FvH4_6g09530
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003105
Physical Location & Seq
Forward (+)
5689168 .. 5693204
4037 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09530.t1

Sequence Viewer

Length: 1452 bp
ATGAAGCCATATTTAGTTTGTGCAACTGTTCTTTTTCTGTCATTCCTTTGCCACTCTATAGCTGATCTCAGTTCGGACAAACAAGCCCTTCTTGACTTCATTTCAGTTGTTCCTCATGGCCGAAAAGTTAACTGGGATTCTACTACGCCAGTCTGCAATACTTGGGTTGGCATCACCTGTACCTTGAATGGCACACGTGTGCTTGCTGTTCGACTCCCTGGTGTTGGTCTCTATGGTCAAATTCCATCAAACACTCTTGGCAAGCTGGATGCTCTCATGGTCCTTAGCCTTCGCTCTAACCTCCTTAGTGGGAGTCTTCCATCTGATATTTTCTCCCTTCCATCCTTACGCTACATATACCTTCACAACAACAATCTTACAGGTAGTATTCCCTCTTCTCTGCCTCCCAACCTCACCGTACTAGATTTGTCTTCCAACTCTCTCACTGGCAGCATTCCAGCCACTATCCAAAATTTAACGCATCTCAACGGGCTGAACCTTCAAAACAATTACCTCAGTGGACCTGTTCCTGACATAAACATTCCAAAGCTGAAGTCTTTGAATTTAAGCTACAACCACCTTAATGGTTCAATTCCTCCTCCCCTTGAAAGGTTCCCCACTTCTTCCTTTGAAGGAAACTTGATGTTATGTGGGGCGCCACTAAAACAGTGTGCTTCAGTCACTCCATCACCTTCTCCATCCCCCAACCGTCAACCACCAGGCTCAATAGTCCCATCCGAACCAGAGAAAGGATCTAAGATGAAACTAAGTGTCGGGGCTATCATTGCCATTGCATGTGGTGGTTTTGCAGTGTTGTTTCTCTCAGTTCTAATAGTGGTGCTGTGCTGTTTGAAGAGGAAAAACAGCAAAGGCGGTGCTATAGTTAAAACAAAAGGTGGAAGGAGTGAGCCGCCAAAGGAGGACTTTGGAAGTGGGGTGCAAGAGGCTGAGAAGAACAAACTGGTTTTCTTTGAAGGCAGTTCTTATAATTTTGATCTTGAGGATTTACTAAGAGCTTCGGCTGAAGTGCTTGGAAAGGGGAGTTATGGGACTACTTACAAGGCCATCCTAGAGGAGGGGACAACAGTGGTTGTAAAAAGAATGAAAGAAGTGGTTGTGGGGAAAAGGGAATTTGAACAGCTAATGGAGAATGCCGGGAAAATTAGTCGGCACTCAAATGTTGTGCCCCTTCGTGCTTATTACTACTCCAAAGATGAAAAGCTCCTGGTTTATGACTACATTGCAGCTGGTAGCTTTGCTGCATTATTGCATGGGAAAGTGGACATAATGGACCGGATTGGGAAACCAGACTTAAGATTGCCCTTGGAAGTGCAAAAGGCCTTGCTCATATCCACTCGTCTGGTGGAGGGAAATTCATCCATGGAAACATCAAGTCCTCCAACATCCTTATCACACAAGACCTTAATGGTTGTATCTCAGACTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

484

Amino Acids

52.04

Weight (kDa)

