(s) 213, 428
MspA1I CMGCKG 2 cut(s) 54, 365
MspI CCGG 2 cut(s) 229, 485
MunI CAATTG 1 cut(s) 596
NaeI GCCGGC 1 cut(s) 486
NdeII GATC 4 cut(s) 22, 184, 451, 464
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 3 cut(s) 212, 242, 458
NmuCI GTSAC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 254
PagI TCATGA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 2 cut(s) 609, 618
PdiI GCCGGC 1 cut(s) 486
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 2 cut(s) 107, 239
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 2 cut(s) 56, 385
PleI GAGTC 1 cut(s) 56
PmaCI CACGTG 1 cut(s) 604
PmlI CACGTG 1 cut(s) 604
PpsI GAGTC 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 604
PsiI TTATAA 1 cut(s) 579
PspCI CACGTG 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 571
PsuI RGATCY 2 cut(s) 22, 464
PsyI GACNNNGTC 2 cut(s) 107, 239
PvuII CAGCTG 2 cut(s) 54, 365
RsaI GTAC 2 cut(s) 13, 624
RsaNI GTAC 2 cut(s) 12, 623
RseI CAYNNNNRTG 2 cut(s) 213, 428
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 71, 668
SatI GCNGC 2 cut(s) 55, 384
Sau3AI GATC 4 cut(s) 22, 184, 451, 464
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 395
SgrDI CGTCGACG 1 cut(s) 149
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 213, 428
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 4 cut(s) 244, 479, 596, 646
SsiI CCGC 2 cut(s) 496, 546
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 500
TaiI ACGT 4 cut(s) 150, 407, 512, 606
TaqI TCGA 3 cut(s) 150, 171, 476
TasI AATT 4 cut(s) 244, 479, 596, 646
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 71, 668
Tru9I TTAA 2 cut(s) 71, 668
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 2 cut(s) 54, 383
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 171, 384
TspRI CASTG 1 cut(s) 186
Tth111I GACNNNGTC 2 cut(s) 107, 239
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 500
ZraI GACGTC 2 cut(s) 148, 405
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.