Rorug03G0039700
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003105
Physical Location & Seq
Reverse (-)
3089704 .. 3092534
2831 bp
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UTR
Exon/CDS
Intron
Rorug03G0039700.1

Sequence Viewer

Length: 684 bp
ATGCATTCTTCACGAATCGTAAGCACAACATTAAGCAAGAAAAGCTGGAGTTTCCTGTCCTCTCTATCCGGCTATTCTCACAGTGACAGTCACCACACTCCATCACTGCACCGCTCGATCTTCTCCACGACGCAACTAGACAACTCATGGGTGAACAAGATCAAGGGGGTCTTCACCGGCAATAAGACCTCCCCAGATGAACCCAAGCTCAGCTCCGACTCATTCACCCTGCTCCGATTTGCGGATGAGATGAAGACTGCTAGAAGAGTGGGGGCATTCAAGCAATACATTGTTGGGAGAAGCAGTGAAGCGACTTTTGTCGATGCATTTGAGAAGCAGGAATCGATAATACGATATCTCGGAGGATTTGATTCTACTGGAGAGAATCTCCAAATCACGCAAAAACAAGAAGCAGCAAAGCATTGTAAATGCACAATAGCTGATGTTGAGAATGCACTTGCAAAGTTCACCTGGGCTAGAGAAGCACACAACAAGATGGAAAAGTTGAAGGCAGAAGGGAAACCAATTCCAACAAACATTGGCGAGGTGCAAAAGTTGATGGGTTCAACCCCATTTGACCTTGCTCAGTCTAATTTGGCCAAGAGTGGGCAAATTAGTAGGAATGCGCTTTGTCCATGTGGTTCCAAGAAGAGATACAAGCGGTGCTGTGGAAAGGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

227

Amino Acids

25.23

Weight (kDa)

