Rorug03G0039800
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003105
Physical Location & Seq
Reverse (-)
3092898 .. 3095579
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0039800.1

Sequence Viewer

Length: 1017 bp
ATGGCTCTCTCCTCGTTTTCGTCGTCACCGTCCAAGGGCATAGTGGTAACTGTCCCGGTACTGGTCCTCTCGGCCTCGGTCGCCGCCGTCTTCTTCTTCTTCCTCCTCTCCTCTCTCTCGTCCTGCTCCTGCGGCGGCGGCGGCCGTATCGCCGTCGCCGGCGTTCCTAGCCAGTCCGGCGGAAGAGATGTGGCTGCGGCGACCGGAAGGTGGGAGAGCGGGGAGACGATACGGTCGTCGAAGGAGGATGTGGAGTGGGTGAAGGATCAGATCCGAGTGAATGGGCTGCATATGCAGGACAACGTGTTGCGTAAGGGAATTAACCCTAGGACTCGGGCTCAGCAGCTCCAGGATCTCTTGCAATACAAGGGTATATCGCACTATGAAGGACCTGATTCTGGAAATCACACTGCCCTCCCATGCCCTGGTGAGCTCCTTACTGAAGAGCACCACAGTAACTATGGTGAGCCTTGGGCAGGGGGGCGAGATGTTTTTGAGTTCCTTGCTCAGTCCAGCCATCTTAAGCCTGATTCAAAGGTTCTTGAGATTGGCTGTGGTACCCTCCGAGTTGGTTTGCACTTCATTCGTTATCTTCATCCCGGACACTTCCACTGTCTCGAAAGAGATGAGCTCTCACTAATGGCTGCCTTTAGATATGAGCTTCCTTCCCAAGGTCTTCTTCATAAGCGCCCTTTAATTGTGAAAGGTGACAACATGGACTTCTCTAGATTTGGTTCAGACGTTGTGTATGATTTGATCTATGCTAGTGCTGTGTTTCTTCATATGCCTGGTGATCTTGTGTGGCTTGGGTTGGAGAGATTGACAAATAAATTGAAACCTTATGATGGGCGAATCTTTGTGTCCCATAATATCAAGTTCTGCTCACGGTTGGGAGGAGAAGAGTGTACAAAACGGCTTACGAAGCTGGGCCTGGAGTATGTCGGAAAACATACACACGACAGCTTGCTTTTTAATCATTATGAGATCTGGTTTGAGTTTAAGCGGACAAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

338

Amino Acids

37.61

Weight (kDa)

