Prupe.6G298800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016361
Physical Location & Seq
Reverse (-)
27231474 .. 27233722
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G298800.1

Sequence Viewer

Length: 1074 bp
ATGGAAAGTATGAGTTGTTCTGATCTGCGAGATCTGAGCCATGGAGGAAGCTTCTCCTTCAGCTGCTCCGAGTCAGATTTGAACTTCTCCTCTCTTTCTCATTTCACCGATGAAGACGAAGATGGCGATGATGCTGATGGCACGAGTGATGATGGATCATACATCGAAATAGTCCTTGATCACCATGATCATCCTAAACCAAGTTGTGATCGAGATGACGATGATCGTGTTGGAGGCTTAGACCATGTAGATTACTTGCGTTTATCTTTTTCATCTAGCCTTCTCCCGGAGCTCTCCACCCACACCCACCAAAACATCTCTGATCCTCCTAACGACCAACCAGTAAACGAGACGACATCATCTTCAGCGTCGTGCACTTTGAGCTCTTCGTCCACGGAAAGCAGTTGTGGGGCTCGGAAAGAGGGATCTGATCAAGACTCTTCCATGCTGCAAAGAAGCACCCCCACTAAAAGAGGGAGATTGCCTGCAGTCAACACGTTGCTCCTTGGTCTCCGGTCATCGTCGGAATTTTCTATCCACGCGGACAATGCTGACGTGGCACGTAGCAGGAAAACAACGAACATGAGAAGCTCCATAAACGGTGGCATAATGAAGCTGCTGTTCAAGTTTCGAGCCATGAATTTGGGAGCCCTGGTAGCCTCAATTGTGAAGCCCCGCCAAGTTGCCTGCGATCCCGGTCGAAGCAAGAAGAAGACAAAATCAAAAAAGAGTGTTCTGAAGCCTCTGGACAAATGGTTGGCGCAGAAGAAACAAGGGAAGCGCAAGGATTCAGAAGAAGGAGAAGGTGAGGAGAAATATTCGAGGGTTTTGGAAATAAACTTGGGCGCAGTTAGAGGGGTTTTGGAAGCCATAGGAAATAGTATGAGCACAGGCATTGGTCGAAAAGATAGAAGAACGAGAAGCTGCCCGAGTTCGATCAAGTCGTCGCCGATTCACAAAGGGTTTGCGAGTGATGAGAGAAATAAAGTGTACGTGTATGCAAGAGAGACCTCAATTCAGGCTGCAATTGCCCACTGTAAAACTTCATTTGAGCAACCACCCACGTCGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

38.91

Weight (kDa)