9.04

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 24 - 61 8.2e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 81 - 126 1.5e-06 Leucine rich repeat
LRR_8 PF13855 136 - 194 6e-06 Leucine rich repeat
Pkinase PF00069 342 - 427 1.9e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 342 - 454 2e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
AccB1I GGYRCC 1 cut(s) 655
AciI CCGC 2 cut(s) 873, 911
AclWI GGATC 1 cut(s) 760
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 5 cut(s) 240, 472, 562, 1130, 1372
AcuI CTGAAG 3 cut(s) 572, 660, 1044
AcvI CACGTG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 2 cut(s) 181, 420
AfiI CCNNNNNNNGG 4 cut(s) 224, 609, 749, 1075
AflII CTTAAG 1 cut(s) 1312
AflIII ACRYGT 2 cut(s) 194, 196
AgsI TTSAA 9 cut(s) 187, 503, 562, 591, 608, 632, 853, 974, 1136
AjnI CCWGG 3 cut(s) 217, 718, 1224
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 9 cut(s) 62, 265, 550, 570, 1016, 1141, 1222, 1247, 1254
AluI AGCT 9 cut(s) 62, 265, 550, 570, 1016, 1141, 1222, 1247, 1254
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 760
AoxI GGCC 3 cut(s) 118, 1062, 1338
ApeKI GCWGC 3 cut(s) 450, 1244, 1259
ApoI RAATTY 5 cut(s) 240, 472, 562, 1130, 1372
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 3 cut(s) 280, 521, 1291
AsuC2I CCSGG 1 cut(s) 1156
AsuHPI GGTGA 3 cut(s) 166, 406, 681
AvaII GGWCC 3 cut(s) 280, 521, 1291
BaeGI GKGCMC 1 cut(s) 1188
BanI GGYRCC 1 cut(s) 655
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BbrPI CACGTG 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 308, 423
BbvI GCAGC 3 cut(s) 462, 1246, 1256
BccI CCATC 7 cut(s) 253, 328, 349, 694, 706, 742, 1073
BciT130I CCWGG 3 cut(s) 219, 720, 1226
BcnI CCSGG 1 cut(s) 1156
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 422, 1070
BfmI CTRYAG 2 cut(s) 57, 879
BfoI RGCGCY 1 cut(s) 659
BfrI CTTAAG 1 cut(s) 1312
BisI GCNGC 4 cut(s) 451, 911, 1245, 1260
BlsI GCNGC 4 cut(s) 452, 912, 1246, 1261
Bme1390I CCNGG 4 cut(s) 219, 720, 1156, 1226
Bme18I GGWCC 3 cut(s) 280, 521, 1291
BmgT120I GGNCC 3 cut(s) 280, 521, 1291
BmiI GGNNCC 2 cut(s) 614, 657
BmrFI CCNGG 4 cut(s) 219, 720, 1156, 1226
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 180, 259, 490
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 2 cut(s) 308, 423
Bpu10I CCTNAGC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 1019
BpuMI CCSGG 1 cut(s) 1156
BsaAI YACGTR 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 217, 1323, 1380
BsaWI WCCGGW 1 cut(s) 1293
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 609, 749, 1075
Bse1I ACTGG 4 cut(s) 137, 149, 451, 966
Bse3DI GCAATG 3 cut(s) 783, 789, 1239
BseBI CCWGG 3 cut(s) 219, 720, 1226
BseDI CCNNGG 3 cut(s) 217, 1323, 1380
BseGI GGATG 7 cut(s) 274, 341, 698, 734, 1065, 1376, 1403
BseLI CCNNNNNNNGG 4 cut(s) 224, 609, 749, 1075
BseMI GCAATG 3 cut(s) 783, 789, 1239
BseMII CTCAG 5 cut(s) 82, 529, 837, 939, 1451
BseNI ACTGG 4 cut(s) 137, 149, 451, 966
BseRI GAGGAG 2 cut(s) 588, 1088
BseSI GKGCMC 1 cut(s) 1188
BseXI GCAGC 3 cut(s) 462, 1246, 1256
BshFI GGCC 3 cut(s) 120, 1064, 1340
BshNI GGYRCC 1 cut(s) 655
BsiSI CCGG 2 cut(s) 1155, 1294
BslFI GGGAC 3 cut(s) 716, 1063, 1093
BslI CCNNNNNNNGG 4 cut(s) 224, 609, 749, 1075
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 3 cut(s) 716, 1063, 1093
BsmI GAATGC 2 cut(s) 453, 1156
BsnI GGCC 3 cut(s) 120, 1064, 1340
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 1188
Bsp143I GATC 3 cut(s) 64, 752, 994
Bsp19I CCATGG 1 cut(s) 1380
BspACI CCGC 2 cut(s) 873, 911
BspANI GGCC 3 cut(s) 120, 1064, 1340
