FvH4_6g10050

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017685
Physical Location & Seq
Reverse (-)
5959948 .. 5960760
813 bp
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UTR
Exon/CDS
Intron
FvH4_6g10050.t1

Sequence Viewer

Length: 450 bp
ATGGTTACGGTGTTGGGATTGATGGAGAAGAGAGTATGTCGTCCAACATTATCAATACCACTCCTTGCAATACTGAATAGAAGTGGTGCAAGTTCTTCATCAAAATCAAGAGCCAAAATGTTGTCTCTAGAAACCATATCTCAATACTTCTACATGCCGATGGCTCAAGCAGCTGAAGAAATGAATGTCAGTGTGACAACTCTTAAGAAAAGATGTCGAGAGCTGCGCATTAAACGTTGGCCCAATCGAAAGTTGAACAGCTTAAAGAACTTAGAAAAAAGCATTCAGGACTCCGGGAAGAACGAAGAAGAGCTGGAGTTATTGGAGAAGGAGAGGAAGCTGGTTGAGGAAGTTCCCGATTTGCAACTCGAGGAAAAGACGAAGCGGCTCAGACAGGCTTATCTTTATAAGGCCCAAAGCTCCTCCAGATCAAAAACAGCTTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

150

Amino Acids

17.11

Weight (kDa)

9.84

Isoelectric Point (pI)

69.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 41 - 88 1e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
Acc16I TGCGCA 1 cut(s) 227
AciI CCGC 1 cut(s) 385
AclI AACGTT 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 195
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 7 cut(s) 173, 223, 261, 313, 340, 420, 440
AluI AGCT 7 cut(s) 173, 223, 261, 313, 340, 420, 440
Alw26I GTCTC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 2 cut(s) 239, 411
ApeKI GCWGC 2 cut(s) 170, 223
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 240, 412
AsuC2I CCSGG 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 368
BbvI GCAGC 2 cut(s) 182, 210
BccI CCATC 2 cut(s) 16, 154
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 3 cut(s) 171, 224, 386
BlsI GCNGC 3 cut(s) 172, 225, 387
Bme1390I CCNGG 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 240, 412
BmrFI CCNGG 1 cut(s) 295
BpmI CTGGAG 2 cut(s) 335, 409
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 2 cut(s) 182, 210
BshFI GGCC 2 cut(s) 241, 413
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 2 cut(s) 241, 413
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 1 cut(s) 428
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 241, 413
BspCNI CTCAG 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 203
BssMI GATC 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 23, 303
BstAFI CTTAAG 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 271, 389
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 431
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 428
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 182, 210
BsuRI GGCC 2 cut(s) 241, 413
BtsIMutI CAGTG 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 240, 412
CviAII CATG 1 cut(s) 154
DdeI CTNAG 2 cut(s) 271, 389
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
Eam1104I CTCTTC 2 cut(s) 23, 303
EarI CTCTTC 2 cut(s) 23, 303
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 368
FaeI CATG 1 cut(s) 157
FaiI YATR 4 cut(s) 37, 137, 155, 408
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 171, 224, 386
Fsp4HI GCNGC 3 cut(s) 171, 224, 386
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 1 cut(s) 227
GluI GCNGC 3 cut(s) 171, 224, 386
GsuI CTGGAG 2 cut(s) 335, 409
HaeIII GGCC 2 cut(s) 241, 413
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 6 cut(s) 108, 128, 218, 287, 356, 426
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 68, 89, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 271, 389
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 428
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 6 cut(s) 272, 299, 307, 326, 380, 439
Lsp1109I GCAGC 2 cut(s) 182, 210
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 4, 193
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MboII GAAGA 6 cut(s) 40, 87, 188, 310, 317, 320
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 327, 340, 364, 433
MseI TTAA 3 cut(s) 204, 231, 263
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 295
NdeII GATC 1 cut(s) 428
NlaIII CATG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 227
NspI RCATGY 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 303
PctI GAATGC 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 3 cut(s) 172, 225, 387
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PsiI TTATAA 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 235
PspPI GGNCC 2 cut(s) 240, 412
PspXI VCTCGAGB 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 204, 231, 263
SatI GCNGC 3 cut(s) 171, 224, 386
Sau3AI GATC 1 cut(s) 428
Sau96I GGNCC 2 cut(s) 240, 412
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 295
SetI ASST 8 cut(s) 175, 225, 238, 263, 315, 342, 422, 442
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 3 cut(s) 165, 203, 368
SmoI CTYRAG 3 cut(s) 165, 203, 368
SsiI CCGC 1 cut(s) 385
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 217, 247, 369
TauI GCSGC 1 cut(s) 388
Tru1I TTAA 3 cut(s) 204, 231, 263
Tru9I TTAA 3 cut(s) 204, 231, 263
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 170, 223
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 87, 197
TspRI CASTG 1 cut(s) 196
Vha464I CTTAAG 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 368
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.