Rorug03G0040000
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003105
Physical Location & Seq
Forward (+)
3137467 .. 3138095
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0040000.1

Sequence Viewer

Length: 534 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGTTGCGGGGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAATGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGATGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCTGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCAAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.88

Weight (kDa)

9.39

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 28 - 89 3.6e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 76, 82, 265, 450, 529
AclWI GGATC 2 cut(s) 188, 364
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 220, 377
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 4 cut(s) 130, 193, 484, 509
AluI AGCT 4 cut(s) 130, 193, 484, 509
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 188, 364
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 416
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 486
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 329, 434
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 102, 162
BisI GCNGC 2 cut(s) 51, 529
BlpI GCTNAGC 1 cut(s) 485
BlsI GCNGC 2 cut(s) 52, 530
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 527
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 499
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 486
Bsp143I GATC 5 cut(s) 106, 180, 210, 308, 356
Bsp1720I GCTNAGC 1 cut(s) 485
BspACI CCGC 5 cut(s) 76, 82, 265, 450, 529
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 6, 155, 527
BspPI GGATC 2 cut(s) 188, 364
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 308, 356
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 5 cut(s) 109, 183, 213, 311, 359
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 106, 180, 210, 308, 356
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 180, 356
BstYI RGATCY 2 cut(s) 180, 356
BtsCI GGATG 2 cut(s) 37, 292
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 293, 301, 367, 397, 401, 424
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 485
DpnI GATC 5 cut(s) 108, 182, 212, 310, 358
DpnII GATC 5 cut(s) 106, 180, 210, 308, 356
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 256, 486
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 402
EcoT38I GRGCYC 2 cut(s) 256, 486
FaeI CATG 7 cut(s) 73, 296, 304, 370, 400, 404, 427
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 366, 396, 400, 423
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 51, 529
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 486
Fsp4HI GCNGC 2 cut(s) 51, 529
GluI GCNGC 2 cut(s) 51, 529
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 7 cut(s) 73, 296, 304, 370, 400, 404, 427
HinfI GANTC 3 cut(s) 94, 117, 172
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 335, 416
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 4 cut(s) 111, 177, 286, 439
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 523
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 400, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 370, 400, 404, 427
Kzo9I GATC 5 cut(s) 106, 180, 210, 308, 356
LmnI GCTCC 1 cut(s) 525
LpnPI CCDG 8 cut(s) 29, 67, 73, 203, 297, 495, 508, 508
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 452
MalI GATC 5 cut(s) 108, 182, 212, 310, 358
MboI GATC 5 cut(s) 106, 180, 210, 308, 356
MboII GAAGA 3 cut(s) 280, 283, 439
MflI RGATCY 2 cut(s) 180, 356
MhlI GDGCHC 3 cut(s) 256, 300, 486
MnlI CCTC 8 cut(s) 22, 29, 131, 171, 267, 396, 400, 437
Mph1103I ATGCAT 1 cut(s) 402
MroXI GAANNNNTTC 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 2 cut(s) 193, 531
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 495
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 210, 308, 356
NlaIII CATG 7 cut(s) 73, 296, 304, 370, 400, 404, 427
NlaIV GGNNCC 3 cut(s) 6, 155, 527
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 459
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 94, 117, 172
PkrI GCNGC 2 cut(s) 52, 530
PpuMI RGGWCCY 1 cut(s) 153
PscI ACATGT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 527
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 356
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 486
SatI GCNGC 2 cut(s) 51, 529
Sau3AI GATC 5 cut(s) 106, 180, 210, 308, 356
Sau96I GGNCC 2 cut(s) 153, 276
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 486
SetI ASST 9 cut(s) 92, 132, 155, 195, 228, 278, 448, 486, 511
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SsiI CCGC 5 cut(s) 76, 82, 265, 450, 529
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 3 cut(s) 94, 117, 172
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 281, 377, 440
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.