6.61

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09310
malus_domestica MD12G1194100.v1.1
prunus_persica Prupe.6G298800_v2.0.a1
pyrus_communis pycom04g15810 pycom12g18030
rosa_chinensis RchiOBHm_Chr3g0459701
rosa_laevigata RLG00000025066
rosa_multiflora Rmu_sc0000240.1_g000023
rosa_roxburghii Rroxscaffold_6G00420070
rosa_rugosa Rorug03G0037500 Rorug03G0037600
rosa_samantha Rh3AG096100 Rh3BG098800 Rh3CG100700 Rh3DG100100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 542
AciI CCGC 2 cut(s) 542, 676
AclWI GGATC 4 cut(s) 163, 317, 433, 686
AcsI RAATTY 2 cut(s) 527, 640
AcuI CTGAAG 3 cut(s) 43, 348, 758
AfaI GTAC 1 cut(s) 992
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 2 cut(s) 495, 993
AgsI TTSAA 2 cut(s) 82, 625
AjiI CACGTC 2 cut(s) 556, 1065
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 7 cut(s) 51, 63, 292, 384, 591, 616, 924
AluI AGCT 7 cut(s) 51, 63, 292, 384, 591, 616, 924
Alw21I GWGCWC 4 cut(s) 294, 377, 386, 890
Alw26I GTCTC 3 cut(s) 344, 515, 1001
Alw44I GTGCAC 1 cut(s) 373
AlwI GGATC 4 cut(s) 163, 317, 433, 686
Ama87I CYCGRG 1 cut(s) 928
AoxI GGCC 1 cut(s) 1068
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 5 cut(s) 63, 448, 616, 924, 1022
ApoI RAATTY 2 cut(s) 527, 640
AspLEI GCGC 3 cut(s) 763, 783, 848
AsuC2I CCSGG 2 cut(s) 287, 696
AsuHPI GGTGA 3 cut(s) 97, 173, 818
AvaI CYCGRG 1 cut(s) 928
BaeGI GKGCMC 1 cut(s) 377
BanII GRGCYC 4 cut(s) 294, 386, 415, 652
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 2 cut(s) 120, 719
Bbv12I GWGCWC 4 cut(s) 294, 377, 386, 890
BbvI GCAGC 5 cut(s) 50, 435, 603, 911, 1009
BccI CCATC 3 cut(s) 116, 131, 146
BciT130I CCWGG 1 cut(s) 653
BclI TGATCA 3 cut(s) 178, 187, 430
BcnI CCSGG 2 cut(s) 287, 696
BcoDI GTCTC 3 cut(s) 344, 515, 1001
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 486
BglII AGATCT 1 cut(s) 31
BisI GCNGC 5 cut(s) 64, 449, 617, 925, 1023
BlsI GCNGC 5 cut(s) 65, 450, 618, 926, 1024
Bme1390I CCNGG 3 cut(s) 287, 653, 696
BmeT110I CYCGRG 1 cut(s) 928
BmgBI CACGTC 2 cut(s) 556, 1065
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 3 cut(s) 287, 653, 696
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 2 cut(s) 120, 719
BpuMI CCSGG 2 cut(s) 287, 696
BsaAI YACGTR 2 cut(s) 563, 994
BsaI GGTCTC 2 cut(s) 515, 1001
BsaJI CCNNGG 4 cut(s) 40, 393, 505, 651
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 4 cut(s) 40, 393, 505, 651
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 79, 824
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 5 cut(s) 50, 435, 603, 911, 1009
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 700
BshFI GGCC 1 cut(s) 1070
BsiEI CGRYCG 1 cut(s) 700
BsiHKAI GWGCWC 4 cut(s) 294, 377, 386, 890
BsiHKCI CYCGRG 1 cut(s) 928
BsiSI CCGG 3 cut(s) 287, 514, 696
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 344, 515, 1001
BsmBI CGTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 1070
Bso31I GGTCTC 2 cut(s) 515, 1001
BsoBI CYCGRG 1 cut(s) 928
Bsp1286I GDGCHC 6 cut(s) 294, 377, 386, 415, 652, 890
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 2 cut(s) 542, 676
BspANI GGCC 1 cut(s) 1070
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 4 cut(s) 163, 317, 433, 686
BspQI GCTCTTC 1 cut(s) 391
BspTNI GGTCTC 2 cut(s) 515, 1001
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 4 cut(s) 40, 393, 505, 651
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 2 cut(s) 40, 505
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 2 cut(s) 602, 1037
Bst6I CTCTTC 2 cut(s) 391, 445
BstBAI YACGTR 2 cut(s) 563, 994
BstC8I GCNNGC 2 cut(s) 486, 688
BstDEI CTNAG 2 cut(s) 35, 238
BstDSI CCRYGG 2 cut(s) 40, 393
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 3 cut(s) 763, 783, 848
BstMAI GTCTC 3 cut(s) 344, 515, 1001
BstMCI CGRYCG 1 cut(s) 700
BstMWI GCNNNNNNNGC 5 cut(s) 381, 548, 557, 656, 1028
BstNI CCWGG 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 285, 651, 694
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 5 cut(s) 50, 435, 603, 911, 1009
BstV2I GAAGAC 2 cut(s) 120, 719
BstX2I RGATCY 2 cut(s) 31, 425
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 2 cut(s) 31, 425
BsuRI GGCC 1 cut(s) 1070
BtgI CCRYGG 2 cut(s) 40, 393
BtgZI GCGATG 1 cut(s) 141
BtrI CACGTC 2 cut(s) 556, 1065
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 1033
Cac8I GCNNGC 2 cut(s) 486, 688
CfoI GCGC 3 cut(s) 763, 783, 848
CseI GACGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 991