BspCNI CTCAG 5 cut(s) 81, 528, 836, 940, 1450
BspLI GGNNCC 2 cut(s) 614, 657
BspPI GGATC 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 655
BspTI CTTAAG 1 cut(s) 1312
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 3 cut(s) 783, 789, 1239
BsrI ACTGG 4 cut(s) 137, 149, 451, 966
BssECI CCNNGG 3 cut(s) 217, 1323, 1380
BssMI GATC 3 cut(s) 64, 752, 994
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 2 cut(s) 1323, 1380
Bst2UI CCWGG 3 cut(s) 219, 720, 1226
Bst4CI ACNGT 5 cut(s) 28, 418, 669, 710, 1087
Bst6I CTCTTC 2 cut(s) 400, 848
BstACI GRCGYC 1 cut(s) 656
BstAFI CTTAAG 1 cut(s) 1312
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 204, 263
BstDSI CCRYGG 1 cut(s) 1380
BstENI CCTNNNNNAGG 1 cut(s) 1073
BstF5I GGATG 7 cut(s) 274, 341, 698, 734, 1065, 1376, 1403
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 3 cut(s) 67, 755, 997
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 64, 752, 994
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 3 cut(s) 219, 720, 1226
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 4 cut(s) 217, 718, 1154, 1224
BstSFI CTRYAG 2 cut(s) 57, 879
BstSLI GKGCMC 1 cut(s) 1188
BstV1I GCAGC 3 cut(s) 462, 1246, 1256
BstV2I GAAGAC 2 cut(s) 308, 423
BstX2I RGATCY 1 cut(s) 752
BstXI CCANNNNNNTGG 2 cut(s) 584, 1360
BstYI RGATCY 1 cut(s) 752
BsuRI GGCC 3 cut(s) 120, 1064, 1340
BtgI CCRYGG 1 cut(s) 1380
BtsCI GGATG 7 cut(s) 274, 341, 698, 734, 1065, 1376, 1403
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 5 cut(s) 444, 523, 674, 816, 1092
Cac8I GCNNGC 2 cut(s) 204, 263
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 3 cut(s) 280, 521, 1291
Csp6I GTAC 2 cut(s) 180, 419
CviAII CATG 5 cut(s) 116, 277, 795, 1271, 1381
CviQI GTAC 2 cut(s) 180, 419
DinI GGCGCC 1 cut(s) 657
DpnI GATC 3 cut(s) 66, 754, 996
DpnII GATC 3 cut(s) 64, 752, 994
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 400, 848
EarI CTCTTC 2 cut(s) 400, 848
Eco130I CCWWGG 2 cut(s) 1323, 1380
Eco147I AGGCCT 1 cut(s) 1340
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 3 cut(s) 280, 521, 1291
Eco57I CTGAAG 3 cut(s) 572, 660, 1044
Eco72I CACGTG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 1073
EcoRII CCWGG 3 cut(s) 217, 718, 1224
EcoT14I CCWWGG 2 cut(s) 1323, 1380
EgeI GGCGCC 1 cut(s) 657
EheI GGCGCC 1 cut(s) 657
ErhI CCWWGG 2 cut(s) 1323, 1380
FaeI CATG 5 cut(s) 119, 280, 798, 1274, 1384
FalI AAGNNNNNCTT 4 cut(s) 75, 107, 908, 940
FaqI GGGAC 3 cut(s) 716, 1063, 1093
FatI CATG 5 cut(s) 115, 276, 794, 1270, 1380
Fnu4HI GCNGC 4 cut(s) 451, 911, 1245, 1260
FokI GGATG 7 cut(s) 281, 328, 685, 721, 1052, 1363, 1390
Fsp4HI GCNGC 4 cut(s) 451, 911, 1245, 1260
FspBI CTAG 2 cut(s) 422, 1070
GlaI GCGC 1 cut(s) 657
GluI GCNGC 4 cut(s) 451, 911, 1245, 1260
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 3 cut(s) 120, 1064, 1340
HapII CCGG 2 cut(s) 1155, 1294
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 5 cut(s) 119, 280, 798, 1274, 1384
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 2 cut(s) 130, 713
HindII GTYRAC 2 cut(s) 130, 713
HinfI GANTC 3 cut(s) 137, 213, 313
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 1155, 1294
HphI GGTGA 3 cut(s) 166, 406, 681
Hpy166II GTNNAC 4 cut(s) 130, 521, 713, 1282
Hpy188I TCNGA 4 cut(s) 76, 325, 739, 1440
Hpy188III TCNNGA 3 cut(s) 92, 530, 998
Hpy8I GTNNAC 4 cut(s) 130, 521, 713, 1282
HpyCH4III ACNGT 5 cut(s) 28, 418, 669, 710, 1087
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 9 cut(s) 23, 156, 794, 809, 940, 1244, 1262, 1270, 1333
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 5 cut(s) 119, 280, 798, 1274, 1384
