RLG00000024984

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017685
Physical Location & Seq
Forward (+)
41072271 .. 41075672
3402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024984

Sequence Viewer

Length: 861 bp
ATGTATGTTCTCCTTGCTTTTACAATGTTTCTCAGTGGAAGTGAGTATGCTCCATCGGGGTGGCAAGATGAATTGCTTTTAACAGATGATACTTTCCTTGGAGATGGATTTGGTGTTGAGATTGATGGAGAAGACGGTATGTCCAACAATATTAATACCACTTCTTGCAATACTGAAGATGGAAGTGGTATTGCTAGTTCTTCTTCAAAACCATCAAAAGCCAAAATGTTGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTCGAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGGTATTCATCGTTGGCCTTGCCGAAAGTTGAACAGCGTAAAGAACCTAGAAGAAAGCATTCAGGAGTTTGGGAAGAATGAAGAAGAGCTGGAGTTTTTGGAGAAAGAGAGGAAAATGATTGAGCAAGTTCCCGATTTGCAACTCGAGGAAAAGACGAAGCGGCTCAGGCATGCTTATTTTAAGGCTGCAAAGCTGTGTACCAAGGTGTTGGAGCTTGAGGGTAAGAATGTAAAGGCCCTGTACAGAAGCGCTCAGGCTTATATCCAGCTGGCAGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGATCATGAAATAGACCCTGACAACAAAAATGTGCAGTTGGAGTACAAAACTTTGAAGGAGAAGATGAAAGGATTCAATACAAAGGAGGCAAAGTTTTATGGCAACATGTTTGCTAAACTGAATAAGGGTTCCAATAAGGATGTTGAACCAATGAGCGTAGACAGCAAGGCACAGGCGGAGGGGAGGGAGTGCAAAATCGCATTACCTGCTACTTCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

287

Amino Acids

32.36

Weight (kDa)