CviAII CATG 6 cut(s) 41, 185, 245, 445, 583, 637
CviQI GTAC 1 cut(s) 991
DdeI CTNAG 2 cut(s) 35, 238
Eam1104I CTCTTC 2 cut(s) 391, 445
EarI CTCTTC 2 cut(s) 391, 445
Ecl136II GAGCTC 2 cut(s) 292, 384
Eco130I CCWWGG 2 cut(s) 40, 505
Eco24I GRGCYC 4 cut(s) 294, 386, 415, 652
Eco31I GGTCTC 2 cut(s) 515, 1001
Eco53kI GAGCTC 2 cut(s) 292, 384
Eco57I CTGAAG 3 cut(s) 43, 348, 758
Eco88I CYCGRG 1 cut(s) 928
EcoICRI GAGCTC 2 cut(s) 292, 384
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 40, 505
EcoT38I GRGCYC 4 cut(s) 294, 386, 415, 652
ErhI CCWWGG 2 cut(s) 40, 505
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 6 cut(s) 44, 188, 248, 448, 586, 640
FatI CATG 6 cut(s) 40, 184, 244, 444, 582, 636
FauI CCCGC 1 cut(s) 683
FbaI TGATCA 3 cut(s) 178, 187, 430
Fnu4HI GCNGC 5 cut(s) 64, 449, 617, 925, 1023
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 4 cut(s) 294, 386, 415, 652
Fsp4HI GCNGC 5 cut(s) 64, 449, 617, 925, 1023
FspBI CTAG 1 cut(s) 276
GlaI GCGC 3 cut(s) 762, 782, 847
GluI GCNGC 5 cut(s) 64, 449, 617, 925, 1023
HaeIII GGCC 1 cut(s) 1070
HapII CCGG 3 cut(s) 287, 514, 696
HgaI GACGC 1 cut(s) 357
HhaI GCGC 3 cut(s) 763, 783, 848
Hin1II CATG 6 cut(s) 44, 188, 248, 448, 586, 640
Hin6I GCGC 3 cut(s) 761, 781, 846
HinP1I GCGC 3 cut(s) 761, 781, 846
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 4 cut(s) 71, 437, 788, 952
HpaII CCGG 3 cut(s) 287, 514, 696
HphI GGTGA 3 cut(s) 97, 173, 818
Hpy166II GTNNAC 5 cut(s) 346, 375, 393, 493, 991
Hpy188III TCNNGA 3 cut(s) 212, 434, 746
Hpy8I GTNNAC 5 cut(s) 346, 375, 393, 493, 991
Hpy99I CGWCG 4 cut(s) 373, 526, 949, 1069
HpyAV CCTTC 4 cut(s) 67, 290, 791, 797
HpyCH4III ACNGT 2 cut(s) 602, 1037
HpyCH4IV ACGT 5 cut(s) 497, 555, 562, 993, 1064
HpyCH4V TGCA 5 cut(s) 375, 451, 488, 1001, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 381, 548, 557, 656, 1028
HpyF3I CTNAG 2 cut(s) 35, 238
HpySE526I ACGT 5 cut(s) 497, 555, 562, 993, 1064
Hsp92II CATG 6 cut(s) 44, 188, 248, 448, 586, 640
HspAI GCGC 3 cut(s) 761, 781, 846
Ksp22I TGATCA 3 cut(s) 178, 187, 430
LguI GCTCTTC 1 cut(s) 391
LmnI GCTCC 5 cut(s) 71, 289, 507, 596, 647
Lsp1109I GCAGC 5 cut(s) 50, 435, 603, 911, 1009
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 276
MaeII ACGT 5 cut(s) 497, 555, 562, 993, 1064
MfeI CAATTG 2 cut(s) 663, 1026
MflI RGATCY 2 cut(s) 31, 425
MhlI GDGCHC 6 cut(s) 294, 377, 386, 415, 652, 890
MluCI AATT 5 cut(s) 527, 640, 663, 1014, 1026
MlyI GAGTC 2 cut(s) 80, 431
MmeI TCCRAC 2 cut(s) 211, 504
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 3 cut(s) 287, 514, 696
MspR9I CCNGG 3 cut(s) 287, 653, 696
MunI CAATTG 2 cut(s) 663, 1026
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 5 cut(s) 381, 548, 557, 656, 1028
NciI CCSGG 2 cut(s) 287, 696
NcoI CCATGG 1 cut(s) 40
NlaIII CATG 6 cut(s) 44, 188, 248, 448, 586, 640
NlaIV GGNNCC 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 391
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 941
PfeI GAWTC 2 cut(s) 788, 952
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 5 cut(s) 65, 450, 618, 926, 1024
PleI GAGTC 2 cut(s) 79, 431
PpsI GAGTC 2 cut(s) 79, 431
Ppu21I YACGTR 2 cut(s) 563, 994
Psp124BI GAGCTC 2 cut(s) 294, 386
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 649
PsrI GAACNNNNNNTAC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 31, 425
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 1 cut(s) 992
RsaNI GTAC 1 cut(s) 991
SacI GAGCTC 2 cut(s) 294, 386
SapI GCTCTTC 1 cut(s) 391
SatI GCNGC 5 cut(s) 64, 449, 617, 925, 1023
SchI GAGTC 2 cut(s) 80, 431
ScrFI CCNGG 3 cut(s) 287, 653, 696
SduI GDGCHC 6 cut(s) 294, 377, 386, 415, 652, 890
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 486
Sse9I AATT 5 cut(s) 527, 640, 663, 1014, 1026
SsiI CCGC 2 cut(s) 542, 676
SspI AATATT 1 cut(s) 818
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 2 cut(s) 294, 386
StyD4I CCNGG 3 cut(s) 285, 651, 694
StyI CCWWGG 2 cut(s) 40, 505
TaaI ACNGT 2 cut(s) 602, 1037
TaiI ACGT 5 cut(s) 500, 558, 565, 996, 1067
TaqI TCGA 7 cut(s) 165, 211, 631, 700, 821, 901, 935
TasI AATT 5 cut(s) 527, 640, 663, 1014, 1026
TfiI GAWTC 2 cut(s) 788, 952
TscAI CASTG 1 cut(s) 1040
TseI GCWGC 5 cut(s) 63, 448, 616, 924, 1022
TspDTI ATGAA 5 cut(s) 126, 261, 626, 653, 1035
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 1040
VneI GTGCAC 1 cut(s) 373
XapI RAATTY 2 cut(s) 527, 640
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.