Rh3CG108700

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017685
Physical Location & Seq
Reverse (-)
8561707 .. 8563675
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG108700.1

Sequence Viewer

Length: 597 bp
ATGGCTTCGTTGTCCAAGGATGATGAAGACCTATTTTCCTTCGCAAGCCAATTGTCTCCACTTGATTTGAGTGGAAGTGAGTATGTTCCATCGGGGTGGCAAGATGAATTGCTTTTAACAGATGATACTTTCCTTGGAGATGGATTTGGTGTTGGGATTGATGGAGAAGAGGGTATGTCCAACAATCTTAATACCACTTCTTGCAACACTGAAGATAGAAGTGGTATTGCTAGTTCTTCTTCAAAACCATCAAAAGCCAAAATGTTGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTCGAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGGCATTCATCGTTGGCCTTGCCGAAAGTTGAACAGCGTAAAGAACCTAGAAGAAAGCATTCAGGAGTTTGGGAAGAATGAAGAAGAGCTGGAGTTTTTGGAGAAAGAGAGGAAAATGATTGAGCAAGTTCCCGATTTGCAACTCGAGGAAAAGACGAAGCGGCTCAGGCATGCTTATTTTAAGGCCAAAAGTTGTGGAAATTATTCTACGCACCGACGGTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

5.18

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 89 - 136 7.7e-21 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 529
AcuI CTGAAG 2 cut(s) 231, 339
AfaI GTAC 1 cut(s) 590
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 2 cut(s) 243, 400
AluBI AGCT 2 cut(s) 317, 457
AluI AGCT 2 cut(s) 317, 457
Alw26I GTCTC 2 cut(s) 60, 337
Ama87I CYCGRG 2 cut(s) 309, 512
AoxI GGCC 2 cut(s) 383, 552
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 2 cut(s) 426, 571
AvaI CYCGRG 2 cut(s) 309, 512
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 326
BccI CCATC 4 cut(s) 97, 134, 155, 256
BcoDI GTCTC 2 cut(s) 60, 337
BfaI CTAG 2 cut(s) 231, 416
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 2 cut(s) 315, 530
BlsI GCNGC 2 cut(s) 316, 531
BmeT110I CYCGRG 2 cut(s) 309, 512
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 15, 133
BseDI CCNNGG 2 cut(s) 15, 133
BseGI GGATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 2 cut(s) 385, 554
BsiHKCI CYCGRG 2 cut(s) 309, 512
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 60, 337
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 2 cut(s) 372, 426
BsnI GGCC 2 cut(s) 385, 554
BsoBI CYCGRG 2 cut(s) 309, 512
BspACI CCGC 1 cut(s) 529
BspANI GGCC 2 cut(s) 385, 554
BspCNI CTCAG 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 15, 133
BssT1I CCWWGG 2 cut(s) 15, 133
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 2 cut(s) 162, 447
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 46, 540
BstDEI CTNAG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 60, 337
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNSI RCATGY 2 cut(s) 301, 542
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 385, 554
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 46, 540
Csp6I GTAC 1 cut(s) 589
CspCI CAANNNNNGTGG 4 cut(s) 48, 83, 544, 579
CviAII CATG 2 cut(s) 298, 539
CviJI RGCY 8 cut(s) 5, 48, 257, 317, 385, 457, 532, 554
CviKI_1 RGCY 8 cut(s) 5, 48, 257, 317, 385, 457, 532, 554
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 162, 447
EarI CTCTTC 2 cut(s) 162, 447
Eco130I CCWWGG 2 cut(s) 15, 133
Eco57I CTGAAG 2 cut(s) 231, 339
Eco88I CYCGRG 2 cut(s) 309, 512
EcoT14I CCWWGG 2 cut(s) 15, 133
ErhI CCWWGG 2 cut(s) 15, 133
FaeI CATG 2 cut(s) 301, 542
FaiI YATR 5 cut(s) 84, 176, 281, 299, 540
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 297, 538
Fnu4HI GCNGC 2 cut(s) 315, 530
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 315, 530
FspBI CTAG 2 cut(s) 231, 416
GluI GCNGC 2 cut(s) 315, 530
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 2 cut(s) 385, 554
Hin1II CATG 2 cut(s) 301, 542
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 362, 431, 500
Hpy99I CGWCG 1 cut(s) 588
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4V TGCA 2 cut(s) 204, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 1 cut(s) 533
Hsp92II CATG 2 cut(s) 301, 542
LguI GCTCTTC 1 cut(s) 447
LpnPI CCDG 3 cut(s) 416, 443, 520
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 2 cut(s) 231, 416
MaeIII GTNAC 1 cut(s) 337
MfeI CAATTG 1 cut(s) 50
MluCI AATT 3 cut(s) 50, 107, 568
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 3 cut(s) 163, 471, 508
MroXI GAANNNNTTC 2 cut(s) 426, 571
MseI TTAA 4 cut(s) 116, 189, 348, 549
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 347
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 2 cut(s) 372, 426
MwoI GCNNNNNNNGC 1 cut(s) 535
NlaIII CATG 2 cut(s) 301, 542
NspI RCATGY 2 cut(s) 301, 542
PaeI GCATGC 1 cut(s) 542
PaeR7I CTCGAG 2 cut(s) 309, 512
PciSI GCTCTTC 1 cut(s) 447
PctI GAATGC 2 cut(s) 372, 426
PdmI GAANNNNTTC 2 cut(s) 426, 571
PkrI GCNGC 2 cut(s) 316, 531
PspXI VCTCGAGB 2 cut(s) 309, 512
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 4 cut(s) 116, 189, 348, 549
SatI GCNGC 2 cut(s) 315, 530
SetI ASST 5 cut(s) 33, 319, 359, 417, 459
Sfr274I CTCGAG 2 cut(s) 309, 512
SlaI CTCGAG 2 cut(s) 309, 512
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 3 cut(s) 309, 347, 512
SmoI CTYRAG 3 cut(s) 309, 347, 512
SphI GCATGC 1 cut(s) 542
Sse9I AATT 3 cut(s) 50, 107, 568
SsiI CCGC 1 cut(s) 529
SspMI CTAG 2 cut(s) 231, 416
StyI CCWWGG 2 cut(s) 15, 133
TaaI ACNGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 310, 361, 513
TasI AATT 3 cut(s) 50, 107, 568
TauI GCSGC 1 cut(s) 532
Tru1I TTAA 4 cut(s) 116, 189, 348, 549
Tru9I TTAA 4 cut(s) 116, 189, 348, 549
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 39, 120, 341, 365, 462
TspRI CASTG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 347
XceI RCATGY 2 cut(s) 301, 542
XhoI CTCGAG 2 cut(s) 309, 512
XmnI GAANNNNTTC 2 cut(s) 426, 571
XspI CTAG 2 cut(s) 231, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.