7.71

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_12 PF08242 181 - 283 1.6e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 9 cut(s) 84, 132, 135, 138, 141, 180, 197, 219, 1003
AclWI GGATC 3 cut(s) 265, 273, 360
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 3 cut(s) 60, 559, 907
AfiI CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
AflII CTTAAG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 2 cut(s) 534, 835
AjnI CCWGG 4 cut(s) 348, 424, 787, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 6 cut(s) 346, 433, 631, 661, 925, 963
AluI AGCT 6 cut(s) 346, 433, 631, 661, 925, 963
Alw21I GWGCWC 3 cut(s) 435, 450, 633
Alw26I GTCTC 2 cut(s) 218, 620
AlwI GGATC 3 cut(s) 265, 273, 360
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 3 cut(s) 72, 142, 928
ApeKI GCWGC 4 cut(s) 194, 286, 343, 644
Asp718I GGTACC 1 cut(s) 557
AspA2I CCTAGG 1 cut(s) 326
AspLEI GCGC 1 cut(s) 690
AspS9I GGNCC 3 cut(s) 64, 389, 928
AsuC2I CCSGG 2 cut(s) 56, 600
AsuHPI GGTGA 6 cut(s) 18, 271, 440, 476, 719, 803
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 64, 389
AvrII CCTAGG 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 3 cut(s) 340, 435, 633
BbsI GAAGAC 2 cut(s) 82, 668
Bbv12I GWGCWC 3 cut(s) 435, 450, 633
BbvI GCAGC 4 cut(s) 181, 273, 355, 631
BccI CCATC 2 cut(s) 525, 839
BceAI ACGGC 4 cut(s) 71, 129, 137, 929
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 4 cut(s) 350, 426, 789, 932
BcnI CCSGG 2 cut(s) 56, 600
BcoDI GTCTC 2 cut(s) 218, 620
BfaI CTAG 4 cut(s) 168, 327, 726, 765
BfoI RGCGCY 1 cut(s) 691
BfrI CTTAAG 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 177
BglII AGATCT 1 cut(s) 984
BlnI CCTAGG 1 cut(s) 326
BlpI GCTNAGC 1 cut(s) 339
Bme1390I CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
Bme18I GGWCC 2 cut(s) 64, 389
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 64, 389, 928
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
BpiI GAAGAC 2 cut(s) 82, 668
BplI GAGNNNNNCTC 2 cut(s) 615, 647
BpmI CTGGAG 2 cut(s) 332, 953
Bpu1102I GCTNAGC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 2 cut(s) 56, 600
BsaJI CCNNGG 6 cut(s) 33, 75, 326, 424, 470, 670
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 66, 172
BseBI CCWGG 4 cut(s) 350, 426, 789, 932
BseDI CCNNGG 6 cut(s) 33, 75, 326, 424, 470, 670
BseGI GGATG 2 cut(s) 253, 595
BseLI CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
BseMII CTCAG 2 cut(s) 353, 521
BseNI ACTGG 2 cut(s) 66, 172
BseRI GAGGAG 3 cut(s) 95, 100, 909
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 181, 273, 355, 631
BseYI CCCAGC 1 cut(s) 925
Bsh1285I CGRYCG 4 cut(s) 81, 145, 204, 236
BshFI GGCC 3 cut(s) 74, 144, 930
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 4 cut(s) 81, 145, 204, 236
BsiHKAI GWGCWC 3 cut(s) 435, 450, 633
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 5 cut(s) 56, 159, 177, 204, 600
BslFI GGGAC 2 cut(s) 38, 847
BslI CCNNNNNNNGG 8 cut(s) 35, 61, 210, 398, 425, 476, 671, 845
BsmAI GTCTC 2 cut(s) 218, 620
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 38, 847
BsnI GGCC 3 cut(s) 74, 144, 930
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 4 cut(s) 340, 435, 450, 633
Bsp1407I TGTACA 1 cut(s) 905
Bsp143I GATC 6 cut(s) 265, 270, 352, 756, 793, 984
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 9 cut(s) 84, 132, 135, 138, 141, 180, 197, 219, 1003
BspANI GGCC 3 cut(s) 74, 144, 930
BspCNI CTCAG 2 cut(s) 352, 520
BspLI GGNNCC 1 cut(s) 559
BspPI GGATC 3 cut(s) 265, 273, 360
BspQI GCTCTTC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 521