5.33

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 77 - 124 1.4e-20 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 853
AccI GTMKAC 1 cut(s) 798
AciI CCGC 2 cut(s) 493, 815
AcuI CTGAAG 2 cut(s) 195, 303
AfaI GTAC 3 cut(s) 532, 575, 683
AfeI AGCGCT 1 cut(s) 583
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 744
AgsI TTSAA 5 cut(s) 207, 364, 694, 715, 785
AhdI GACNNNNNGTC 1 cut(s) 139
AluBI AGCT 6 cut(s) 281, 421, 526, 547, 601, 625
AluI AGCT 6 cut(s) 281, 421, 526, 547, 601, 625
Alw26I GTCTC 1 cut(s) 301
Ama87I CYCGRG 2 cut(s) 273, 476
Aor51HI AGCGCT 1 cut(s) 583
AoxI GGCC 2 cut(s) 347, 567
ApeKI GCWGC 2 cut(s) 278, 518
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 2 cut(s) 390, 710
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 1 cut(s) 568
AvaI CYCGRG 2 cut(s) 273, 476
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 290, 505
BccI CCATC 5 cut(s) 61, 98, 119, 173, 220
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 195, 380
BfoI RGCGCY 1 cut(s) 585
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 853
BisI GCNGC 3 cut(s) 279, 494, 519
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 3 cut(s) 280, 495, 520
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 2 cut(s) 273, 476
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 769
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 497, 585
Bpu1102I GCTNAGC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 569
BsaJI CCNNGG 2 cut(s) 97, 534
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bse1I ACTGG 1 cut(s) 855
BseDI CCNNGG 2 cut(s) 97, 534
BseGI GGATG 1 cut(s) 784
BseMII CTCAG 4 cut(s) 46, 511, 599, 612
BseNI ACTGG 1 cut(s) 855
BseXI GCAGC 2 cut(s) 290, 505
BsgI GTGCAG 1 cut(s) 692
BshFI GGCC 2 cut(s) 349, 569
BsiHKCI CYCGRG 2 cut(s) 273, 476
BslFI GGGAC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 2 cut(s) 349, 569
BsoBI CYCGRG 2 cut(s) 273, 476
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 1 cut(s) 640
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 2 cut(s) 493, 815
BspANI GGCC 2 cut(s) 349, 569
BspCNI CTCAG 4 cut(s) 45, 510, 598, 613
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 853
BspQI GCTCTTC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 311
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 1 cut(s) 855
BssECI CCNNGG 2 cut(s) 97, 534
BssMI GATC 1 cut(s) 640
BssT1I CCWWGG 2 cut(s) 97, 534
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 845
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 504, 603
BstDEI CTNAG 4 cut(s) 32, 497, 585, 621
BstF5I GGATG 1 cut(s) 784
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 1 cut(s) 643
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 3 cut(s) 499, 801, 845
BstNSI RCATGY 3 cut(s) 265, 506, 748
BstV1I GCAGC 2 cut(s) 290, 505
BstV2I GAAGAC 1 cut(s) 138
BstXI CCANNNNNNTGG 2 cut(s) 60, 541
BsuRI GGCC 2 cut(s) 349, 569
BtsCI GGATG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 504, 603
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 1 cut(s) 568
Csp6I GTAC 3 cut(s) 531, 574, 682
CviAII CATG 4 cut(s) 262, 503, 644, 745
CviQI GTAC 3 cut(s) 531, 574, 682
DdeI CTNAG 4 cut(s) 32, 497, 585, 621
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 830
Eco130I CCWWGG 2 cut(s) 97, 534
Eco47III AGCGCT 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 195, 303
Eco88I CYCGRG 2 cut(s) 273, 476
EcoO109I RGGNCCY 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 97, 534
ErhI CCWWGG 2 cut(s) 97, 534
FaeI CATG 4 cut(s) 265, 506, 647, 748
FaqI GGGAC 1 cut(s) 217
FatI CATG 4 cut(s) 261, 502, 643, 744
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 3 cut(s) 279, 494, 519
FokI GGATG 1 cut(s) 791
Fsp4HI GCNGC 3 cut(s) 279, 494, 519
FspBI CTAG 2 cut(s) 195, 380
GlaI GCGC 1 cut(s) 583
GluI GCNGC 3 cut(s) 279, 494, 519
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 2 cut(s) 349, 569
HhaI GCGC 1 cut(s) 584
Hin1II CATG 4 cut(s) 265, 506, 647, 748
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HinfI GANTC 1 cut(s) 711
Hpy166II GTNNAC 2 cut(s) 531, 799
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 5 cut(s) 326, 395, 464, 634, 644
Hpy8I GTNNAC 2 cut(s) 531, 799
HpyAV CCTTC 1 cut(s) 688
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 5 cut(s) 168, 472, 521, 673, 831
HpyF10VI GCNNNNNNNGC 3 cut(s) 499, 801, 845
HpyF3I CTNAG 4 cut(s) 32, 497, 585, 621
Hsp92II CATG 4 cut(s) 265, 506, 647, 748
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 1 cut(s) 640
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 55, 544
LpnPI CCDG 9 cut(s) 380, 407, 484, 572, 584, 587, 611, 669, 797
Lsp1109I GCAGC 2 cut(s) 290, 505
MaeI CTAG 2 cut(s) 195, 380
MaeIII GTNAC 1 cut(s) 301
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MluCI AATT 1 cut(s) 71
MmeI TCCRAC 3 cut(s) 168, 522, 657
MnlI CCTC 6 cut(s) 435, 472, 544, 718, 811, 816
MroXI GAANNNNTTC 2 cut(s) 390, 710
MseI TTAA 5 cut(s) 80, 153, 312, 513, 859
MslI CAYNNNNRTG 1 cut(s) 58
MspA1I CMGCKG 2 cut(s) 281, 601
MspCI CTTAAG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 499, 801, 845
NdeII GATC 1 cut(s) 640
NlaIII CATG 4 cut(s) 265, 506, 647, 748
NlaIV GGNNCC 1 cut(s) 769
NspI RCATGY 3 cut(s) 265, 506, 748
PaeI GCATGC 1 cut(s) 506
PaeR7I CTCGAG 2 cut(s) 273, 476
PagI TCATGA 1 cut(s) 643
PciI ACATGT 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 2 cut(s) 390, 710
PfeI GAWTC 1 cut(s) 711
PkrI GCNGC 3 cut(s) 280, 495, 520
PscI ACATGT 1 cut(s) 744
PshBI ATTAAT 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 1 cut(s) 568
PspXI VCTCGAGB 2 cut(s) 273, 476
PsrI GAACNNNNNNTAC 2 cut(s) 181, 213
PvuII CAGCTG 2 cut(s) 281, 601
RsaI GTAC 3 cut(s) 532, 575, 683
RsaNI GTAC 3 cut(s) 531, 574, 682
RseI CAYNNNNRTG 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 5 cut(s) 80, 153, 312, 513, 859
SatI GCNGC 3 cut(s) 279, 494, 519
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 1 cut(s) 568
Sfr274I CTCGAG 2 cut(s) 273, 476
SlaI CTCGAG 2 cut(s) 273, 476
SmiMI CAYNNNNRTG 1 cut(s) 58
SmlI CTYRAG 4 cut(s) 273, 311, 476, 548
SmoI CTYRAG 4 cut(s) 273, 311, 476, 548
SphI GCATGC 1 cut(s) 506
Sse9I AATT 1 cut(s) 71
SsiI CCGC 2 cut(s) 493, 815
SspI AATATT 1 cut(s) 151
SspMI CTAG 2 cut(s) 195, 380
StyI CCWWGG 2 cut(s) 97, 534
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 3 cut(s) 274, 325, 477
TasI AATT 1 cut(s) 71
TatI WGTACW 2 cut(s) 573, 681
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 1 cut(s) 711
Tru1I TTAA 5 cut(s) 80, 153, 312, 513, 859
Tru9I TTAA 5 cut(s) 80, 153, 312, 513, 859
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 278, 518
TspDTI ATGAA 6 cut(s) 84, 305, 329, 426, 660, 719
TspRI CASTG 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 311
VspI ATTAAT 1 cut(s) 153
XceI RCATGY 3 cut(s) 265, 506, 748
XhoI CTCGAG 2 cut(s) 273, 476
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 2 cut(s) 390, 710
XspI CTAG 2 cut(s) 195, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.