9.55

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEC-C PF02810 207 - 225 1.2e-06 SEC-C motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 3 cut(s) 112, 242, 661
AcoI YGGCCR 1 cut(s) 597
AfiI CCNNNNNNNGG 2 cut(s) 241, 606
AgsI TTSAA 3 cut(s) 280, 508, 567
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 4 cut(s) 45, 208, 213, 440
AluI AGCT 4 cut(s) 45, 208, 213, 440
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 628
AsuHPI GGTGA 5 cut(s) 83, 163, 166, 217, 460
BalI TGGCCA 1 cut(s) 599
BbsI GAAGAC 2 cut(s) 163, 260
BbvI GCAGC 1 cut(s) 425
BccI CCATC 3 cut(s) 109, 490, 553
BciT130I CCWGG 1 cut(s) 472
BfaI CTAG 3 cut(s) 137, 261, 477
BisI GCNGC 1 cut(s) 414
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 313
BoxI GACNNNNGTC 1 cut(s) 317
BpiI GAAGAC 2 cut(s) 163, 260
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 2 cut(s) 67, 399
Bpu1102I GCTNAGC 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 606
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 382
BseBI CCWGG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 241, 606
BseMII CTCAG 2 cut(s) 223, 599
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 344
BsiSI CCGG 2 cut(s) 69, 177
BslI CCNNNNNNNGG 2 cut(s) 241, 606
BsmI GAATGC 4 cut(s) 4, 275, 457, 628
BsnI GGCC 1 cut(s) 599
Bsp143I GATC 2 cut(s) 117, 159
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 3 cut(s) 112, 242, 661
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 2 cut(s) 222, 598
BspDI ATCGAT 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 643
BsrBI CCGCTC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 2 cut(s) 117, 159
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 83, 89
Bst6I CTCTTC 2 cut(s) 259, 644
BstDEI CTNAG 2 cut(s) 209, 585
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 2 cut(s) 120, 162
BstMBI GATC 2 cut(s) 117, 159
BstMWI GCNNNNNNNGC 2 cut(s) 42, 482
BstNI CCWGG 1 cut(s) 472
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 425
BstV2I GAAGAC 2 cut(s) 163, 260
Bsu15I ATCGAT 1 cut(s) 344
BsuRI GGCC 1 cut(s) 599
BsuTUI ATCGAT 1 cut(s) 344
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 2 cut(s) 104, 310
BtsIMutI CAGTG 3 cut(s) 88, 104, 310
CfoI GCGC 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 344
CseI GACGC 1 cut(s) 139
CviAII CATG 2 cut(s) 147, 636
CviJI RGCY 7 cut(s) 45, 72, 208, 213, 440, 476, 599
CviKI_1 RGCY 7 cut(s) 45, 72, 208, 213, 440, 476, 599
DdeI CTNAG 2 cut(s) 209, 585
DpnI GATC 2 cut(s) 119, 161
DpnII GATC 2 cut(s) 117, 159
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 259, 644
EarI CTCTTC 2 cut(s) 259, 644
Eco32I GATATC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 470
EcoRV GATATC 1 cut(s) 356
EcoT22I ATGCAT 2 cut(s) 6, 328
FaeI CATG 2 cut(s) 150, 639
FaiI YATR 2 cut(s) 148, 637
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 2 cut(s) 146, 635
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 3 cut(s) 137, 261, 477
GlaI GCGC 1 cut(s) 627
GluI GCNGC 1 cut(s) 414
GsuI CTGGAG 2 cut(s) 67, 399
HaeIII GGCC 1 cut(s) 599
HapII CCGG 2 cut(s) 69, 177
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 628
Hin1II CATG 2 cut(s) 150, 639
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HinfI GANTC 5 cut(s) 15, 218, 341, 371, 385
HpaII CCGG 2 cut(s) 69, 177
HphI GGTGA 5 cut(s) 83, 163, 166, 217, 460
Hpy166II GTNNAC 2 cut(s) 154, 468
Hpy188I TCNGA 3 cut(s) 217, 236, 362
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 154, 468
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 502, 509
HpyCH4III ACNGT 2 cut(s) 83, 89
HpyCH4V TGCA 7 cut(s) 4, 109, 326, 432, 455, 461, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 482
HpyF3I CTNAG 2 cut(s) 209, 585
Hsp92II CATG 2 cut(s) 150, 639
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 2 cut(s) 117, 159
LmnI GCTCC 2 cut(s) 218, 237
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 1 cut(s) 313
MaeI CTAG 3 cut(s) 137, 261, 477
MaeIII GTNAC 2 cut(s) 83, 89
MalI GATC 2 cut(s) 119, 161
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 117, 159
MboII GAAGA 5 cut(s) 112, 163, 265, 276, 661
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 3 cut(s) 525, 592, 612
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 240, 554
MnlI CCTC 4 cut(s) 70, 199, 356, 538
Mox20I TGGCCA 1 cut(s) 599
Mph1103I ATGCAT 2 cut(s) 6, 328
MscI TGGCCA 1 cut(s) 599
MseI TTAA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 599
MspI CCGG 2 cut(s) 69, 177
MspR9I CCNGG 1 cut(s) 472
Mva1269I GAATGC 4 cut(s) 4, 275, 457, 628
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 2 cut(s) 42, 482
NdeII GATC 2 cut(s) 117, 159
NlaIII CATG 2 cut(s) 150, 639
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 83, 89
NsiI ATGCAT 2 cut(s) 6, 328
PctI GAATGC 4 cut(s) 4, 275, 457, 628
PfeI GAWTC 4 cut(s) 15, 341, 371, 385
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 643
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 2 cut(s) 117, 159
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 472
SetI ASST 8 cut(s) 47, 191, 210, 215, 442, 473, 549, 582
SfaNI GCATC 1 cut(s) 313
Sse9I AATT 3 cut(s) 525, 592, 612
SsiI CCGC 3 cut(s) 112, 242, 661
SspMI CTAG 3 cut(s) 137, 261, 477
StyD4I CCNGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 83, 89
TaqI TCGA 3 cut(s) 116, 321, 344
TasI AATT 3 cut(s) 525, 592, 612
TfiI GAWTC 4 cut(s) 15, 341, 371, 385
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 3 cut(s) 88, 111, 310
TseFI GTSAC 2 cut(s) 83, 89
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 2 cut(s) 83, 89
TspDTI ATGAA 2 cut(s) 213, 266
TspRI CASTG 3 cut(s) 88, 111, 310
XspI CTAG 3 cut(s) 137, 261, 477
Zsp2I ATGCAT 2 cut(s) 6, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.