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 905
BsrI ACTGG 2 cut(s) 66, 172
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 6 cut(s) 33, 75, 326, 424, 470, 670
BssMI GATC 6 cut(s) 265, 270, 352, 756, 793, 984
BssT1I CCWWGG 4 cut(s) 33, 326, 470, 670
Bst2UI CCWGG 4 cut(s) 350, 426, 789, 932
Bst4CI ACNGT 6 cut(s) 30, 52, 234, 455, 614, 888
Bst6I CTCTTC 3 cut(s) 178, 438, 894
BstAFI CTTAAG 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 905
BstC8I GCNNGC 2 cut(s) 160, 965
BstDEI CTNAG 3 cut(s) 339, 507, 1014
BstENI CCTNNNNNAGG 2 cut(s) 474, 669
BstF5I GGATG 2 cut(s) 253, 595
BstH2I RGCGCY 1 cut(s) 691
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 6 cut(s) 268, 273, 355, 759, 796, 987
BstMAI GTCTC 2 cut(s) 218, 620
BstMBI GATC 6 cut(s) 265, 270, 352, 756, 793, 984
BstMCI CGRYCG 4 cut(s) 81, 145, 204, 236
BstMWI GCNNNNNNNGC 8 cut(s) 80, 132, 138, 141, 168, 177, 292, 922
BstNI CCWGG 4 cut(s) 350, 426, 789, 932
BstSCI CCNGG 6 cut(s) 54, 348, 424, 598, 787, 930
BstV1I GCAGC 4 cut(s) 181, 273, 355, 631
BstV2I GAAGAC 2 cut(s) 82, 668
BstX2I RGATCY 3 cut(s) 270, 352, 984
BstYI RGATCY 3 cut(s) 270, 352, 984
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 3 cut(s) 74, 144, 930
BtsCI GGATG 2 cut(s) 253, 595
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 610
Cac8I GCNNGC 2 cut(s) 160, 965
CfoI GCGC 1 cut(s) 690
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 64, 389, 928
Csp6I GTAC 3 cut(s) 59, 558, 906
CviAII CATG 2 cut(s) 420, 715
CviQI GTAC 3 cut(s) 59, 558, 906
DdeI CTNAG 3 cut(s) 339, 507, 1014
DpnI GATC 6 cut(s) 267, 272, 354, 758, 795, 986
DpnII GATC 6 cut(s) 265, 270, 352, 756, 793, 984
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 3 cut(s) 178, 438, 894
EarI CTCTTC 3 cut(s) 178, 438, 894
EciI GGCGGA 1 cut(s) 195
Ecl136II GAGCTC 2 cut(s) 433, 631
EclXI CGGCCG 1 cut(s) 142
Eco130I CCWWGG 4 cut(s) 33, 326, 470, 670
Eco24I GRGCYC 3 cut(s) 340, 435, 633
Eco47I GGWCC 2 cut(s) 64, 389
Eco52I CGGCCG 1 cut(s) 142
Eco53kI GAGCTC 2 cut(s) 433, 631
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 2 cut(s) 433, 631
EcoNI CCTNNNNNAGG 2 cut(s) 474, 669
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 4 cut(s) 348, 424, 787, 930
EcoT14I CCWWGG 4 cut(s) 33, 326, 470, 670
EcoT38I GRGCYC 3 cut(s) 340, 435, 633
ErhI CCWWGG 4 cut(s) 33, 326, 470, 670
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 423, 718
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 2 cut(s) 38, 847
FatI CATG 2 cut(s) 419, 714
FauI CCCGC 1 cut(s) 212
FauNDI CATATG 2 cut(s) 291, 783
FokI GGATG 2 cut(s) 260, 582
FriOI GRGCYC 3 cut(s) 340, 435, 633
FspBI CTAG 4 cut(s) 168, 327, 726, 765
GlaI GCGC 1 cut(s) 689
GsaI CCCAGC 1 cut(s) 929
GsuI CTGGAG 2 cut(s) 332, 953
HaeII RGCGCY 1 cut(s) 691
HaeIII GGCC 3 cut(s) 74, 144, 930
HapII CCGG 5 cut(s) 56, 159, 177, 204, 600
HhaI GCGC 1 cut(s) 690
Hin1II CATG 2 cut(s) 423, 718
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HinfI GANTC 4 cut(s) 331, 395, 530, 852
HpaII CCGG 5 cut(s) 56, 159, 177, 204, 600
HphI GGTGA 6 cut(s) 18, 271, 440, 476, 719, 803
Hpy166II GTNNAC 1 cut(s) 906
Hpy188I TCNGA 5 cut(s) 270, 275, 566, 739, 944
Hpy188III TCNNGA 4 cut(s) 399, 542, 617, 726
Hpy8I GTNNAC 1 cut(s) 906
Hpy99I CGWCG 3 cut(s) 25, 158, 241
HpyAV CCTTC 5 cut(s) 201, 235, 256, 380, 675
HpyCH4III ACNGT 6 cut(s) 30, 52, 234, 455, 614, 888
HpyCH4IV ACGT 2 cut(s) 303, 741
HpyCH4V TGCA 4 cut(s) 289, 295, 361, 577
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 132, 138, 141, 168, 177, 292, 922
HpyF3I CTNAG 3 cut(s) 339, 507, 1014
HpySE526I ACGT 2 cut(s) 303, 741