HspAI GCGC 1 cut(s) 656
KasI GGCGCC 1 cut(s) 655
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 3 cut(s) 64, 752, 994
LmnI GCTCC 1 cut(s) 1227
Lsp1109I GCAGC 3 cut(s) 462, 1246, 1256
LweI GCATC 3 cut(s) 180, 259, 490
MaeI CTAG 2 cut(s) 422, 1070
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 679
MalI GATC 3 cut(s) 66, 754, 996
MboI GATC 3 cut(s) 64, 752, 994
MboII GAAGA 6 cut(s) 308, 387, 423, 615, 865, 964
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 1 cut(s) 1188
MluCI AATT 9 cut(s) 240, 472, 508, 562, 591, 988, 1130, 1161, 1372
Mly113I GGCGCC 1 cut(s) 656
MlyI GAGTC 2 cut(s) 207, 322
MmeI TCCRAC 2 cut(s) 459, 1424
MseI TTAA 8 cut(s) 129, 476, 566, 582, 885, 1313, 1424, 1450
MslI CAYNNNNRTG 3 cut(s) 197, 582, 1176
MspA1I CMGCKG 1 cut(s) 1247
MspCI CTTAAG 1 cut(s) 1312
MspI CCGG 2 cut(s) 1155, 1294
MspR9I CCNGG 4 cut(s) 219, 720, 1156, 1226
Mva1269I GAATGC 2 cut(s) 453, 1156
MvaI CCWGG 3 cut(s) 219, 720, 1226
MwoI GCNNNNNNNGC 1 cut(s) 785
NarI GGCGCC 1 cut(s) 656
NciI CCSGG 1 cut(s) 1156
NcoI CCATGG 1 cut(s) 1380
NdeII GATC 3 cut(s) 64, 752, 994
NlaIII CATG 5 cut(s) 119, 280, 798, 1274, 1384
NlaIV GGNNCC 2 cut(s) 614, 657
NmuCI GTSAC 1 cut(s) 679
NspI RCATGY 1 cut(s) 798
OliI CACNNNNGTG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 1340
PctI GAATGC 2 cut(s) 453, 1156
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 452, 912, 1246, 1261
PleI GAGTC 2 cut(s) 207, 321
PluTI GGCGCC 1 cut(s) 659
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 2 cut(s) 207, 321
Ppu21I YACGTR 1 cut(s) 197
PsiI TTATAA 1 cut(s) 987
Psp6I CCWGG 3 cut(s) 217, 718, 1224
PspCI CACGTG 1 cut(s) 197
PspGI CCWGG 3 cut(s) 217, 718, 1224
PspN4I GGNNCC 2 cut(s) 614, 657
PspPI GGNCC 3 cut(s) 280, 521, 1291
PsuI RGATCY 1 cut(s) 752
PvuII CAGCTG 1 cut(s) 1247
RsaI GTAC 2 cut(s) 181, 420
RsaNI GTAC 2 cut(s) 180, 419
RseI CAYNNNNRTG 3 cut(s) 197, 582, 1176
SaqAI TTAA 8 cut(s) 129, 476, 566, 582, 885, 1313, 1424, 1450
SatI GCNGC 4 cut(s) 451, 911, 1245, 1260
Sau3AI GATC 3 cut(s) 64, 752, 994
Sau96I GGNCC 3 cut(s) 280, 521, 1291
SchI GAGTC 2 cut(s) 207, 322
ScrFI CCNGG 4 cut(s) 219, 720, 1156, 1226
SduI GDGCHC 1 cut(s) 1188
SfaNI GCATC 3 cut(s) 180, 259, 490
SfcI CTRYAG 2 cut(s) 57, 879
SfoI GGCGCC 1 cut(s) 657
SinI GGWCC 3 cut(s) 280, 521, 1291
SmiMI CAYNNNNRTG 3 cut(s) 197, 582, 1176
SmlI CTYRAG 2 cut(s) 998, 1312
SmoI CTYRAG 2 cut(s) 998, 1312
Sse9I AATT 9 cut(s) 240, 472, 508, 562, 591, 988, 1130, 1161, 1372
SseBI AGGCCT 1 cut(s) 1340
SsiI CCGC 2 cut(s) 873, 911
SspDI GGCGCC 1 cut(s) 655
SspMI CTAG 2 cut(s) 422, 1070
StuI AGGCCT 1 cut(s) 1340
StyD4I CCNGG 4 cut(s) 217, 718, 1154, 1224
StyI CCWWGG 2 cut(s) 1323, 1380
TaaI ACNGT 5 cut(s) 28, 418, 669, 710, 1087
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 211
TasI AATT 9 cut(s) 240, 472, 508, 562, 591, 988, 1130, 1161, 1372
TauI GCSGC 1 cut(s) 913
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 8 cut(s) 129, 476, 566, 582, 885, 1313, 1424, 1450
Tru9I TTAA 8 cut(s) 129, 476, 566, 582, 885, 1313, 1424, 1450
TscAI CASTG 5 cut(s) 451, 523, 674, 816, 1092
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 3 cut(s) 450, 1244, 1259
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 6 cut(s) 17, 88, 776, 1118, 1230, 1365
TspRI CASTG 5 cut(s) 451, 523, 674, 816, 1092
Vha464I CTTAAG 1 cut(s) 1312
VpaK11BI GGWCC 3 cut(s) 280, 521, 1291
XagI CCTNNNNNAGG 1 cut(s) 1073
XapI RAATTY 5 cut(s) 240, 472, 562, 1130, 1372
XceI RCATGY 1 cut(s) 798
XcmI CCANNNNNNNNNTGG 1 cut(s) 1360
XspI CTAG 2 cut(s) 422, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.