Rroxscaffold_6G00419250

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017685
Physical Location & Seq
Forward (+)
40760234 .. 40762438
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419250.1

Sequence Viewer

Length: 591 bp
ATGGCTTCGTTGTCCAAGGATGATGAAGACCTATTTTCCTTCGCAAGCCAATTATCTCCACTTGATTTGAGTGGAAGTGAGTATGTTCCATCGGGGTGGCAAGATGAATTGCTTTTAACAGATGATACTTTCCTTGGAGATGGATTTGGTGTTGGGATTGATGGAGAAGAGGGTATGTCCAACAATATTAATACCACTTCTTGCAATACTGAAGATAGAAGTGGTATTGCAAGTTCTTTTTCAAAGCCATCAAAAGCCAAAATGTTGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTAGAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGAAATTCATCGTTGGCCTTGCCGAAAGTTGAACAGCGTAAAGAACCTAGAAGAAAGCATTCAGGAGTTTGGGAAGAATGAAGAAGAGCTGGAGTTTTTGGAGAAAGAGAGGAAAATGATTGAGCAAGTTCCTGATTTGCAACTCGAGGAAAAGACAAAGAGGCTTAGGCATGCTTATTTTAAGGCCAAAAGTTGCTCGAGATCAAATACAGCGTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

196

Amino Acids

22.2

Weight (kDa)

4.87

Isoelectric Point (pI)

68.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 89 - 136 3.5e-20 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 2 cut(s) 231, 339
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 2 cut(s) 243, 400
AluBI AGCT 2 cut(s) 317, 457
AluI AGCT 2 cut(s) 317, 457
Alw26I GTCTC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 2 cut(s) 512, 565
AoxI GGCC 2 cut(s) 383, 552
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 372
ArsI GACNNNNNNTTYG 1 cut(s) 566
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 426
AvaI CYCGRG 2 cut(s) 512, 565
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 326
BccI CCATC 4 cut(s) 97, 134, 155, 256
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 2 cut(s) 309, 416
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmeT110I CYCGRG 2 cut(s) 512, 565
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 15, 133
BseDI CCNNGG 2 cut(s) 15, 133
BseGI GGATG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 2 cut(s) 385, 554
BsiHKCI CYCGRG 2 cut(s) 512, 565
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 2 cut(s) 385, 554
BsoBI CYCGRG 2 cut(s) 512, 565
Bsp143I GATC 1 cut(s) 569
BspANI GGCC 2 cut(s) 385, 554
BspQI GCTCTTC 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 15, 133
BssMI GATC 1 cut(s) 569
BssT1I CCWWGG 2 cut(s) 15, 133
Bst6I CTCTTC 2 cut(s) 162, 447
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 46, 540
BstDEI CTNAG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 1 cut(s) 572
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 569
BstNSI RCATGY 2 cut(s) 301, 542
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 385, 554
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 46, 540
CaiI CAGNNNCTG 1 cut(s) 584
CseI GACGC 1 cut(s) 570
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 298, 539
CviJI RGCY 9 cut(s) 5, 48, 247, 257, 317, 385, 457, 532, 554
CviKI_1 RGCY 9 cut(s) 5, 48, 247, 257, 317, 385, 457, 532, 554
DdeI CTNAG 1 cut(s) 533
DpnI GATC 1 cut(s) 571
DpnII GATC 1 cut(s) 569
Eam1104I CTCTTC 2 cut(s) 162, 447
EarI CTCTTC 2 cut(s) 162, 447
Eco130I CCWWGG 2 cut(s) 15, 133
Eco57I CTGAAG 2 cut(s) 231, 339
Eco88I CYCGRG 2 cut(s) 512, 565
EcoT14I CCWWGG 2 cut(s) 15, 133
ErhI CCWWGG 2 cut(s) 15, 133
FaeI CATG 2 cut(s) 301, 542
FaiI YATR 5 cut(s) 84, 176, 281, 299, 540
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 297, 538
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 309, 416
GluI GCNGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 2 cut(s) 385, 554
HgaI GACGC 1 cut(s) 570
Hin1II CATG 2 cut(s) 301, 542
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 4 cut(s) 362, 431, 500, 567
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 204, 230, 508
HpyF3I CTNAG 1 cut(s) 533
Hsp92II CATG 2 cut(s) 301, 542
Kzo9I GATC 1 cut(s) 569
LguI GCTCTTC 1 cut(s) 447
LpnPI CCDG 3 cut(s) 416, 443, 513
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 2 cut(s) 309, 416
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 571
MboI GATC 1 cut(s) 569
MboII GAAGA 8 cut(s) 38, 179, 224, 332, 431, 454, 461, 464
MluCI AATT 3 cut(s) 50, 107, 372
MmeI TCCRAC 2 cut(s) 204, 348
MnlI CCTC 4 cut(s) 163, 471, 508, 522
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 4 cut(s) 116, 189, 348, 549
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 426
NdeII GATC 1 cut(s) 569
NlaIII CATG 2 cut(s) 301, 542
NspI RCATGY 2 cut(s) 301, 542
PaeI GCATGC 1 cut(s) 542
PaeR7I CTCGAG 2 cut(s) 512, 565
PciSI GCTCTTC 1 cut(s) 447
PctI GAATGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 426
PkrI GCNGC 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 189
PspXI VCTCGAGB 1 cut(s) 512
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
PstNI CAGNNNCTG 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 4 cut(s) 116, 189, 348, 549
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 569
SetI ASST 5 cut(s) 33, 319, 359, 417, 459
Sfr274I CTCGAG 2 cut(s) 512, 565
SlaI CTCGAG 2 cut(s) 512, 565
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 3 cut(s) 347, 512, 565
SmoI CTYRAG 3 cut(s) 347, 512, 565
SphI GCATGC 1 cut(s) 542
Sse9I AATT 3 cut(s) 50, 107, 372
SspI AATATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 309, 416
StyI CCWWGG 2 cut(s) 15, 133
TaqI TCGA 3 cut(s) 361, 513, 566
TasI AATT 3 cut(s) 50, 107, 372
Tru1I TTAA 4 cut(s) 116, 189, 348, 549
Tru9I TTAA 4 cut(s) 116, 189, 348, 549
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 39, 120, 341, 365, 462
Vha464I CTTAAG 1 cut(s) 347
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 372
XceI RCATGY 2 cut(s) 301, 542
XhoI CTCGAG 2 cut(s) 512, 565
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 2 cut(s) 309, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.