Hsp92II CATG 2 cut(s) 423, 718
HspAI GCGC 1 cut(s) 688
KpnI GGTACC 1 cut(s) 561
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 6 cut(s) 265, 270, 352, 756, 793, 984
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 3 cut(s) 131, 351, 438
Lsp1109I GCAGC 4 cut(s) 181, 273, 355, 631
MaeI CTAG 4 cut(s) 168, 327, 726, 765
MaeII ACGT 2 cut(s) 303, 741
MaeIII GTNAC 4 cut(s) 24, 46, 455, 707
MalI GATC 6 cut(s) 267, 272, 354, 758, 795, 986
MbiI CCGCTC 1 cut(s) 219
MboI GATC 6 cut(s) 265, 270, 352, 756, 793, 984
MflI RGATCY 3 cut(s) 270, 352, 984
MhlI GDGCHC 4 cut(s) 340, 435, 450, 633
MluCI AATT 3 cut(s) 318, 696, 830
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 792, 922
MreI CGCCGGCG 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 5 cut(s) 321, 522, 695, 972, 999
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 5 cut(s) 56, 159, 177, 204, 600
MspR9I CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
MvaI CCWGG 4 cut(s) 350, 426, 789, 932
MwoI GCNNNNNNNGC 8 cut(s) 80, 132, 138, 141, 168, 177, 292, 922
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 2 cut(s) 56, 600
NdeI CATATG 2 cut(s) 291, 783
NdeII GATC 6 cut(s) 265, 270, 352, 756, 793, 984
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 423, 718
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 24, 707
PciSI GCTCTTC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 26, 233
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 395, 530, 852
PflMI CCANNNNNTGG 1 cut(s) 425
PfoI TCCNGGA 2 cut(s) 348, 598
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 389
Psp124BI GAGCTC 2 cut(s) 435, 633
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 4 cut(s) 348, 424, 787, 930
PspFI CCCAGC 1 cut(s) 925
PspGI CCWGG 4 cut(s) 348, 424, 787, 930
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 3 cut(s) 64, 389, 928
PspPPI RGGWCCY 1 cut(s) 389
PsuI RGATCY 3 cut(s) 270, 352, 984
RsaI GTAC 3 cut(s) 60, 559, 907
RsaNI GTAC 3 cut(s) 59, 558, 906
SacI GAGCTC 2 cut(s) 435, 633
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 5 cut(s) 321, 522, 695, 972, 999
Sau3AI GATC 6 cut(s) 265, 270, 352, 756, 793, 984
Sau96I GGNCC 3 cut(s) 64, 389, 928
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 6 cut(s) 56, 350, 426, 600, 789, 932
SduI GDGCHC 4 cut(s) 340, 435, 450, 633
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 2 cut(s) 64, 389
SmlI CTYRAG 2 cut(s) 521, 542
SmoI CTYRAG 2 cut(s) 521, 542
Sse9I AATT 3 cut(s) 318, 696, 830
SsiI CCGC 9 cut(s) 84, 132, 135, 138, 141, 180, 197, 219, 1003
SspMI CTAG 4 cut(s) 168, 327, 726, 765
SstI GAGCTC 2 cut(s) 435, 633
StyD4I CCNGG 6 cut(s) 54, 348, 424, 598, 787, 930
StyI CCWWGG 4 cut(s) 33, 326, 470, 670
TaaI ACNGT 6 cut(s) 30, 52, 234, 455, 614, 888
TaiI ACGT 2 cut(s) 306, 744
TaqI TCGA 2 cut(s) 239, 618
TaqII GACCGA 1 cut(s) 67
TasI AATT 3 cut(s) 318, 696, 830
TatI WGTACW 1 cut(s) 905
TauI GCSGC 6 cut(s) 86, 135, 138, 141, 144, 200
TfiI GAWTC 3 cut(s) 395, 530, 852
Tru1I TTAA 5 cut(s) 321, 522, 695, 972, 999
Tru9I TTAA 5 cut(s) 321, 522, 695, 972, 999
TscAI CASTG 2 cut(s) 415, 617
TseFI GTSAC 2 cut(s) 24, 707
TseI GCWGC 4 cut(s) 194, 286, 343, 644
Tsp45I GTSAC 2 cut(s) 24, 707
TspDTI ATGAA 5 cut(s) 399, 571, 584, 671, 770
TspRI CASTG 2 cut(s) 415, 617
Van91I CCANNNNNTGG 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 64, 389
XagI CCTNNNNNAGG 2 cut(s) 474, 669
XbaI TCTAGA 1 cut(s) 725
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 458
XmaJI CCTAGG 1 cut(s) 326
XspI CTAG 4 cut(s) 168, 327, 726, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.